Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011203

Physical Location & Seq

Genomic Coordinates Forward (+)

7226346 .. 7227349

Gene Structure 1004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0092700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAGCAAAGGAGCCAAGAGAAAGGCTCGGCCGGCGGCGACGGAGGAGGCCAAAGCCGCCGCCACATGCACCAAGCGCGTCAAAGCCTCTCAGCAGCATCCGGAGGCGGAGCCTCAGTACTTGGAGGAGAAGCGCAACCTTCAAGACCTTTGGAAGGCAGCATTCCCGGTCGGGACCGAGTGGGATCAGTTGGACTCGGTCTACAAATACAACTGGGATTTCTCGAATCTCGAGAAGGAATTTGAAGAAGGGGGAAAGTTGTACGGGATTGGGACAGCCAACAAAGTCTACATCCTCGCCGCTACGGAGACTTCGTCGTCGCCGTCGCTGGCGGCTGTCGTGGCGCCTAGGCCACCGTCAATGGAGATTGGGATAAGAGAAGGCTGGAACTCCGAAAGAGCGGCCAAGTCTGGTTCGAACTTGCCTCAGATTTTCGTGCTGGGATGTACTCAGAGGAAGGCGAGCTTGAAGCAGATGAAGGAGGACCGTTGGATGAAGTTCCAGTACTGCGTGCCGTATTTGTGTAATCCGAAGAACGAAGAGGAGAAAGAGCGGTGTAGTGTGGTGGATATCCTCTTCCCACAGGAGCCGCAAGCACCACTGTTTGTACAATTCGATTGGGACATGGATGAAGTTGAGGACTTCACTGATGAACTTATAGACGCTGAGGAGTTGAGCGTGGATAAGAAGGAGGCATTCATGGAGTTTTTGAAGGAGGAAGTAAAGAACGCTAAGAAGAAGAAGAGGGAAGCGAGGAAGAAGAGAATGGAGGACCCAAAGTATCAGGAAGCTAAAACCTATTATGAGAATATAAGGCTTTATAAGATCTACCCAGTACAAACACCAAACACTCCTTTGATAGAGAAGAAGGCTCGTCGCATCAACTTCTACTACGGAACGTACTGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009501 GO:0009536 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

303

Amino Acids

35.2

Weight (kDa)

8.03

Isoelectric Point (pI)

57.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02750
fragaria_vesca	FvH4_6g14890
malus_domestica	MD04G1110800.v1.1 MD12G1130000.v1.1 MD15G1018600.v1.1
pyrus_communis	pycom04g10430 pycom12g12610
rosa_chinensis	RchiOBHm_Chr3g0468101
rosa_laevigata	RLG00000024449
rosa_multiflora	Rmu_co8333667.1_g000001 Rmu_sc0003659.1_g000014 Rmu_sc0012651.1_g000009 Rmu_sc0039822.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413050
rosa_rugosa	Rorug03G0092700
rosa_samantha	Rh3AG141100 Rh3BG162600 Rh3CG162400 Rh3DG163100
rosa_wichuraiana	Rw3G013330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	822
AasI	GACNNNNNNGTC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	343
AccBSI	CCGCTC	2 cut(s)	401, 553
AccI	GTMKAC	2 cut(s)	201, 288
AccII	CGCG	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	9 cut(s)	35, 57, 60, 107, 300, 332, 401, 553, 590
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	2 cut(s)	29, 402
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	7 cut(s)	119, 263, 448, 506, 609, 837, 902
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	4 cut(s)	143, 245, 469, 712
AluBI	AGCT	2 cut(s)	465, 791
AluI	AGCT	2 cut(s)	465, 791
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	192
Ama87I	CYCGRG	1 cut(s)	230
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	4 cut(s)	29, 48, 350, 402
ApeKI	GCWGC	2 cut(s)	94, 158
ApoI	RAATTY	1 cut(s)	239
AspA2I	CCTAGG	1 cut(s)	347
AspLEI	GCGC	3 cut(s)	78, 135, 346
AspS9I	GGNCC	3 cut(s)	174, 484, 772
AsuC2I	CCSGG	1 cut(s)	167
AsuII	TTCGAA	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	3 cut(s)	174, 484, 772
AvrII	CCTAGG	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	343
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
BbvCI	CCTCAGC	1 cut(s)	666
BbvI	GCAGC	2 cut(s)	106, 170
BceAI	ACGGC	2 cut(s)	307, 499
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	347
BglII	AGATCT	1 cut(s)	825
BisI	GCNGC	9 cut(s)	36, 57, 60, 95, 159, 300, 333, 402, 590
BlnI	CCTAGG	1 cut(s)	347
BlsI	GCNGC	9 cut(s)	37, 58, 61, 96, 160, 301, 334, 403, 591
BmcAI	AGTACT	2 cut(s)	119, 506
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	3 cut(s)	174, 484, 772
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	3 cut(s)	174, 484, 772
BmiI	GGNNCC	6 cut(s)	13, 111, 175, 345, 588, 774
BmrFI	CCNGG	1 cut(s)	167
BmrI	ACTGGG	2 cut(s)	223, 827
BmsI	GCATC	2 cut(s)	106, 888
BmuI	ACTGGG	2 cut(s)	223, 827
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
Bpu10I	CCTNAGC	1 cut(s)	666
Bpu14I	TTCGAA	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	3 cut(s)	218, 502, 833
BseAI	TCCGGA	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	5 cut(s)	97, 291, 449, 498, 634
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	5 cut(s)	104, 128, 440, 464, 657
BseNI	ACTGG	3 cut(s)	218, 502, 833
BseRI	GAGGAG	4 cut(s)	59, 140, 557, 683
BseX3I	CGGCCG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	106, 170
BseYI	CCCAGC	1 cut(s)	439
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	2 cut(s)	32, 171
BshFI	GGCC	4 cut(s)	31, 50, 352, 404
BshNI	GGYRCC	1 cut(s)	343
BsiEI	CGRYCG	2 cut(s)	32, 171
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	32, 101, 167
BslFI	GGGAC	3 cut(s)	187, 286, 635
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	3 cut(s)	187, 286, 635
BsmI	GAATGC	2 cut(s)	161, 695
BsnI	GGCC	4 cut(s)	31, 50, 352, 404
BsoBI	CYCGRG	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	416
Bsp13I	TCCGGA	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	607
Bsp143I	GATC	2 cut(s)	184, 825
BspACI	CCGC	9 cut(s)	35, 57, 60, 107, 300, 332, 401, 553, 590
BspANI	GGCC	4 cut(s)	31, 50, 352, 404
BspCNI	CTCAG	5 cut(s)	103, 127, 439, 463, 658
BspEI	TCCGGA	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	6 cut(s)	13, 111, 175, 345, 588, 774
BspPI	GGATC	1 cut(s)	192
BspT104I	TTCGAA	1 cut(s)	416
BspT107I	GGYRCC	1 cut(s)	343
BsrBI	CCGCTC	2 cut(s)	401, 553
BsrFI	RCCGGY	1 cut(s)	31
BsrGI	TGTACA	1 cut(s)	607
BsrI	ACTGG	3 cut(s)	218, 502, 833
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	2 cut(s)	184, 825
BssNI	GRCGYC	1 cut(s)	344
BssT1I	CCWWGG	1 cut(s)	347
Bst4CI	ACNGT	3 cut(s)	357, 488, 603
Bst6I	CTCTTC	4 cut(s)	534, 581, 737, 755
BstACI	GRCGYC	1 cut(s)	344
BstAUI	TGTACA	1 cut(s)	607
BstBI	TTCGAA	1 cut(s)	416
BstC8I	GCNNGC	5 cut(s)	33, 330, 463, 512, 594
BstDEI	CTNAG	6 cut(s)	90, 114, 426, 450, 666, 732
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	5 cut(s)	97, 291, 449, 498, 634
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	3 cut(s)	78, 135, 346
BstKTI	GATC	2 cut(s)	187, 828
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	2 cut(s)	184, 825
BstMCI	CGRYCG	2 cut(s)	32, 171
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 56, 75, 341
BstNSI	RCATGY	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	106, 170
BstX2I	RGATCY	1 cut(s)	825
BstYI	RGATCY	1 cut(s)	825
BstZI	CGGCCG	1 cut(s)	29
BsuRI	GGCC	4 cut(s)	31, 50, 352, 404
BtsCI	GGATG	5 cut(s)	97, 291, 449, 498, 634
BtsIMutI	CAGTG	2 cut(s)	599, 645
Cac8I	GCNNGC	5 cut(s)	33, 330, 463, 512, 594
CfoI	GCGC	3 cut(s)	78, 135, 346
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	174, 484, 772
CseI	GACGC	2 cut(s)	67, 671
Csp6I	GTAC	7 cut(s)	118, 262, 447, 505, 608, 836, 901
CviAII	CATG	3 cut(s)	66, 625, 700
CviQI	GTAC	7 cut(s)	118, 262, 447, 505, 608, 836, 901
DdeI	CTNAG	6 cut(s)	90, 114, 426, 450, 666, 732
DinI	GGCGCC	1 cut(s)	345
DpnI	GATC	2 cut(s)	186, 827
DpnII	GATC	2 cut(s)	184, 825
DrdI	GACNNNNNNGTC	1 cut(s)	316
DseDI	GACNNNNNNGTC	1 cut(s)	316
EaeI	YGGCCR	2 cut(s)	29, 402
EagI	CGGCCG	1 cut(s)	29
Eam1104I	CTCTTC	4 cut(s)	534, 581, 737, 755
EarI	CTCTTC	4 cut(s)	534, 581, 737, 755
EciI	GGCGGA	1 cut(s)	122
EclXI	CGGCCG	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	347
Eco32I	GATATC	1 cut(s)	571
Eco47I	GGWCC	3 cut(s)	174, 484, 772
Eco52I	CGGCCG	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	772
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	347
EgeI	GGCGCC	1 cut(s)	345
EheI	GGCGCC	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	3 cut(s)	69, 628, 703
FaiI	YATR	7 cut(s)	67, 626, 659, 701, 804, 812, 822
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	3 cut(s)	187, 286, 635
FatI	CATG	3 cut(s)	65, 624, 699
FblI	GTMKAC	2 cut(s)	201, 288
Fnu4HI	GCNGC	9 cut(s)	36, 57, 60, 95, 159, 300, 333, 402, 590
FokI	GGATG	5 cut(s)	84, 278, 456, 505, 641
Fsp4HI	GCNGC	9 cut(s)	36, 57, 60, 95, 159, 300, 333, 402, 590
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	3 cut(s)	77, 134, 345
GluI	GCNGC	9 cut(s)	36, 57, 60, 95, 159, 300, 333, 402, 590
GsaI	CCCAGC	1 cut(s)	443
HaeII	RGCGCY	1 cut(s)	347
HaeIII	GGCC	4 cut(s)	31, 50, 352, 404
HapII	CCGG	3 cut(s)	32, 101, 167
HgaI	GACGC	2 cut(s)	67, 671
HhaI	GCGC	3 cut(s)	78, 135, 346
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	3 cut(s)	69, 628, 703
Hin6I	GCGC	3 cut(s)	76, 133, 344
HinP1I	GCGC	3 cut(s)	76, 133, 344
HinfI	GANTC	2 cut(s)	194, 226
HpaII	CCGG	3 cut(s)	32, 101, 167
Hpy166II	GTNNAC	2 cut(s)	202, 289
Hpy188I	TCNGA	4 cut(s)	394, 429, 453, 531
Hpy188III	TCNNGA	7 cut(s)	101, 143, 172, 223, 230, 232, 785
Hpy8I	GTNNAC	2 cut(s)	202, 289
Hpy99I	CGWCG	5 cut(s)	43, 319, 322, 328, 879
HpyCH4III	ACNGT	3 cut(s)	357, 488, 603
HpyCH4IV	ACGT	1 cut(s)	899
HpyCH4V	TGCA	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 56, 75, 341
HpyF3I	CTNAG	6 cut(s)	90, 114, 426, 450, 666, 732
HpySE526I	ACGT	1 cut(s)	899
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	3 cut(s)	69, 628, 703
HspAI	GCGC	3 cut(s)	76, 133, 344
KasI	GGCGCC	1 cut(s)	343
Kpn2I	TCCGGA	1 cut(s)	100
KroI	GCCGGC	1 cut(s)	31
KroNI	GCCGGC	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	184, 825
LmnI	GCTCC	3 cut(s)	11, 109, 586
Lsp1109I	GCAGC	2 cut(s)	106, 170
LweI	GCATC	2 cut(s)	106, 888
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	899
MalI	GATC	2 cut(s)	186, 827
MbiI	CCGCTC	2 cut(s)	401, 553
MboI	GATC	2 cut(s)	184, 825
MflI	RGATCY	1 cut(s)	825
MluCI	AATT	2 cut(s)	239, 611
Mly113I	GGCGCC	1 cut(s)	344
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	2 cut(s)	171, 470
MroI	TCCGGA	1 cut(s)	100
MroNI	GCCGGC	1 cut(s)	31
MspI	CCGG	3 cut(s)	32, 101, 167
MspR9I	CCNGG	1 cut(s)	167
Mva1269I	GAATGC	2 cut(s)	161, 695
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	4 cut(s)	32, 56, 75, 341
NaeI	GCCGGC	1 cut(s)	33
NarI	GGCGCC	1 cut(s)	344
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	2 cut(s)	184, 825
NgoMIV	GCCGGC	1 cut(s)	31
NlaIII	CATG	3 cut(s)	69, 628, 703
NlaIV	GGNNCC	6 cut(s)	13, 111, 175, 345, 588, 774
NmeAIII	GCCGAG	1 cut(s)	7
NspI	RCATGY	1 cut(s)	69
NspV	TTCGAA	1 cut(s)	416
PaeR7I	CTCGAG	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	2 cut(s)	311, 320
PctI	GAATGC	2 cut(s)	161, 695
PdiI	GCCGGC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	226
PflFI	GACNNNGTC	2 cut(s)	197, 313
PkrI	GCNGC	9 cut(s)	37, 58, 61, 96, 160, 301, 334, 403, 591
PleI	GAGTC	1 cut(s)	188
PluTI	GGCGCC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	188
PpuMI	RGGWCCY	1 cut(s)	772
PsiI	TTATAA	1 cut(s)	822
Psp5II	RGGWCCY	1 cut(s)	772
PspFI	CCCAGC	1 cut(s)	439
PspN4I	GGNNCC	6 cut(s)	13, 111, 175, 345, 588, 774
PspPI	GGNCC	3 cut(s)	174, 484, 772
PspPPI	RGGWCCY	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	825
PsyI	GACNNNGTC	2 cut(s)	197, 313
RsaI	GTAC	7 cut(s)	119, 263, 448, 506, 609, 837, 902
RsaNI	GTAC	7 cut(s)	118, 262, 447, 505, 608, 836, 901
SatI	GCNGC	9 cut(s)	36, 57, 60, 95, 159, 300, 333, 402, 590
Sau3AI	GATC	2 cut(s)	184, 825
Sau96I	GGNCC	3 cut(s)	174, 484, 772
ScaI	AGTACT	2 cut(s)	119, 506
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	6 cut(s)	141, 150, 467, 793, 800, 902
SfaNI	GCATC	2 cut(s)	106, 888
SfoI	GGCGCC	1 cut(s)	345
Sfr274I	CTCGAG	1 cut(s)	230
SfuI	TTCGAA	1 cut(s)	416
SinI	GGWCC	3 cut(s)	174, 484, 772
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	239, 611
SsiI	CCGC	9 cut(s)	35, 57, 60, 107, 300, 332, 401, 553, 590
SspDI	GGCGCC	1 cut(s)	343
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	3 cut(s)	357, 488, 603
TaiI	ACGT	1 cut(s)	902
TaqI	TCGA	4 cut(s)	224, 231, 416, 615
TaqII	GACCGA	2 cut(s)	187, 191
TasI	AATT	2 cut(s)	239, 611
TatI	WGTACW	5 cut(s)	117, 446, 504, 607, 835
TauI	GCSGC	7 cut(s)	38, 59, 62, 302, 335, 404, 592
TfiI	GAWTC	1 cut(s)	226
TscAI	CASTG	2 cut(s)	606, 652
TseI	GCWGC	2 cut(s)	94, 158
TspDTI	ATGAA	5 cut(s)	491, 509, 645, 666, 688
TspGWI	ACGGA	3 cut(s)	56, 320, 909
TspRI	CASTG	2 cut(s)	606, 652
Tth111I	GACNNNGTC	2 cut(s)	197, 313
VpaK11BI	GGWCC	3 cut(s)	174, 484, 772
XagI	CCTNNNNNAGG	1 cut(s)	152
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	1 cut(s)	69
XhoI	CTCGAG	1 cut(s)	230
XmaJI	CCTAGG	1 cut(s)	347
XmiI	GTMKAC	2 cut(s)	201, 288
XspI	CTAG	1 cut(s)	348
ZrmI	AGTACT	2 cut(s)	119, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.