Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012636

Physical Location & Seq

Genomic Coordinates Reverse (-)

9856843 .. 9857529

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCAGCCAAGCTCTCCAAGATATGTTTCTGCATCATTACTCTGCTCTCTGTAACAATGGCCGCCTCAGCGGCAAACTACACAATGCCGGCAGACGATGAGCTTCCATTCTCTTCTTCATCTCCGTCTCCTTATTCCGAGCCTCCTGAAAGCGGAGGAGATGCTTCGCTCTCTTCAGATGCATCGGAATATTCTCCACCACCACCACCACCTTATATCGATGCCTTAGCAGCAGAAGAAGCACAGCAGCTCAATCTCTCTCCAGCCTACTCTCCTTCCCCAGCTCCTTACTTCACACAATACCATTCTTCTCCTCCTTACGCTGAAGTTGAGGCTCCTGAAGTCTACGAGCTCTACACTCCAACTCAAGCTCCGGCACCAGAACCATCTTCTGTGTTCGGATCCGAACCATTATCAGATACTGAGCCTATTGCTAGTTCTCCTGACTCTGACATGGCTCCTAACCCTACTGTACTGCCATCCAACTACAGAGCGGAGGACGAGAGTGTTGAATTTGACGATGAGTATTATAGTTCGGAGCAGAGTAAGAACAGGGTAACAATGGTTGGTTTTGTTCTTGGTGCTGTGTGCGTGGTTGGATTGGCGGGTATTGTGTTCAATAAGAAGAAATATAACAAGTCAAAAGCAGACTACGATTACGAATTGGCTAAGAGAGAGGATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

24.53

Weight (kDa)

4.08

Isoelectric Point (pI)

73.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15790 FvH4_6g15810
prunus_persica	Prupe.6G237100_v2.0.a1
pyrus_communis	pycom04g09370 pycom12g11790
rosa_laevigata	RLG00000024343 RLG00000024344
rosa_multiflora	Rmu_sc0004871.1_g000009
rosa_roxburghii	Rroxscaffold_6G00411800
rosa_rugosa	Rorug03G0102300
rosa_samantha	Rh3AG151600 Rh3AG151700 Rh3BG175100 Rh3BG175200 Rh3CG166300 Rh3CG166500 Rh3DG200300 Rh3DG200400
rosa_wichuraiana	Rw3G014290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	376
AccBSI	CCGCTC	1 cut(s)	494
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	5 cut(s)	63, 71, 153, 494, 605
AclWI	GGATC	2 cut(s)	396, 409
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	512
AcuI	CTGAAG	3 cut(s)	159, 345, 360
AfaI	GTAC	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	512, 619
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	6 cut(s)	13, 103, 250, 284, 352, 371
AluI	AGCT	6 cut(s)	13, 103, 250, 284, 352, 371
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	2 cut(s)	396, 409
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	3 cut(s)	5, 230, 247
ApoI	RAATTY	1 cut(s)	512
BamHI	GGATCC	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	17, 242, 259
BccI	CCATC	2 cut(s)	394, 487
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	487
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	5 cut(s)	6, 63, 72, 231, 248
BlsI	GCNGC	5 cut(s)	7, 64, 73, 232, 249
BmiI	GGNNCC	4 cut(s)	336, 378, 403, 459
BmsI	GCATC	5 cut(s)	42, 151, 169, 191, 211
BplI	GAGNNNNNCTC	1 cut(s)	666
BpmI	CTGGAG	1 cut(s)	246
Bpu10I	CCTNAGC	2 cut(s)	67, 226
BpuEI	CTTGAG	1 cut(s)	351
Bsa29I	ATCGAT	1 cut(s)	219
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse118I	RCCGGY	1 cut(s)	88
BseCI	ATCGAT	1 cut(s)	219
BseGI	GGATG	1 cut(s)	479
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMII	CTCAG	2 cut(s)	81, 414
BseRI	GAGGAG	2 cut(s)	171, 303
BseXI	GCAGC	3 cut(s)	17, 242, 259
BseYI	CCCAGC	1 cut(s)	280
BshFI	GGCC	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	376
BshVI	ATCGAT	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	89, 374
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	132
BsmBI	CGTCTC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	401, 679
BspACI	CCGC	5 cut(s)	63, 71, 153, 494, 605
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	2 cut(s)	80, 415
BspDI	ATCGAT	1 cut(s)	219
BspLI	GGNNCC	4 cut(s)	336, 378, 403, 459
BspPI	GGATC	2 cut(s)	396, 409
BspT107I	GGYRCC	1 cut(s)	376
BsrBI	CCGCTC	1 cut(s)	494
BsrFI	RCCGGY	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	88
BssMI	GATC	2 cut(s)	401, 679
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	2 cut(s)	118, 178
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	4 cut(s)	67, 226, 423, 669
BstF5I	GGATG	1 cut(s)	479
BstKTI	GATC	2 cut(s)	404, 682
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	401, 679
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 71, 230, 239
BstSFI	CTRYAG	1 cut(s)	487
BstV1I	GCAGC	3 cut(s)	17, 242, 259
BstX2I	RGATCY	2 cut(s)	401, 679
BstYI	RGATCY	2 cut(s)	401, 679
Bsu15I	ATCGAT	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	62
BsuTUI	ATCGAT	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	479
Cac8I	GCNNGC	1 cut(s)	90
CaiI	CAGNNNCTG	1 cut(s)	422
Cfr10I	RCCGGY	1 cut(s)	88
ClaI	ATCGAT	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	473
CviAII	CATG	1 cut(s)	454
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	4 cut(s)	67, 226, 423, 669
DpnI	GATC	2 cut(s)	403, 681
DpnII	GATC	2 cut(s)	401, 679
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	2 cut(s)	118, 178
EarI	CTCTTC	2 cut(s)	118, 178
Ecl136II	GAGCTC	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	3 cut(s)	159, 345, 360
EcoICRI	GAGCTC	1 cut(s)	352
EcoT22I	ATGCAT	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	1 cut(s)	457
FaiI	YATR	5 cut(s)	25, 216, 455, 531, 633
FatI	CATG	1 cut(s)	453
FauI	CCCGC	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	5 cut(s)	6, 63, 72, 231, 248
FokI	GGATG	1 cut(s)	466
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	5 cut(s)	6, 63, 72, 231, 248
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	5 cut(s)	6, 63, 72, 231, 248
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	2 cut(s)	89, 374
Hin1II	CATG	1 cut(s)	457
HinfI	GANTC	1 cut(s)	446
HpaII	CCGG	2 cut(s)	89, 374
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	9 cut(s)	139, 178, 187, 401, 406, 418, 451, 538, 686
Hpy188III	TCNNGA	3 cut(s)	146, 338, 443
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	1 cut(s)	285
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4V	TGCA	2 cut(s)	33, 182
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 71, 230, 239
HpyF3I	CTNAG	4 cut(s)	67, 226, 423, 669
Hsp92II	CATG	1 cut(s)	457
KroI	GCCGGC	1 cut(s)	88
KroNI	GCCGGC	1 cut(s)	90
Kzo9I	GATC	2 cut(s)	401, 679
LmnI	GCTCC	5 cut(s)	289, 340, 376, 463, 538
LpnPI	CCDG	9 cut(s)	102, 159, 276, 294, 351, 387, 393, 456, 538
Lsp1109I	GCAGC	3 cut(s)	17, 242, 259
LweI	GCATC	5 cut(s)	42, 151, 169, 191, 211
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	52, 556
MalI	GATC	2 cut(s)	403, 681
MbiI	CCGCTC	1 cut(s)	494
MboI	GATC	2 cut(s)	401, 679
MboII	GAAGA	7 cut(s)	105, 108, 165, 248, 300, 381, 637
MflI	RGATCY	2 cut(s)	401, 679
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	2 cut(s)	512, 662
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	3 cut(s)	386, 507, 577
MnlI	CCTC	7 cut(s)	76, 149, 153, 324, 325, 490, 670
Mph1103I	ATGCAT	1 cut(s)	184
MroNI	GCCGGC	1 cut(s)	88
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	89, 374
MwoI	GCNNNNNNNGC	4 cut(s)	68, 71, 230, 239
NaeI	GCCGGC	1 cut(s)	90
NdeII	GATC	2 cut(s)	401, 679
NgoMIV	GCCGGC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	4 cut(s)	336, 378, 403, 459
NsiI	ATGCAT	1 cut(s)	184
PdiI	GCCGGC	1 cut(s)	90
PkrI	GCNGC	5 cut(s)	7, 64, 73, 232, 249
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
Psp124BI	GAGCTC	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	280
PspN4I	GGNNCC	4 cut(s)	336, 378, 403, 459
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	2 cut(s)	401, 679
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	354
SatI	GCNGC	5 cut(s)	6, 63, 72, 231, 248
Sau3AI	GATC	2 cut(s)	401, 679
SchI	GAGTC	1 cut(s)	440
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	7 cut(s)	15, 105, 214, 252, 286, 354, 373
SfaNI	GCATC	5 cut(s)	42, 151, 169, 191, 211
SfcI	CTRYAG	1 cut(s)	487
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	2 cut(s)	512, 662
SsiI	CCGC	5 cut(s)	63, 71, 153, 494, 605
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	1 cut(s)	435
SstI	GAGCTC	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	472
TaqI	TCGA	1 cut(s)	219
TasI	AATT	2 cut(s)	512, 662
TatI	WGTACW	1 cut(s)	472
TauI	GCSGC	2 cut(s)	65, 74
TseI	GCWGC	3 cut(s)	5, 230, 247
TspDTI	ATGAA	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	114
XapI	RAATTY	1 cut(s)	512
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	1 cut(s)	435
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.