Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0011203

Physical Location & Seq

Genomic Coordinates Forward (+)

13178488 .. 13179527

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G013330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGATCTCAAATTTGTGAGCAATATAGTCAACAATTTGGCCCCCCTAAATACAATACAATGGGATCAAAAATTGAAGGGATCCAATGGTTGCCAAAATGCACATAAAAAGCCACAACATTCCTCAAAACTTTCCCCAAGCTACTCTATAAACACACGATCCCATATGATGGAACTAGACACCACCACCACAACCATCATGGGCTCTCTGGCCACGCTCTCACCTCCCCAACTCTCCGATCTCACTCACACCCTCCTCTCCCTCTCCCACCACCACCGCCGCCGCATCTCCTCCCTCCTCTCCTCTCCCATCCTCTTTGCCCTCACCATCCGCCGCCTCAACTCCCTCTCCCTCCACCACAAGACCCTCCTCATCGCCCGCCACGTCATCTCCTCCCTCCACCACCTCGCCCTCCACTTCCAGCCGGCCGCCAAAGCCCCACCTCCACCCGTCAAGCTGAGAGACCTCGACGCTGTCCTCCTCCTCCTCTTGCTCTGCGAGGCCCACCAGCACGACCCTGACGCCCTCCAAGCCCCCACCGCGAAATGGCGGGAATTACTCGGCAAGTTCTACTGTGACACCATGTTAACGGTTTCCGGCATCGGGGCCCAAAACGCGTCGGTTTTGGTTTCGTACGTTGAAATGCTGACGAGGTGTTTGAGGTTCGTTAGTGCGATGGAGAGTTGTAGTTTTGGCGGGAAGGCTGGAAGGGAAGTGCCGGCGGCGAAATCGGTGGTGGTGGCGCTGCCGTCGGTAGAGGTGAGAAGTGGTGGCGGCGGGCCCAAGGAGTGCGTGATATGTAAGGAGGAGATGGCGGAGAACAGAGATGTGTGCGAGATGCCGTGCCGGCATTTGTTTCATTGGGTGTGTATTTTGCGGTGGCTGAGCAAGAGGAACACGTGTCCCTGCTGCCGCTTTGCGCTTCCGACGGATGATGTGTACGGTGAGATCCAGCGGCTGTGGAACGTTTTGGATAATGTGGCTTCGGAGAAGGGTTTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009501 GO:0009536 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

334

Amino Acids

37.04

Weight (kDa)

8.96

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	263 - 305	9.5e-13	Ring finger domain
zf-rbx1	PF12678	263 - 305	5.3e-07	RING-H2 zinc finger domain
zf-RING_11	PF17123	263 - 291	1.6e-06	RING-like zinc finger
zf-C3HC4_2	PF13923	263 - 304	9.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02750
fragaria_vesca	FvH4_6g14890
malus_domestica	MD04G1110800.v1.1 MD12G1130000.v1.1 MD15G1018600.v1.1
pyrus_communis	pycom04g10430 pycom12g12610
rosa_chinensis	RchiOBHm_Chr3g0468101
rosa_laevigata	RLG00000024449
rosa_multiflora	Rmu_co8333667.1_g000001 Rmu_sc0003659.1_g000014 Rmu_sc0012651.1_g000009 Rmu_sc0039822.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413050
rosa_rugosa	Rorug03G0092700
rosa_samantha	Rh3AG141100 Rh3BG162600 Rh3CG162400 Rh3DG163100
rosa_wichuraiana	Rw3G013330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	169
AccII	CGCG	2 cut(s)	542, 617
AclI	AACGTT	1 cut(s)	966
AclWI	GGATC	6 cut(s)	12, 72, 75, 88, 153, 943
AcoI	YGGCCR	2 cut(s)	210, 426
AcsI	RAATTY	1 cut(s)	11
AcvI	CACGTG	1 cut(s)	900
AcyI	GRCGYC	1 cut(s)	522
AfaI	GTAC	2 cut(s)	635, 941
AfiI	CCNNNNNNNGG	3 cut(s)	169, 546, 603
AflIII	ACRYGT	3 cut(s)	615, 897, 899
AgsI	TTSAA	2 cut(s)	76, 641
AjiI	CACGTC	1 cut(s)	385
AluBI	AGCT	2 cut(s)	141, 457
AluI	AGCT	2 cut(s)	141, 457
Alw26I	GTCTC	1 cut(s)	456
AlwI	GGATC	6 cut(s)	12, 72, 75, 88, 153, 943
AlwNI	CAGNNNCTG	1 cut(s)	958
AoxI	GGCC	6 cut(s)	39, 210, 426, 501, 606, 779
ApaI	GGGCCC	2 cut(s)	610, 783
ApeKI	GCWGC	2 cut(s)	745, 909
ApoI	RAATTY	1 cut(s)	11
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
AspLEI	GCGC	2 cut(s)	745, 922
AspS9I	GGNCC	6 cut(s)	40, 502, 606, 607, 779, 780
AsuHPI	GGTGA	4 cut(s)	213, 316, 772, 956
BaeGI	GKGCMC	2 cut(s)	610, 783
BalI	TGGCCA	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	80
BanII	GRGCYC	3 cut(s)	206, 610, 783
BbrPI	CACGTG	1 cut(s)	900
BbvI	GCAGC	2 cut(s)	732, 896
BccI	CCATC	6 cut(s)	163, 203, 317, 335, 670, 805
BceAI	ACGGC	2 cut(s)	733, 826
BcoDI	GTCTC	1 cut(s)	456
BfaI	CTAG	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	746
BglI	GCCNNNNNGGC	1 cut(s)	847
BlpI	GCTNAGC	1 cut(s)	884
BmgBI	CACGTC	1 cut(s)	385
BmgT120I	GGNCC	6 cut(s)	40, 502, 606, 607, 779, 780
BmiI	GGNNCC	5 cut(s)	42, 82, 607, 608, 781
BmsI	GCATC	3 cut(s)	294, 609, 828
Bpu1102I	GCTNAGC	1 cut(s)	884
BsaAI	YACGTR	1 cut(s)	900
BsaHI	GRCGYC	1 cut(s)	522
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	783
BsaXI	ACNNNNNCTCC	4 cut(s)	332, 362, 374, 404
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 546, 603
Bse118I	RCCGGY	3 cut(s)	424, 718, 846
BseDI	CCNNGG	1 cut(s)	783
BseGI	GGATG	3 cut(s)	309, 327, 937
BseLI	CCNNNNNNNGG	3 cut(s)	169, 546, 603
BseMII	CTCAG	2 cut(s)	449, 875
BseSI	GKGCMC	2 cut(s)	610, 783
BseX3I	CGGCCG	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	732, 896
Bsh1236I	CGCG	2 cut(s)	542, 617
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	6 cut(s)	41, 212, 428, 503, 608, 781
BsiEI	CGRYCG	1 cut(s)	429
BsiSI	CCGG	4 cut(s)	425, 597, 719, 847
BsiWI	CGTACG	1 cut(s)	633
BslFI	GGGAC	1 cut(s)	888
BslI	CCNNNNNNNGG	3 cut(s)	169, 546, 603
BsmAI	GTCTC	1 cut(s)	456
BsmFI	GGGAC	1 cut(s)	888
BsnI	GGCC	6 cut(s)	41, 212, 428, 503, 608, 781
Bso31I	GGTCTC	1 cut(s)	456
Bsp120I	GGGCCC	2 cut(s)	606, 779
Bsp1286I	GDGCHC	3 cut(s)	206, 610, 783
Bsp143I	GATC	6 cut(s)	4, 64, 80, 158, 238, 948
Bsp1720I	GCTNAGC	1 cut(s)	884
BspANI	GGCC	6 cut(s)	41, 212, 428, 503, 608, 781
BspCNI	CTCAG	2 cut(s)	450, 876
BspFNI	CGCG	2 cut(s)	542, 617
BspLI	GGNNCC	5 cut(s)	42, 82, 607, 608, 781
BspPI	GGATC	6 cut(s)	12, 72, 75, 88, 153, 943
BspTNI	GGTCTC	1 cut(s)	456
BsrFI	RCCGGY	3 cut(s)	424, 718, 846
BssAI	RCCGGY	3 cut(s)	424, 718, 846
BssECI	CCNNGG	1 cut(s)	783
BssMI	GATC	6 cut(s)	4, 64, 80, 158, 238, 948
BssNI	GRCGYC	1 cut(s)	522
BssT1I	CCWWGG	1 cut(s)	783
Bst4CI	ACNGT	3 cut(s)	575, 592, 944
BstACI	GRCGYC	1 cut(s)	522
BstBAI	YACGTR	1 cut(s)	900
BstC8I	GCNNGC	5 cut(s)	379, 426, 720, 779, 848
BstDEI	CTNAG	2 cut(s)	458, 884
BstF5I	GGATG	3 cut(s)	309, 327, 937
BstFNI	CGCG	2 cut(s)	542, 617
BstH2I	RGCGCY	1 cut(s)	746
BstHHI	GCGC	2 cut(s)	745, 922
BstKTI	GATC	6 cut(s)	7, 67, 83, 161, 241, 951
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	6 cut(s)	4, 64, 80, 158, 238, 948
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	5 cut(s)	434, 530, 539, 614, 847
BstSLI	GKGCMC	2 cut(s)	610, 783
BstUI	CGCG	2 cut(s)	542, 617
BstV1I	GCAGC	2 cut(s)	732, 896
BstX2I	RGATCY	3 cut(s)	4, 80, 948
BstYI	RGATCY	3 cut(s)	4, 80, 948
BstZI	CGGCCG	1 cut(s)	426
BsuRI	GGCC	6 cut(s)	41, 212, 428, 503, 608, 781
BtgZI	GCGATG	2 cut(s)	358, 689
BtrI	CACGTC	1 cut(s)	385
BtsCI	GGATG	3 cut(s)	309, 327, 937
Cac8I	GCNNGC	5 cut(s)	379, 426, 720, 779, 848
CaiI	CAGNNNCTG	1 cut(s)	958
CfoI	GCGC	2 cut(s)	745, 922
Cfr10I	RCCGGY	3 cut(s)	424, 718, 846
Cfr13I	GGNCC	6 cut(s)	40, 502, 606, 607, 779, 780
CseI	GACGC	3 cut(s)	479, 530, 606
Csp6I	GTAC	2 cut(s)	634, 940
CviAII	CATG	2 cut(s)	199, 583
CviQI	GTAC	2 cut(s)	634, 940
DdeI	CTNAG	2 cut(s)	458, 884
DpnI	GATC	6 cut(s)	6, 66, 82, 160, 240, 950
DpnII	GATC	6 cut(s)	4, 64, 80, 158, 238, 948
EaeI	YGGCCR	2 cut(s)	210, 426
EagI	CGGCCG	1 cut(s)	426
EciI	GGCGGA	2 cut(s)	320, 830
EclXI	CGGCCG	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	783
Eco24I	GRGCYC	3 cut(s)	206, 610, 783
Eco31I	GGTCTC	1 cut(s)	456
Eco52I	CGGCCG	1 cut(s)	426
Eco72I	CACGTG	1 cut(s)	900
EcoO109I	RGGNCCY	1 cut(s)	606
EcoT14I	CCWWGG	1 cut(s)	783
EcoT38I	GRGCYC	3 cut(s)	206, 610, 783
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	2 cut(s)	202, 586
FaiI	YATR	8 cut(s)	26, 105, 149, 165, 167, 200, 584, 799
FaqI	GGGAC	1 cut(s)	888
FatI	CATG	2 cut(s)	198, 582
FauI	CCCGC	4 cut(s)	386, 543, 689, 770
FauNDI	CATATG	1 cut(s)	165
FokI	GGATG	3 cut(s)	296, 314, 944
FriOI	GRGCYC	3 cut(s)	206, 610, 783
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	2 cut(s)	744, 921
HaeII	RGCGCY	1 cut(s)	746
HaeIII	GGCC	6 cut(s)	41, 212, 428, 503, 608, 781
HapII	CCGG	4 cut(s)	425, 597, 719, 847
HgaI	GACGC	3 cut(s)	479, 530, 606
HhaI	GCGC	2 cut(s)	745, 922
Hin1I	GRCGYC	1 cut(s)	522
Hin1II	CATG	2 cut(s)	202, 586
Hin6I	GCGC	2 cut(s)	743, 920
HinP1I	GCGC	2 cut(s)	743, 920
HincII	GTYRAC	2 cut(s)	31, 588
HindII	GTYRAC	2 cut(s)	31, 588
HpaI	GTTAAC	1 cut(s)	588
HpaII	CCGG	4 cut(s)	425, 597, 719, 847
HphI	GGTGA	4 cut(s)	213, 316, 772, 956
Hpy166II	GTNNAC	3 cut(s)	31, 588, 940
Hpy188I	TCNGA	3 cut(s)	238, 927, 988
Hpy8I	GTNNAC	3 cut(s)	31, 588, 940
Hpy99I	CGWCG	4 cut(s)	473, 622, 754, 931
HpyAV	CCTTC	4 cut(s)	70, 694, 702, 985
HpyCH4III	ACNGT	3 cut(s)	575, 592, 944
HpyCH4IV	ACGT	4 cut(s)	384, 636, 899, 966
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	5 cut(s)	434, 530, 539, 614, 847
HpyF3I	CTNAG	2 cut(s)	458, 884
HpySE526I	ACGT	4 cut(s)	384, 636, 899, 966
Hsp92I	GRCGYC	1 cut(s)	522
Hsp92II	CATG	2 cut(s)	202, 586
HspAI	GCGC	2 cut(s)	743, 920
KroI	GCCGGC	3 cut(s)	424, 718, 846
KroNI	GCCGGC	3 cut(s)	426, 720, 848
KspAI	GTTAAC	1 cut(s)	588
Kzo9I	GATC	6 cut(s)	4, 64, 80, 158, 238, 948
Lsp1109I	GCAGC	2 cut(s)	732, 896
LweI	GCATC	3 cut(s)	294, 609, 828
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	4 cut(s)	384, 636, 899, 966
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	6 cut(s)	6, 66, 82, 160, 240, 950
MboI	GATC	6 cut(s)	4, 64, 80, 158, 238, 948
MflI	RGATCY	3 cut(s)	4, 80, 948
MhlI	GDGCHC	3 cut(s)	206, 610, 783
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	4 cut(s)	11, 34, 71, 554
MluI	ACGCGT	1 cut(s)	615
MluNI	TGGCCA	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	950
Mox20I	TGGCCA	1 cut(s)	212
MroNI	GCCGGC	3 cut(s)	424, 718, 846
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	2 cut(s)	587, 1003
Msp20I	TGGCCA	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	955
MspI	CCGG	4 cut(s)	425, 597, 719, 847
MvnI	CGCG	2 cut(s)	542, 617
MwoI	GCNNNNNNNGC	5 cut(s)	434, 530, 539, 614, 847
NaeI	GCCGGC	3 cut(s)	426, 720, 848
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	6 cut(s)	4, 64, 80, 158, 238, 948
NgoMIV	GCCGGC	3 cut(s)	424, 718, 846
NlaIII	CATG	2 cut(s)	202, 586
NlaIV	GGNNCC	5 cut(s)	42, 82, 607, 608, 781
NmeAIII	GCCGAG	1 cut(s)	540
NmuCI	GTSAC	1 cut(s)	575
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PdiI	GCCGGC	3 cut(s)	426, 720, 848
Pfl23II	CGTACG	1 cut(s)	633
PflFI	GACNNNGTC	1 cut(s)	473
PflMI	CCANNNNNTGG	1 cut(s)	169
PmaCI	CACGTG	1 cut(s)	900
PmlI	CACGTG	1 cut(s)	900
Ppu21I	YACGTR	1 cut(s)	900
Psp1406I	AACGTT	1 cut(s)	966
PspCI	CACGTG	1 cut(s)	900
PspLI	CGTACG	1 cut(s)	633
PspN4I	GGNNCC	5 cut(s)	42, 82, 607, 608, 781
PspOMI	GGGCCC	2 cut(s)	606, 779
PspPI	GGNCC	6 cut(s)	40, 502, 606, 607, 779, 780
PstNI	CAGNNNCTG	1 cut(s)	958
PsuI	RGATCY	3 cut(s)	4, 80, 948
PsyI	GACNNNGTC	1 cut(s)	473
RsaI	GTAC	2 cut(s)	635, 941
RsaNI	GTAC	2 cut(s)	634, 940
SaqAI	TTAA	2 cut(s)	587, 1003
Sau3AI	GATC	6 cut(s)	4, 64, 80, 158, 238, 948
Sau96I	GGNCC	6 cut(s)	40, 502, 606, 607, 779, 780
SduI	GDGCHC	3 cut(s)	206, 610, 783
SfaNI	GCATC	3 cut(s)	294, 609, 828
Sse9I	AATT	4 cut(s)	11, 34, 71, 554
SspMI	CTAG	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	3 cut(s)	575, 592, 944
TaiI	ACGT	4 cut(s)	387, 639, 902, 969
TaqI	TCGA	1 cut(s)	468
TasI	AATT	4 cut(s)	11, 34, 71, 554
TauI	GCSGC	8 cut(s)	282, 285, 336, 431, 725, 777, 915, 958
Tru1I	TTAA	2 cut(s)	587, 1003
Tru9I	TTAA	2 cut(s)	587, 1003
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	2 cut(s)	745, 909
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	1 cut(s)	848
TspGWI	ACGGA	1 cut(s)	944
Tth111I	GACNNNGTC	1 cut(s)	473
Van91I	CCANNNNNTGG	1 cut(s)	169
XapI	RAATTY	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.