Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0011203

Physical Location & Seq

Genomic Coordinates Reverse (-)

35950848 .. 35951687

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024449

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGATGGAACTAGACACCACCACCACAACCATCATGGGCGCTCTGGCCACGCTCTCACCTCCCCAACTCTCCGATCTCACTCATACCCTCCTCTCCCTCTCCCACCACCACCGCCGCCGCATCTCCTCCCTCCTCTCCTCTCCCATCCTCTTTGCCCTCACCATCCGCCGCCTCAACTCCCTCTCCCTCCACCACAAGACCCTCCTCATCGCCCGCCACGTCATCTCCTCCCTCCACCACCTCGCCCTCCACTTCCAGCCCGTCGCCAAAGCCCCACCGCCACGCGTCAAGCTGAGAGACCTCGACGCCGTCCTCCTCCTCCTCTTGCTCTGCGAGGCCCACCAGCACGACCCTGACGCCCTCCAAGCCCCCACCGCGAAATGGCGGGAAGTGCTCGGCAAGTTCTACTGTGACACCATGTTAACGGTTTCCGGCATCGAGGCCCACCAAGCGTCGGTTTTGGTTTCGTACGTCGAGATGCTGACGAGGTGTTTGAGGTTCGTTAGTGCGATGGAGAGTTGTAGTTTTGGCGGGAAGACAGGGAGGGAAGTGCCGGCGGCGAAAGAGGTGGTGGTGGGGCTGCCGTCGGTGGAGGTGAGAAGTGGTGGCGGCGGGCCCAAGGAGTGCGTGATATGTAAGGAAGAGATGGCGGAGAACAGAGATGTGTGCGAGCTGCCGTGCCGGCATTTGTTTCATTGGGTGTGTATTTTGCGGTGGCTGAGCAAGAGGAACACGTGTCCCTGCTGCCGCTTTGGGCTTCCGACGGATGATGTGTACGGCGAGATCCAGCGGCTGTGGGACGTTTTGGATAATGTGGCTTCGGAGAAGGGTTTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009501 GO:0009536 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

280

Amino Acids

31.06

Weight (kDa)

8.0

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	208 - 250	5.8e-13	Ring finger domain
zf-RING_11	PF17123	208 - 236	6.9e-07	RING-like zinc finger
zf-rbx1	PF12678	208 - 250	1.8e-06	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	208 - 249	5.5e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02750
fragaria_vesca	FvH4_6g14890
malus_domestica	MD04G1110800.v1.1 MD12G1130000.v1.1 MD15G1018600.v1.1
pyrus_communis	pycom04g10430 pycom12g12610
rosa_chinensis	RchiOBHm_Chr3g0468101
rosa_laevigata	RLG00000024449
rosa_multiflora	Rmu_co8333667.1_g000001 Rmu_sc0003659.1_g000014 Rmu_sc0012651.1_g000009 Rmu_sc0039822.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413050
rosa_rugosa	Rorug03G0092700
rosa_samantha	Rh3AG141100 Rh3BG162600 Rh3CG162400 Rh3DG163100
rosa_wichuraiana	Rw3G013330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	285, 377
AclWI	GGATC	1 cut(s)	778
AcoI	YGGCCR	1 cut(s)	45
AcvI	CACGTG	1 cut(s)	735
AcyI	GRCGYC	2 cut(s)	306, 357
AfaI	GTAC	2 cut(s)	470, 776
AfiI	CCNNNNNNNGG	2 cut(s)	381, 454
AflIII	ACRYGT	3 cut(s)	283, 732, 734
AjiI	CACGTC	1 cut(s)	220
AluBI	AGCT	2 cut(s)	292, 673
AluI	AGCT	2 cut(s)	292, 673
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	778
AlwNI	CAGNNNCTG	1 cut(s)	793
AoxI	GGCC	4 cut(s)	45, 336, 441, 614
ApaI	GGGCCC	1 cut(s)	618
ApeKI	GCWGC	3 cut(s)	580, 673, 744
ArsI	GACNNNNNNTTYG	2 cut(s)	475, 507
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	4 cut(s)	337, 442, 614, 615
AsuHPI	GGTGA	3 cut(s)	48, 151, 607
BaeGI	GKGCMC	1 cut(s)	618
BalI	TGGCCA	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	618
BbrPI	CACGTG	1 cut(s)	735
BbsI	GAAGAC	1 cut(s)	542
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	3 cut(s)	567, 660, 731
BccI	CCATC	5 cut(s)	38, 152, 170, 505, 640
BceAI	ACGGC	4 cut(s)	293, 568, 661, 793
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	1 cut(s)	11
BfoI	RGCGCY	1 cut(s)	42
BglI	GCCNNNNNGGC	1 cut(s)	682
BlpI	GCTNAGC	1 cut(s)	719
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	4 cut(s)	337, 442, 614, 615
BmiI	GGNNCC	1 cut(s)	616
BmsI	GCATC	3 cut(s)	129, 444, 468
BpiI	GAAGAC	1 cut(s)	542
Bpu1102I	GCTNAGC	1 cut(s)	719
BsaAI	YACGTR	1 cut(s)	735
BsaHI	GRCGYC	2 cut(s)	306, 357
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	618
BsaXI	ACNNNNNCTCC	4 cut(s)	167, 197, 209, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 454
Bse118I	RCCGGY	2 cut(s)	553, 681
BseDI	CCNNGG	1 cut(s)	618
BseGI	GGATG	3 cut(s)	144, 162, 772
BseLI	CCNNNNNNNGG	2 cut(s)	381, 454
BseMII	CTCAG	2 cut(s)	284, 710
BseRI	GAGGAG	9 cut(s)	80, 115, 122, 127, 194, 217, 305, 308, 311
BseSI	GKGCMC	1 cut(s)	618
BseXI	GCAGC	3 cut(s)	567, 660, 731
Bsh1236I	CGCG	2 cut(s)	285, 377
BshFI	GGCC	4 cut(s)	47, 338, 443, 616
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	3 cut(s)	432, 554, 682
BsiWI	CGTACG	1 cut(s)	468
BslFI	GGGAC	2 cut(s)	723, 812
BslI	CCNNNNNNNGG	2 cut(s)	381, 454
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	2 cut(s)	723, 812
BsnI	GGCC	4 cut(s)	47, 338, 443, 616
Bso31I	GGTCTC	1 cut(s)	291
Bsp120I	GGGCCC	1 cut(s)	614
Bsp1286I	GDGCHC	2 cut(s)	396, 618
Bsp143I	GATC	2 cut(s)	73, 783
Bsp1720I	GCTNAGC	1 cut(s)	719
BspANI	GGCC	4 cut(s)	47, 338, 443, 616
BspCNI	CTCAG	2 cut(s)	285, 711
BspFNI	CGCG	2 cut(s)	285, 377
BspLI	GGNNCC	1 cut(s)	616
BspPI	GGATC	1 cut(s)	778
BspTNI	GGTCTC	1 cut(s)	291
BsrFI	RCCGGY	2 cut(s)	553, 681
BssAI	RCCGGY	2 cut(s)	553, 681
BssECI	CCNNGG	1 cut(s)	618
BssMI	GATC	2 cut(s)	73, 783
BssNI	GRCGYC	2 cut(s)	306, 357
BssT1I	CCWWGG	1 cut(s)	618
Bst4CI	ACNGT	2 cut(s)	410, 427
Bst6I	CTCTTC	1 cut(s)	636
BstACI	GRCGYC	2 cut(s)	306, 357
BstBAI	YACGTR	1 cut(s)	735
BstC8I	GCNNGC	5 cut(s)	214, 555, 614, 671, 683
BstDEI	CTNAG	2 cut(s)	293, 719
BstF5I	GGATG	3 cut(s)	144, 162, 772
BstFNI	CGCG	2 cut(s)	285, 377
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	2 cut(s)	76, 786
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	2 cut(s)	73, 783
BstMWI	GCNNNNNNNGC	5 cut(s)	365, 374, 391, 449, 682
BstSLI	GKGCMC	1 cut(s)	618
BstUI	CGCG	2 cut(s)	285, 377
BstV1I	GCAGC	3 cut(s)	567, 660, 731
BstV2I	GAAGAC	1 cut(s)	542
BstX2I	RGATCY	1 cut(s)	783
BstYI	RGATCY	1 cut(s)	783
BsuRI	GGCC	4 cut(s)	47, 338, 443, 616
BtgZI	GCGATG	2 cut(s)	193, 524
BtrI	CACGTC	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	144, 162, 772
Cac8I	GCNNGC	5 cut(s)	214, 555, 614, 671, 683
CaiI	CAGNNNCTG	1 cut(s)	793
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	2 cut(s)	553, 681
Cfr13I	GGNCC	4 cut(s)	337, 442, 614, 615
CseI	GACGC	4 cut(s)	274, 314, 365, 441
Csp6I	GTAC	2 cut(s)	469, 775
CviAII	CATG	2 cut(s)	34, 418
CviQI	GTAC	2 cut(s)	469, 775
DdeI	CTNAG	2 cut(s)	293, 719
DpnI	GATC	2 cut(s)	75, 785
DpnII	GATC	2 cut(s)	73, 783
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
EciI	GGCGGA	2 cut(s)	155, 665
Eco130I	CCWWGG	1 cut(s)	618
Eco24I	GRGCYC	1 cut(s)	618
Eco31I	GGTCTC	1 cut(s)	291
Eco72I	CACGTG	1 cut(s)	735
EcoT14I	CCWWGG	1 cut(s)	618
EcoT38I	GRGCYC	1 cut(s)	618
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	2 cut(s)	37, 421
FaiI	YATR	4 cut(s)	35, 84, 419, 634
FaqI	GGGAC	2 cut(s)	723, 812
FatI	CATG	2 cut(s)	33, 417
FauI	CCCGC	4 cut(s)	221, 378, 524, 605
FokI	GGATG	3 cut(s)	131, 149, 779
FriOI	GRGCYC	1 cut(s)	618
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	4 cut(s)	47, 338, 443, 616
HapII	CCGG	3 cut(s)	432, 554, 682
HgaI	GACGC	4 cut(s)	274, 314, 365, 441
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	2 cut(s)	306, 357
Hin1II	CATG	2 cut(s)	37, 421
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HpaI	GTTAAC	1 cut(s)	423
HpaII	CCGG	3 cut(s)	432, 554, 682
HphI	GGTGA	3 cut(s)	48, 151, 607
Hpy166II	GTNNAC	2 cut(s)	423, 775
Hpy188I	TCNGA	3 cut(s)	73, 762, 823
Hpy188III	TCNNGA	1 cut(s)	475
Hpy8I	GTNNAC	2 cut(s)	423, 775
Hpy99I	CGWCG	6 cut(s)	266, 308, 457, 476, 589, 766
HpyAV	CCTTC	1 cut(s)	820
HpyCH4III	ACNGT	2 cut(s)	410, 427
HpyCH4IV	ACGT	4 cut(s)	219, 471, 734, 801
HpyF10VI	GCNNNNNNNGC	5 cut(s)	365, 374, 391, 449, 682
HpyF3I	CTNAG	2 cut(s)	293, 719
HpySE526I	ACGT	4 cut(s)	219, 471, 734, 801
Hsp92I	GRCGYC	2 cut(s)	306, 357
Hsp92II	CATG	2 cut(s)	37, 421
HspAI	GCGC	1 cut(s)	39
KroI	GCCGGC	2 cut(s)	553, 681
KroNI	GCCGGC	2 cut(s)	555, 683
KspAI	GTTAAC	1 cut(s)	423
Kzo9I	GATC	2 cut(s)	73, 783
Lsp1109I	GCAGC	3 cut(s)	567, 660, 731
LweI	GCATC	3 cut(s)	129, 444, 468
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	4 cut(s)	219, 471, 734, 801
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	2 cut(s)	75, 785
MboI	GATC	2 cut(s)	73, 783
MboII	GAAGA	2 cut(s)	547, 653
MflI	RGATCY	1 cut(s)	783
MhlI	GDGCHC	2 cut(s)	396, 618
MlsI	TGGCCA	1 cut(s)	47
MluI	ACGCGT	1 cut(s)	283
MluNI	TGGCCA	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	785
Mox20I	TGGCCA	1 cut(s)	47
MroNI	GCCGGC	2 cut(s)	553, 681
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	2 cut(s)	422, 838
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	790
MspI	CCGG	3 cut(s)	432, 554, 682
MvnI	CGCG	2 cut(s)	285, 377
MwoI	GCNNNNNNNGC	5 cut(s)	365, 374, 391, 449, 682
NaeI	GCCGGC	2 cut(s)	555, 683
NdeII	GATC	2 cut(s)	73, 783
NgoMIV	GCCGGC	2 cut(s)	553, 681
NlaIII	CATG	2 cut(s)	37, 421
NlaIV	GGNNCC	1 cut(s)	616
NmeAIII	GCCGAG	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdiI	GCCGGC	2 cut(s)	555, 683
Pfl23II	CGTACG	1 cut(s)	468
PflFI	GACNNNGTC	1 cut(s)	308
PmaCI	CACGTG	1 cut(s)	735
PmlI	CACGTG	1 cut(s)	735
Ppu21I	YACGTR	1 cut(s)	735
PspCI	CACGTG	1 cut(s)	735
PspLI	CGTACG	1 cut(s)	468
PspN4I	GGNNCC	1 cut(s)	616
PspOMI	GGGCCC	1 cut(s)	614
PspPI	GGNCC	4 cut(s)	337, 442, 614, 615
PstNI	CAGNNNCTG	1 cut(s)	793
PsuI	RGATCY	1 cut(s)	783
PsyI	GACNNNGTC	1 cut(s)	308
RsaI	GTAC	2 cut(s)	470, 776
RsaNI	GTAC	2 cut(s)	469, 775
SaqAI	TTAA	2 cut(s)	422, 838
Sau3AI	GATC	2 cut(s)	73, 783
Sau96I	GGNCC	4 cut(s)	337, 442, 614, 615
SduI	GDGCHC	2 cut(s)	396, 618
SfaNI	GCATC	3 cut(s)	129, 444, 468
SspMI	CTAG	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	2 cut(s)	410, 427
TaiI	ACGT	4 cut(s)	222, 474, 737, 804
TaqI	TCGA	3 cut(s)	303, 438, 474
TauI	GCSGC	7 cut(s)	117, 120, 171, 560, 612, 750, 793
Tru1I	TTAA	2 cut(s)	422, 838
Tru9I	TTAA	2 cut(s)	422, 838
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	3 cut(s)	580, 673, 744
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	1 cut(s)	683
TspGWI	ACGGA	1 cut(s)	779
Tth111I	GACNNNGTC	1 cut(s)	308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.