Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8333667.1

Orthogroup ID

OG0011203

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 463

Gene Structure 463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8333667.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgatggaactagacaccaccaccacaaccatcatgggcgctctggccactctctcacctccccaactctccgatctcactcacaccctcctctccctctcccaccaccaccgccgccgcatctcctccctcctctcctctcccatcctctttgccctcaccatccgccgcctcaactccctctccctccaccacaagaccctcctcatcgcccgccacgtcatctcctccctccaccacctcgccctccacttccagcccgccgccaaagccccaccgccacgcgtcaagctgagagacctcgacgctgtcctcctcctcctcttgctctgcgaggcccaccagcacgaccctgacgccctccaagcccccaccgcgaaatggcgggaattactcggcaagttctactgtgacaccatgttaacggtttccggcatcggggcccaaaacgcgtcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009501 GO:0009536 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

152

Amino Acids

16.81

Weight (kDa)

9.51

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02750
fragaria_vesca	FvH4_6g14890
malus_domestica	MD04G1110800.v1.1 MD12G1130000.v1.1 MD15G1018600.v1.1
pyrus_communis	pycom04g10430 pycom12g12610
rosa_chinensis	RchiOBHm_Chr3g0468101
rosa_laevigata	RLG00000024449
rosa_multiflora	Rmu_co8333667.1_g000001 Rmu_sc0003659.1_g000014 Rmu_sc0012651.1_g000009 Rmu_sc0039822.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413050
rosa_rugosa	Rorug03G0092700
rosa_samantha	Rh3AG141100 Rh3BG162600 Rh3CG162400 Rh3DG163100
rosa_wichuraiana	Rw3G013330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	285, 377, 452
AcoI	YGGCCR	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	357
AfiI	CCNNNNNNNGG	2 cut(s)	381, 438
AflIII	ACRYGT	2 cut(s)	283, 450
AjiI	CACGTC	1 cut(s)	220
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	291
AoxI	GGCC	3 cut(s)	45, 336, 441
ApaI	GGGCCC	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	3 cut(s)	337, 441, 442
AsuHPI	GGTGA	2 cut(s)	48, 151
BaeGI	GKGCMC	1 cut(s)	445
BalI	TGGCCA	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	445
BccI	CCATC	3 cut(s)	38, 152, 170
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	1 cut(s)	11
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	4 cut(s)	115, 118, 169, 264
BlsI	GCNGC	4 cut(s)	116, 119, 170, 265
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	3 cut(s)	337, 441, 442
BmiI	GGNNCC	2 cut(s)	442, 443
BmsI	GCATC	2 cut(s)	129, 444
BsaHI	GRCGYC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	291
BsaXI	ACNNNNNCTCC	4 cut(s)	167, 197, 209, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 438
BseGI	GGATG	2 cut(s)	144, 162
BseLI	CCNNNNNNNGG	2 cut(s)	381, 438
BseMII	CTCAG	1 cut(s)	284
BseRI	GAGGAG	9 cut(s)	80, 115, 122, 127, 194, 217, 305, 308, 311
BseSI	GKGCMC	1 cut(s)	445
Bsh1236I	CGCG	3 cut(s)	285, 377, 452
BshFI	GGCC	3 cut(s)	47, 338, 443
BsiSI	CCGG	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	381, 438
BsmAI	GTCTC	1 cut(s)	291
BsnI	GGCC	3 cut(s)	47, 338, 443
Bso31I	GGTCTC	1 cut(s)	291
Bsp120I	GGGCCC	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	1 cut(s)	73
BspANI	GGCC	3 cut(s)	47, 338, 443
BspCNI	CTCAG	1 cut(s)	285
BspFNI	CGCG	3 cut(s)	285, 377, 452
BspLI	GGNNCC	2 cut(s)	442, 443
BspTNI	GGTCTC	1 cut(s)	291
BssMI	GATC	1 cut(s)	73
BssNI	GRCGYC	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	410, 427
BstACI	GRCGYC	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	214, 261
BstDEI	CTNAG	1 cut(s)	293
BstF5I	GGATG	2 cut(s)	144, 162
BstFNI	CGCG	3 cut(s)	285, 377, 452
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 365, 374, 449
BstSLI	GKGCMC	1 cut(s)	445
BstUI	CGCG	3 cut(s)	285, 377, 452
BsuRI	GGCC	3 cut(s)	47, 338, 443
BtgZI	GCGATG	1 cut(s)	193
BtrI	CACGTC	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	144, 162
Cac8I	GCNNGC	2 cut(s)	214, 261
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	3 cut(s)	337, 441, 442
CseI	GACGC	4 cut(s)	274, 314, 365, 441
CviAII	CATG	2 cut(s)	34, 418
CviJI	RGCY	7 cut(s)	47, 259, 272, 292, 338, 368, 443
CviKI_1	RGCY	7 cut(s)	47, 259, 272, 292, 338, 368, 443
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	445
Eco31I	GGTCTC	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	441
EcoT38I	GRGCYC	1 cut(s)	445
FaeI	CATG	2 cut(s)	37, 421
FaiI	YATR	2 cut(s)	35, 419
FatI	CATG	2 cut(s)	33, 417
FauI	CCCGC	3 cut(s)	221, 268, 378
Fnu4HI	GCNGC	4 cut(s)	115, 118, 169, 264
FokI	GGATG	2 cut(s)	131, 149
FriOI	GRGCYC	1 cut(s)	445
Fsp4HI	GCNGC	4 cut(s)	115, 118, 169, 264
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	4 cut(s)	115, 118, 169, 264
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	47, 338, 443
HapII	CCGG	1 cut(s)	432
HgaI	GACGC	4 cut(s)	274, 314, 365, 441
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	2 cut(s)	37, 421
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HpaI	GTTAAC	1 cut(s)	423
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	2 cut(s)	48, 151
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188I	TCNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	423
Hpy99I	CGWCG	1 cut(s)	308
HpyCH4III	ACNGT	2 cut(s)	410, 427
HpyCH4IV	ACGT	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 365, 374, 449
HpyF3I	CTNAG	1 cut(s)	293
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	37, 421
HspAI	GCGC	1 cut(s)	39
KspAI	GTTAAC	1 cut(s)	423
Kzo9I	GATC	1 cut(s)	73
LpnPI	CCDG	5 cut(s)	29, 269, 356, 366, 445
LweI	GCATC	2 cut(s)	129, 444
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	445
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	1 cut(s)	389
MluI	ACGCGT	2 cut(s)	283, 450
MluNI	TGGCCA	1 cut(s)	47
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	1 cut(s)	422
Msp20I	TGGCCA	1 cut(s)	47
MspI	CCGG	1 cut(s)	432
MvnI	CGCG	3 cut(s)	285, 377, 452
MwoI	GCNNNNNNNGC	4 cut(s)	269, 365, 374, 449
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	37, 421
NlaIV	GGNNCC	2 cut(s)	442, 443
NmeAIII	GCCGAG	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	4 cut(s)	116, 119, 170, 265
PspN4I	GGNNCC	2 cut(s)	442, 443
PspOMI	GGGCCC	1 cut(s)	441
PspPI	GGNCC	3 cut(s)	337, 441, 442
PsyI	GACNNNGTC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	4 cut(s)	115, 118, 169, 264
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	3 cut(s)	337, 441, 442
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	5 cut(s)	61, 222, 243, 294, 303
SfaNI	GCATC	2 cut(s)	129, 444
Sse9I	AATT	1 cut(s)	389
SspMI	CTAG	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	410, 427
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	303
TasI	AATT	1 cut(s)	389
TauI	GCSGC	4 cut(s)	117, 120, 171, 266
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TseFI	GTSAC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	410
Tth111I	GACNNNGTC	1 cut(s)	308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.