Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0011203

Physical Location & Seq

Genomic Coordinates Forward (+)

12384715 .. 12386471

Gene Structure 1757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG141100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGATGGAACTAGACACCACCACCACAACCATCATGGGCGCTCTGGCCACGCTCTCACCTCCCCAACTCTCCGATCTCACTCACACCCTCCTCTCCCTCTCCCACCACCACCGCCGCCGCATCTCCTCCCTCCTCTCCTCTCCCATCCTCTTTGCCCTCACCATCCGCCGCCTCAACTCCCTCTCCCTCCACCACAAGACCCTCCTCATCTCCCGCCACGTCATCTCCTCCCTCCACCACCTCGCCCTCCACTTCCAGCCCGCCGCCAAAGCCCCACCGCCACGCGTCAAGCTGAGAGACCTCGACGCTGTCCTCCTCCTCCTCTTGCTCTGCGAGGCCCACCAGCACGACCCTGACGCCCTCCAAGCCCCCACCGCGAAATGGCGGGAATTACTCGGCAAGTTCTACTGTGACACCATGTTAACGGTTTCCGGCATCGGGGCCCAAAACGCGTCGGTTTTGGTTTCGTACGTTGAAATGCTGACGAGGTGTTTGAGGTTCGTTAGTGCGATGGAGAGTTGTAGTTTTGGCGGGAAGGCTGGAAGGGAAGTGCCGGCGGCGAAAGCGGTGGTGGTGGCGCTGCCGTCGGTAGAGGTGAGAAGTGGTGGCGGCGGGCCCAAGGAGTGCGTGATATGTAAGGAGGAGATGGCGGAGAGCAGAGATGTGTGCGAGATGCCGTGCCGGCATTTGTTTCATTGGGTGTGTATTTTGCGGTGGCTGAGCAAGAGGAACACGTGTCCCTGCTGCCGCTTTGCGCTTCCGACGGATGATGTGTACGGTGAGATCCAGCGGCTGTGGAACGTTTTGGATAATGTGGCTTCGGAGAAGGGTTTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009501 GO:0009536 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

279

Amino Acids

30.9

Weight (kDa)

8.61

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	208 - 250	7.9e-13	Ring finger domain
zf-rbx1	PF12678	208 - 250	1.6e-06	RING-H2 zinc finger domain
zf-RING_11	PF17123	208 - 236	1.8e-06	RING-like zinc finger
zf-C3HC4_2	PF13923	208 - 249	5.2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02750
fragaria_vesca	FvH4_6g14890
malus_domestica	MD04G1110800.v1.1 MD12G1130000.v1.1 MD15G1018600.v1.1
pyrus_communis	pycom04g10430 pycom12g12610
rosa_chinensis	RchiOBHm_Chr3g0468101
rosa_laevigata	RLG00000024449
rosa_multiflora	Rmu_co8333667.1_g000001 Rmu_sc0003659.1_g000014 Rmu_sc0012651.1_g000009 Rmu_sc0039822.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413050
rosa_rugosa	Rorug03G0092700
rosa_samantha	Rh3AG141100 Rh3BG162600 Rh3CG162400 Rh3DG163100
rosa_wichuraiana	Rw3G013330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	285, 377, 452
AclI	AACGTT	1 cut(s)	801
AclWI	GGATC	1 cut(s)	778
AcoI	YGGCCR	1 cut(s)	45
AcvI	CACGTG	1 cut(s)	735
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	2 cut(s)	470, 776
AfiI	CCNNNNNNNGG	2 cut(s)	381, 438
AflIII	ACRYGT	4 cut(s)	283, 450, 732, 734
AgsI	TTSAA	1 cut(s)	476
AjiI	CACGTC	1 cut(s)	220
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	778
AlwNI	CAGNNNCTG	1 cut(s)	793
AoxI	GGCC	4 cut(s)	45, 336, 441, 614
ApaI	GGGCCC	2 cut(s)	445, 618
ApeKI	GCWGC	2 cut(s)	580, 744
ArsI	GACNNNNNNTTYG	2 cut(s)	475, 507
AspLEI	GCGC	3 cut(s)	41, 580, 757
AspS9I	GGNCC	5 cut(s)	337, 441, 442, 614, 615
AsuHPI	GGTGA	4 cut(s)	48, 151, 607, 791
BaeGI	GKGCMC	2 cut(s)	445, 618
BalI	TGGCCA	1 cut(s)	47
BanII	GRGCYC	2 cut(s)	445, 618
BbrPI	CACGTG	1 cut(s)	735
BbvI	GCAGC	2 cut(s)	567, 731
BccI	CCATC	5 cut(s)	38, 152, 170, 505, 640
BceAI	ACGGC	2 cut(s)	568, 661
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	1 cut(s)	11
BfoI	RGCGCY	2 cut(s)	42, 581
BglI	GCCNNNNNGGC	1 cut(s)	682
BlpI	GCTNAGC	1 cut(s)	719
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	5 cut(s)	337, 441, 442, 614, 615
BmiI	GGNNCC	3 cut(s)	442, 443, 616
BmsI	GCATC	3 cut(s)	129, 444, 663
Bpu1102I	GCTNAGC	1 cut(s)	719
BsaAI	YACGTR	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	618
BsaXI	ACNNNNNCTCC	4 cut(s)	167, 197, 209, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 438
Bse118I	RCCGGY	2 cut(s)	553, 681
BseDI	CCNNGG	1 cut(s)	618
BseGI	GGATG	3 cut(s)	144, 162, 772
BseLI	CCNNNNNNNGG	2 cut(s)	381, 438
BseMII	CTCAG	2 cut(s)	284, 710
BseSI	GKGCMC	2 cut(s)	445, 618
BseXI	GCAGC	2 cut(s)	567, 731
Bsh1236I	CGCG	3 cut(s)	285, 377, 452
BshFI	GGCC	4 cut(s)	47, 338, 443, 616
BsiSI	CCGG	3 cut(s)	432, 554, 682
BsiWI	CGTACG	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	723
BslI	CCNNNNNNNGG	2 cut(s)	381, 438
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	723
BsnI	GGCC	4 cut(s)	47, 338, 443, 616
Bso31I	GGTCTC	1 cut(s)	291
Bsp120I	GGGCCC	2 cut(s)	441, 614
Bsp1286I	GDGCHC	2 cut(s)	445, 618
Bsp143I	GATC	2 cut(s)	73, 783
Bsp1720I	GCTNAGC	1 cut(s)	719
BspANI	GGCC	4 cut(s)	47, 338, 443, 616
BspCNI	CTCAG	2 cut(s)	285, 711
BspFNI	CGCG	3 cut(s)	285, 377, 452
BspLI	GGNNCC	3 cut(s)	442, 443, 616
BspPI	GGATC	1 cut(s)	778
BspTNI	GGTCTC	1 cut(s)	291
BsrFI	RCCGGY	2 cut(s)	553, 681
BssAI	RCCGGY	2 cut(s)	553, 681
BssECI	CCNNGG	1 cut(s)	618
BssMI	GATC	2 cut(s)	73, 783
BssNI	GRCGYC	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	618
Bst4CI	ACNGT	3 cut(s)	410, 427, 779
BstACI	GRCGYC	1 cut(s)	357
BstBAI	YACGTR	1 cut(s)	735
BstC8I	GCNNGC	4 cut(s)	261, 555, 614, 683
BstDEI	CTNAG	2 cut(s)	293, 719
BstF5I	GGATG	3 cut(s)	144, 162, 772
BstFNI	CGCG	3 cut(s)	285, 377, 452
BstH2I	RGCGCY	2 cut(s)	42, 581
BstHHI	GCGC	3 cut(s)	41, 580, 757
BstKTI	GATC	2 cut(s)	76, 786
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	2 cut(s)	73, 783
BstMWI	GCNNNNNNNGC	6 cut(s)	269, 365, 374, 449, 563, 682
BstSLI	GKGCMC	2 cut(s)	445, 618
BstUI	CGCG	3 cut(s)	285, 377, 452
BstV1I	GCAGC	2 cut(s)	567, 731
BstX2I	RGATCY	1 cut(s)	783
BstYI	RGATCY	1 cut(s)	783
BsuRI	GGCC	4 cut(s)	47, 338, 443, 616
BtgZI	GCGATG	1 cut(s)	524
BtrI	CACGTC	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	144, 162, 772
Cac8I	GCNNGC	4 cut(s)	261, 555, 614, 683
CaiI	CAGNNNCTG	1 cut(s)	793
CfoI	GCGC	3 cut(s)	41, 580, 757
Cfr10I	RCCGGY	2 cut(s)	553, 681
Cfr13I	GGNCC	5 cut(s)	337, 441, 442, 614, 615
CseI	GACGC	4 cut(s)	274, 314, 365, 441
Csp6I	GTAC	2 cut(s)	469, 775
CviAII	CATG	2 cut(s)	34, 418
CviQI	GTAC	2 cut(s)	469, 775
DdeI	CTNAG	2 cut(s)	293, 719
DpnI	GATC	2 cut(s)	75, 785
DpnII	GATC	2 cut(s)	73, 783
EaeI	YGGCCR	1 cut(s)	45
EciI	GGCGGA	2 cut(s)	155, 665
Eco130I	CCWWGG	1 cut(s)	618
Eco24I	GRGCYC	2 cut(s)	445, 618
Eco31I	GGTCTC	1 cut(s)	291
Eco72I	CACGTG	1 cut(s)	735
EcoO109I	RGGNCCY	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	618
EcoT38I	GRGCYC	2 cut(s)	445, 618
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	2 cut(s)	37, 421
FaiI	YATR	3 cut(s)	35, 419, 634
FaqI	GGGAC	1 cut(s)	723
FatI	CATG	2 cut(s)	33, 417
FauI	CCCGC	5 cut(s)	221, 268, 378, 524, 605
FokI	GGATG	3 cut(s)	131, 149, 779
FriOI	GRGCYC	2 cut(s)	445, 618
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	3 cut(s)	40, 579, 756
HaeII	RGCGCY	2 cut(s)	42, 581
HaeIII	GGCC	4 cut(s)	47, 338, 443, 616
HapII	CCGG	3 cut(s)	432, 554, 682
HgaI	GACGC	4 cut(s)	274, 314, 365, 441
HhaI	GCGC	3 cut(s)	41, 580, 757
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	2 cut(s)	37, 421
Hin6I	GCGC	3 cut(s)	39, 578, 755
HinP1I	GCGC	3 cut(s)	39, 578, 755
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HpaI	GTTAAC	1 cut(s)	423
HpaII	CCGG	3 cut(s)	432, 554, 682
HphI	GGTGA	4 cut(s)	48, 151, 607, 791
Hpy166II	GTNNAC	2 cut(s)	423, 775
Hpy188I	TCNGA	3 cut(s)	73, 762, 823
Hpy8I	GTNNAC	2 cut(s)	423, 775
Hpy99I	CGWCG	4 cut(s)	308, 457, 589, 766
HpyAV	CCTTC	3 cut(s)	529, 537, 820
HpyCH4III	ACNGT	3 cut(s)	410, 427, 779
HpyCH4IV	ACGT	4 cut(s)	219, 471, 734, 801
HpyF10VI	GCNNNNNNNGC	6 cut(s)	269, 365, 374, 449, 563, 682
HpyF3I	CTNAG	2 cut(s)	293, 719
HpySE526I	ACGT	4 cut(s)	219, 471, 734, 801
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	37, 421
HspAI	GCGC	3 cut(s)	39, 578, 755
KroI	GCCGGC	2 cut(s)	553, 681
KroNI	GCCGGC	2 cut(s)	555, 683
KspAI	GTTAAC	1 cut(s)	423
Kzo9I	GATC	2 cut(s)	73, 783
Lsp1109I	GCAGC	2 cut(s)	567, 731
LweI	GCATC	3 cut(s)	129, 444, 663
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	4 cut(s)	219, 471, 734, 801
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	2 cut(s)	75, 785
MboI	GATC	2 cut(s)	73, 783
MflI	RGATCY	1 cut(s)	783
MhlI	GDGCHC	2 cut(s)	445, 618
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	1 cut(s)	389
MluI	ACGCGT	2 cut(s)	283, 450
MluNI	TGGCCA	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	785
Mox20I	TGGCCA	1 cut(s)	47
MroNI	GCCGGC	2 cut(s)	553, 681
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	2 cut(s)	422, 838
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	790
MspI	CCGG	3 cut(s)	432, 554, 682
MvnI	CGCG	3 cut(s)	285, 377, 452
MwoI	GCNNNNNNNGC	6 cut(s)	269, 365, 374, 449, 563, 682
NaeI	GCCGGC	2 cut(s)	555, 683
NdeII	GATC	2 cut(s)	73, 783
NgoMIV	GCCGGC	2 cut(s)	553, 681
NlaIII	CATG	2 cut(s)	37, 421
NlaIV	GGNNCC	3 cut(s)	442, 443, 616
NmeAIII	GCCGAG	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	410
PdiI	GCCGGC	2 cut(s)	555, 683
Pfl23II	CGTACG	1 cut(s)	468
PflFI	GACNNNGTC	1 cut(s)	308
PmaCI	CACGTG	1 cut(s)	735
PmlI	CACGTG	1 cut(s)	735
Ppu21I	YACGTR	1 cut(s)	735
Psp1406I	AACGTT	1 cut(s)	801
PspCI	CACGTG	1 cut(s)	735
PspLI	CGTACG	1 cut(s)	468
PspN4I	GGNNCC	3 cut(s)	442, 443, 616
PspOMI	GGGCCC	2 cut(s)	441, 614
PspPI	GGNCC	5 cut(s)	337, 441, 442, 614, 615
PstNI	CAGNNNCTG	1 cut(s)	793
PsuI	RGATCY	1 cut(s)	783
PsyI	GACNNNGTC	1 cut(s)	308
RsaI	GTAC	2 cut(s)	470, 776
RsaNI	GTAC	2 cut(s)	469, 775
SaqAI	TTAA	2 cut(s)	422, 838
Sau3AI	GATC	2 cut(s)	73, 783
Sau96I	GGNCC	5 cut(s)	337, 441, 442, 614, 615
SduI	GDGCHC	2 cut(s)	445, 618
SfaNI	GCATC	3 cut(s)	129, 444, 663
Sse9I	AATT	1 cut(s)	389
SspMI	CTAG	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	3 cut(s)	410, 427, 779
TaiI	ACGT	4 cut(s)	222, 474, 737, 804
TaqI	TCGA	1 cut(s)	303
TasI	AATT	1 cut(s)	389
TauI	GCSGC	8 cut(s)	117, 120, 171, 266, 560, 612, 750, 793
Tru1I	TTAA	2 cut(s)	422, 838
Tru9I	TTAA	2 cut(s)	422, 838
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	2 cut(s)	580, 744
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	1 cut(s)	683
TspGWI	ACGGA	1 cut(s)	779
Tth111I	GACNNNGTC	1 cut(s)	308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.