Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Forward (+)

8041016 .. 8046698

Gene Structure 5683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0102300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2685 bp

ATGTGTATACTTTGTGTGATTCAGAAGTGGTCTCGCCGGGTAGCTACGATGCTTCCTTGGTTAGTTATTCCATTAATAGGACTATGGGCTCTCTCTCAGCTTCTACCGCCGGCTTTTCGATTCGAGATTACTTCGCCCAGGCTCGCCTGTGTTTTTGTGCTCCTGGTTACTCTCTTTTGGTACGAGATTTTGATGCCCCAGCTCTCGGCGTGGAGGGTGCGGCGCAATGCCAGGCTTAGGGAGAGGAAGAGGTTTGAGGCTATAGAGTTGCAGAAGCTGAGGAAAACAGCAACGAGGCGGTGCAGGAATTGCTTGACTCCGTATAGGGATCAGAATCCTGGCGGTGGTCGGTTTATGTGTTCGTATTGTGGCCATATTTCTAAGAGGCCGGTTTTGGACTTACCTGTGCTCCCTGGGATGGGACTTTCGAATTCGGGGATTATCAGGGATTTGGTTGGAAAGGGCGGAAAGATATTGAATGGGAAGGTGTGGTCTGAGAATGGGTGGATGTGTGGTCAAGATTGGTTGGAGAATGGCAATTGGGTTAGTGGTTCTATAGGTGGGAAATCTAGTTACTGGAAGAAGGATGGGAGTAGTGTTTTTGGGGGGGATGAGAATTGTTTGGCAGAGAAGTCTTATTCAGGTGTCGTTATTTTTGCCTGCAAGCTACTGACCTCATTTTTCTTGAGTGTTAGATGGCTTTGGAGAAAGATTTTTAGGATTAGTACATCAGGAGATGATGCTGCATCTGATGCAGAGCATAAAGCAATGTTGGCCAAGAGGGGTGAGAATGGGGTCAACTTTCAAGAGAGTAGAGGAGAAAAGGCACGCAGAAAAGCTGAAGAAAAGAGACAAGCTAGGATAGAGAAGGAGCTCTTAGAGGAGGAAGAGAGAAAACAAAGGGAGGAAGTTGCAAGGTTGGTGGAGGAACGCAGGAGACTTAGGGATGAGAAAAAGGAAGCTGAAAGAGGAGATCGTGGGAAAACATCGCCACCTGTGAGGGAGAAAGATAGTAAGAAGGAAGCAGAAAAGAAACGTCAGGATAGAAGGAAAGATAAAGACAAGGGTTCTAGCAAGAGCAATTCTGATGCAGAAGAGTTGGAAAAGAGAGCAGGTAAGGAGAGTGACCGGAAACGGGACTTTGACAAGAAGAATGACAATGAACGTCGGGAACTTCCGAAATCTGGGACAGATTTTCTCAAGGGTCAAAGCACGGAGGTGGGGTATGGTGCAAAGAATCTATCTGCAAACAATACAGTGAGGGGAAATGCTGGATCTAGGTACCTGGACCGCATGAGGGGTACAATTTTTTCTTCTTCAAAAGCATTCAGCGGAGGTAGTTTCTTTGGAAAGGGTGCTAATACTACAGTGACAAAAGAAACCAAATCTAGCATTTCCGTGGATCACGTCCATAGTCCTGCCCACAGGAGAGACTTATTTCCACCTGAACGCGTAGCTGCTAGACCTTTTATGAATGGAGATGATAAGAGTATCAGCCGCCCTATTCAGTCTGAATCACAGCCAGGGACAGCAAAAAAATCATGGCAGCAATTATTTACTCGTTCATCATCCGTTCCTGCATCCTCGAGTGTAAATGTAATTAGTAGACCAAATGCAAAGTCCCAAACAGAAGTACAAACTCCTGTGATATCTGGTCAACCATCATCAATACAATCTTTTGACAATCCAATTAATTTTGGTCTGCCATCACCATTCACTATATCTCCCTTTCCTAATGGAGTCACTAGCAGCAGTTTAGGCTTTTCTCCTGCAGTTGAACCCATGTTCCCTCGCATTGGAGAAGGGCATCATGAACCGATACCTGAAGAGCCAGAGCTTTTTGAAGACCCATGTTATGTTCCCGATCCAGTATCTTTGCTTGGGCCCGTCTCCGAGTCGCTTGATAATTTTCAGTTAGACATGGGGGCTGGCTTCGTGACAGATGTGGGATTGGAGAGGCCTCGCACATTAAAGAATGTATCTGCTTCTTCTGATCTCAACAAGCCATCTCCAATTGAGTCACCTTTGTCACGAGAAAAACATAATTGTAATCGTGTTCCAAGTACGCCAAAGGCCCAGGATATGCATTCTCCACCCCTAGATGATGCAAATGCAAATGATAAGGGTACGTGGCAAATGTGGAATAGTTGTCCTCTTGGTCAGGAAGGTCTAGGTTTATCAGGCGGCCCAGCAAGCTGGCTTTTACCTCCTGAACTGAACAGATCCAACAAGGATGATCTTGTGCACCCTTCATCTCATATGTCACTGTTTTCAACAGAAGAGCAGGTTGTTCCTGGCCCCCATTCTCCTCGGCATCAGAGCATATTCCTTGGTAATGGGCATAATGGTGGGACATTTAGCCCTGTGACTGGTTCAAGTGATCATGATCCTTGGTTACAGAAAGCATTTTTTCCACCATTGTCAACCGCTGAAACCCATTATCCTCTCAAACCTCCAGAGGAAGCTACTAAAAATGAAAGATTTTTTGCGAGTCCCAGCAGATCTACTACCAATCATGCGTTTGAGCTGTCTCCAGGAAATGGCTGGTCCAAGAAGGAATCGATTGAATGCGGTGTGCAGGGTACAGCAGGGGAAGGTGTTGGAAAGCCATCAGTTCTGAGGCCTCATGTCAGGGGTCCTTATCCGCCAACCCCAGATGTACAGTCACTTTGGTCTTATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

894

Amino Acids

99.42

Weight (kDa)

9.29

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1103, 2275
Acc65I	GGTACC	1 cut(s)	1281
AccB1I	GGYRCC	1 cut(s)	1281
AccB7I	CCANNNNNTGG	1 cut(s)	2540
AccI	GTMKAC	2 cut(s)	7, 1606
AccII	CGCG	1 cut(s)	1452
AclWI	GGATC	6 cut(s)	336, 1282, 1410, 1859, 2217, 2381
AcoI	YGGCCR	2 cut(s)	370, 774
AcsI	RAATTY	1 cut(s)	430
AcuI	CTGAAG	2 cut(s)	861, 1845
AfaI	GTAC	9 cut(s)	182, 727, 1283, 1303, 1635, 2065, 2128, 2584, 2661
AflIII	ACRYGT	1 cut(s)	1450
AgsI	TTSAA	8 cut(s)	478, 806, 1320, 1778, 1844, 2274, 2376, 2567
AjiI	CACGTC	1 cut(s)	1408
AleI	CACNNNNGTG	1 cut(s)	1217
AloI	GAACNNNNNNTCC	2 cut(s)	1770, 1802
Alw21I	GWGCWC	4 cut(s)	162, 411, 876, 2247
Alw26I	GTCTC	6 cut(s)	36, 844, 931, 1425, 1894, 2535
Alw44I	GTGCAC	1 cut(s)	2243
AlwI	GGATC	6 cut(s)	336, 1282, 1410, 1859, 2217, 2381
AlwNI	CAGNNNCTG	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	1585
AoxI	GGCC	9 cut(s)	370, 386, 774, 1883, 1958, 2073, 2185, 2296, 2621
ApaI	GGGCCC	1 cut(s)	1887
ApaLI	GTGCAC	1 cut(s)	2243
ApeKI	GCWGC	4 cut(s)	743, 1457, 1546, 1749
ApoI	RAATTY	1 cut(s)	430
ArsI	GACNNNNNNTTYG	2 cut(s)	1604, 1636
AseI	ATTAAT	2 cut(s)	74, 1692
Asp718I	GGTACC	1 cut(s)	1281
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	8 cut(s)	1288, 1883, 1884, 2074, 2186, 2297, 2547, 2636
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	3 cut(s)	797, 1701, 2013
AsuII	TTCGAA	1 cut(s)	428
AvaI	CYCGRG	1 cut(s)	1585
AvaII	GGWCC	3 cut(s)	1288, 2547, 2636
BaeGI	GKGCMC	2 cut(s)	1887, 2247
BalI	TGGCCA	2 cut(s)	372, 776
BanI	GGYRCC	1 cut(s)	1281
BanII	GRGCYC	3 cut(s)	91, 876, 1887
BauI	CACGAG	1 cut(s)	2031
BbsI	GAAGAC	1 cut(s)	1851
Bbv12I	GWGCWC	4 cut(s)	162, 411, 876, 2247
BbvCI	CCTCAGC	1 cut(s)	278
BbvI	GCAGC	4 cut(s)	730, 1444, 1558, 1761
BccI	CCATC	7 cut(s)	412, 581, 690, 1669, 1714, 2014, 2617
BclI	TGATCA	1 cut(s)	2380
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	6 cut(s)	36, 844, 931, 1425, 1894, 2535
BfaI	CTAG	9 cut(s)	570, 858, 1071, 1278, 1389, 1461, 1746, 2099, 2171
BfmI	CTRYAG	4 cut(s)	261, 555, 1365, 1770
BfuAI	ACCTGC	2 cut(s)	1103, 2275
BglII	AGATCT	1 cut(s)	2501
BisI	GCNGC	7 cut(s)	221, 744, 1458, 1498, 1547, 1750, 2185
BlsI	GCNGC	7 cut(s)	222, 745, 1459, 1499, 1548, 1751, 2186
Bme18I	GGWCC	3 cut(s)	1288, 2547, 2636
BmeT110I	CYCGRG	1 cut(s)	1585
BmgBI	CACGTC	1 cut(s)	1408
BmgT120I	GGNCC	8 cut(s)	1288, 1883, 1884, 2074, 2186, 2297, 2547, 2636
BmiI	GGNNCC	4 cut(s)	1283, 1885, 2299, 2637
BpiI	GAAGAC	1 cut(s)	1851
BpmI	CTGGAG	2 cut(s)	2439, 2517
Bpu10I	CCTNAGC	2 cut(s)	236, 278
Bpu14I	TTCGAA	1 cut(s)	428
BpuEI	CTTGAG	2 cut(s)	706, 1184
BpuMI	CCSGG	1 cut(s)	38
Bsa29I	ATCGAT	1 cut(s)	2561
BsaAI	YACGTR	1 cut(s)	2130
BsaBI	GATNNNNATC	2 cut(s)	333, 2385
BsaI	GGTCTC	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	1128
BsaXI	ACNNNNNCTCC	6 cut(s)	393, 423, 1208, 1238, 1708, 1738
Bse118I	RCCGGY	2 cut(s)	109, 388
Bse1I	ACTGG	3 cut(s)	581, 1868, 2374
Bse3DI	GCAATG	2 cut(s)	232, 774
Bse8I	GATNNNNATC	2 cut(s)	333, 2385
BseCI	ATCGAT	1 cut(s)	2561
BseGI	GGATG	8 cut(s)	423, 513, 592, 616, 952, 1568, 1580, 2239
BseJI	GATNNNNATC	2 cut(s)	333, 2385
BseMI	GCAATG	2 cut(s)	232, 774
BseMII	CTCAG	4 cut(s)	110, 269, 486, 2609
BseNI	ACTGG	3 cut(s)	581, 1868, 2374
BseRI	GAGGAG	4 cut(s)	831, 896, 984, 2298
BseSI	GKGCMC	2 cut(s)	1887, 2247
BseXI	GCAGC	4 cut(s)	730, 1444, 1558, 1761
BseYI	CCCAGC	3 cut(s)	198, 2188, 2495
BsgI	GTGCAG	2 cut(s)	322, 2597
Bsh1236I	CGCG	1 cut(s)	1452
BshFI	GGCC	9 cut(s)	372, 388, 776, 1885, 1960, 2075, 2187, 2298, 2623
BshNI	GGYRCC	1 cut(s)	1281
BshVI	ATCGAT	1 cut(s)	2561
BsiHKAI	GWGCWC	4 cut(s)	162, 411, 876, 2247
BsiHKCI	CYCGRG	1 cut(s)	1585
BsiSI	CCGG	4 cut(s)	37, 110, 389, 1129
BslFI	GGGAC	7 cut(s)	435, 1151, 1201, 1540, 1606, 2365, 2478
BsmAI	GTCTC	6 cut(s)	36, 844, 931, 1425, 1894, 2535
BsmBI	CGTCTC	1 cut(s)	1894
BsmFI	GGGAC	7 cut(s)	435, 1151, 1201, 1540, 1606, 2365, 2478
BsmI	GAATGC	3 cut(s)	1325, 2086, 2573
BsnI	GGCC	9 cut(s)	372, 388, 776, 1885, 1960, 2075, 2187, 2298, 2623
Bso31I	GGTCTC	1 cut(s)	36
BsoBI	CYCGRG	1 cut(s)	1585
Bsp119I	TTCGAA	1 cut(s)	428
Bsp120I	GGGCCC	1 cut(s)	1883
Bsp1286I	GDGCHC	6 cut(s)	91, 162, 411, 876, 1887, 2247
Bsp1407I	TGTACA	1 cut(s)	2659
BspANI	GGCC	9 cut(s)	372, 388, 776, 1885, 1960, 2075, 2187, 2298, 2623
BspCNI	CTCAG	4 cut(s)	109, 270, 487, 2610
BspDI	ATCGAT	1 cut(s)	2561
BspFNI	CGCG	1 cut(s)	1452
BspHI	TCATGA	2 cut(s)	1810, 2383
BspLI	GGNNCC	4 cut(s)	1283, 1885, 2299, 2637
BspMAI	CTGCAG	1 cut(s)	1774
BspMI	ACCTGC	2 cut(s)	1103, 2275
BspPI	GGATC	6 cut(s)	336, 1282, 1410, 1859, 2217, 2381
BspQI	GCTCTTC	2 cut(s)	1821, 2274
BspT104I	TTCGAA	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	1281
BspTNI	GGTCTC	1 cut(s)	36
BsrDI	GCAATG	2 cut(s)	232, 774
BsrFI	RCCGGY	2 cut(s)	109, 388
BsrGI	TGTACA	1 cut(s)	2659
BsrI	ACTGG	3 cut(s)	581, 1868, 2374
BssAI	RCCGGY	2 cut(s)	109, 388
BssNAI	GTATAC	1 cut(s)	8
BssSI	CACGAG	1 cut(s)	2031
BssT1I	CCWWGG	3 cut(s)	56, 2329, 2390
Bst1107I	GTATAC	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	2031
Bst4CI	ACNGT	4 cut(s)	1258, 1369, 2268, 2664
Bst6I	CTCTTC	5 cut(s)	242, 882, 1089, 1821, 2274
BstAPI	GCANNNNNTGC	2 cut(s)	309, 752
BstAUI	TGTACA	1 cut(s)	2659
BstBAI	YACGTR	1 cut(s)	2130
BstBI	TTCGAA	1 cut(s)	428
BstC8I	GCNNGC	8 cut(s)	111, 144, 661, 665, 829, 1930, 2194, 2198
BstDEI	CTNAG	8 cut(s)	96, 236, 278, 381, 495, 877, 941, 2618
BstDSI	CCRYGG	1 cut(s)	1398
BstF5I	GGATG	8 cut(s)	423, 513, 592, 616, 952, 1568, 1580, 2239
BstFNI	CGCG	1 cut(s)	1452
BstHHI	GCGC	1 cut(s)	225
BstMAI	GTCTC	6 cut(s)	36, 844, 931, 1425, 1894, 2535
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 309, 752, 773, 1758, 2193
BstSFI	CTRYAG	4 cut(s)	261, 555, 1365, 1770
BstSLI	GKGCMC	2 cut(s)	1887, 2247
BstUI	CGCG	1 cut(s)	1452
BstV1I	GCAGC	4 cut(s)	730, 1444, 1558, 1761
BstV2I	GAAGAC	1 cut(s)	1851
BstX2I	RGATCY	3 cut(s)	1274, 2222, 2501
BstXI	CCANNNNNNTGG	1 cut(s)	2196
BstYI	RGATCY	3 cut(s)	1274, 2222, 2501
BstZ17I	GTATAC	1 cut(s)	8
Bsu15I	ATCGAT	1 cut(s)	2561
BsuRI	GGCC	9 cut(s)	372, 388, 776, 1885, 1960, 2075, 2187, 2298, 2623
BsuTUI	ATCGAT	1 cut(s)	2561
BtgI	CCRYGG	1 cut(s)	1398
BtgZI	GCGATG	1 cut(s)	972
BtrI	CACGTC	1 cut(s)	1408
BtsCI	GGATG	8 cut(s)	423, 513, 592, 616, 952, 1568, 1580, 2239
BtsIMutI	CAGTG	3 cut(s)	1263, 1374, 2264
BveI	ACCTGC	2 cut(s)	1103, 2275
Cac8I	GCNNGC	8 cut(s)	111, 144, 661, 665, 829, 1930, 2194, 2198
CaiI	CAGNNNCTG	1 cut(s)	277
CciI	TCATGA	2 cut(s)	1810, 2383
CfoI	GCGC	1 cut(s)	225
Cfr10I	RCCGGY	2 cut(s)	109, 388
Cfr13I	GGNCC	8 cut(s)	1288, 1883, 1884, 2074, 2186, 2297, 2547, 2636
ClaI	ATCGAT	1 cut(s)	2561
Csp6I	GTAC	9 cut(s)	181, 726, 1282, 1302, 1634, 2064, 2127, 2583, 2660
CspCI	CAANNNNNGTGG	2 cut(s)	903, 938
CviAII	CATG	9 cut(s)	1294, 1542, 1783, 1811, 1851, 1921, 2384, 2516, 2627
CviQI	GTAC	9 cut(s)	181, 726, 1282, 1302, 1634, 2064, 2127, 2583, 2660
DdeI	CTNAG	8 cut(s)	96, 236, 278, 381, 495, 877, 941, 2618
EaeI	YGGCCR	2 cut(s)	370, 774
Eam1104I	CTCTTC	5 cut(s)	242, 882, 1089, 1821, 2274
EarI	CTCTTC	5 cut(s)	242, 882, 1089, 1821, 2274
EciI	GGCGGA	2 cut(s)	480, 2634
Ecl136II	GAGCTC	1 cut(s)	874
Eco130I	CCWWGG	3 cut(s)	56, 2329, 2390
Eco147I	AGGCCT	2 cut(s)	1960, 2623
Eco24I	GRGCYC	3 cut(s)	91, 876, 1887
Eco31I	GGTCTC	1 cut(s)	36
Eco32I	GATATC	1 cut(s)	1650
Eco47I	GGWCC	3 cut(s)	1288, 2547, 2636
Eco53kI	GAGCTC	1 cut(s)	874
Eco57I	CTGAAG	2 cut(s)	861, 1845
Eco88I	CYCGRG	1 cut(s)	1585
EcoICRI	GAGCTC	1 cut(s)	874
EcoO109I	RGGNCCY	1 cut(s)	2636
EcoRI	GAATTC	1 cut(s)	430
EcoRV	GATATC	1 cut(s)	1650
EcoT14I	CCWWGG	3 cut(s)	56, 2329, 2390
EcoT22I	ATGCAT	1 cut(s)	2088
EcoT38I	GRGCYC	3 cut(s)	91, 876, 1887
ErhI	CCWWGG	3 cut(s)	56, 2329, 2390
Esp3I	CGTCTC	1 cut(s)	1894
FaeI	CATG	9 cut(s)	1297, 1545, 1786, 1814, 1854, 1924, 2387, 2519, 2630
FalI	AAGNNNNNCTT	2 cut(s)	860, 892
FaqI	GGGAC	7 cut(s)	435, 1151, 1201, 1540, 1606, 2365, 2478
FatI	CATG	9 cut(s)	1293, 1541, 1782, 1810, 1850, 1920, 2383, 2515, 2626
FauNDI	CATATG	1 cut(s)	2259
FbaI	TGATCA	1 cut(s)	2380
FblI	GTMKAC	2 cut(s)	7, 1606
Fnu4HI	GCNGC	7 cut(s)	221, 744, 1458, 1498, 1547, 1750, 2185
FokI	GGATG	8 cut(s)	430, 520, 599, 623, 959, 1555, 1567, 2246
FriOI	GRGCYC	3 cut(s)	91, 876, 1887
Fsp4HI	GCNGC	7 cut(s)	221, 744, 1458, 1498, 1547, 1750, 2185
FspBI	CTAG	9 cut(s)	570, 858, 1071, 1278, 1389, 1461, 1746, 2099, 2171
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	7 cut(s)	221, 744, 1458, 1498, 1547, 1750, 2185
GsaI	CCCAGC	3 cut(s)	202, 2192, 2499
GsuI	CTGGAG	2 cut(s)	2439, 2517
HaeIII	GGCC	9 cut(s)	372, 388, 776, 1885, 1960, 2075, 2187, 2298, 2623
HapII	CCGG	4 cut(s)	37, 110, 389, 1129
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	9 cut(s)	1297, 1545, 1786, 1814, 1854, 1924, 2387, 2519, 2630
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	3 cut(s)	799, 1658, 2424
HindII	GTYRAC	3 cut(s)	799, 1658, 2424
HpaII	CCGG	4 cut(s)	37, 110, 389, 1129
HphI	GGTGA	3 cut(s)	797, 1701, 2013
Hpy166II	GTNNAC	6 cut(s)	8, 799, 1607, 1658, 2245, 2424
Hpy8I	GTNNAC	6 cut(s)	8, 799, 1607, 1658, 2245, 2424
Hpy99I	CGWCG	1 cut(s)	1170
HpyCH4III	ACNGT	4 cut(s)	1258, 1369, 2268, 2664
HpyCH4IV	ACGT	4 cut(s)	1036, 1165, 1407, 2129
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 309, 752, 773, 1758, 2193
HpyF3I	CTNAG	8 cut(s)	96, 236, 278, 381, 495, 877, 941, 2618
HpySE526I	ACGT	4 cut(s)	1036, 1165, 1407, 2129
Hsp92II	CATG	9 cut(s)	1297, 1545, 1786, 1814, 1854, 1924, 2387, 2519, 2630
HspAI	GCGC	1 cut(s)	223
KpnI	GGTACC	1 cut(s)	1285
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	2380
LguI	GCTCTTC	2 cut(s)	1821, 2274
LmnI	GCTCC	3 cut(s)	165, 414, 871
Lsp1109I	GCAGC	4 cut(s)	730, 1444, 1558, 1761
MaeI	CTAG	9 cut(s)	570, 858, 1071, 1278, 1389, 1461, 1746, 2099, 2171
MaeII	ACGT	4 cut(s)	1036, 1165, 1407, 2129
MfeI	CAATTG	2 cut(s)	538, 2013
MflI	RGATCY	3 cut(s)	1274, 2222, 2501
MhlI	GDGCHC	6 cut(s)	91, 162, 411, 876, 1887, 2247
MlsI	TGGCCA	2 cut(s)	372, 776
MluI	ACGCGT	1 cut(s)	1450
MluNI	TGGCCA	2 cut(s)	372, 776
MlyI	GAGTC	5 cut(s)	310, 1749, 1904, 2027, 2500
MmeI	TCCRAC	5 cut(s)	436, 507, 1080, 2250, 2581
Mox20I	TGGCCA	2 cut(s)	372, 776
Mph1103I	ATGCAT	1 cut(s)	2088
MroNI	GCCGGC	1 cut(s)	109
MscI	TGGCCA	2 cut(s)	372, 776
MseI	TTAA	3 cut(s)	74, 1692, 1970
MslI	CAYNNNNRTG	3 cut(s)	1217, 1397, 2346
Msp20I	TGGCCA	2 cut(s)	372, 776
MspA1I	CMGCKG	2 cut(s)	1332, 2429
MspI	CCGG	4 cut(s)	37, 110, 389, 1129
MunI	CAATTG	2 cut(s)	538, 2013
Mva1269I	GAATGC	3 cut(s)	1325, 2086, 2573
MvnI	CGCG	1 cut(s)	1452
MwoI	GCNNNNNNNGC	6 cut(s)	106, 309, 752, 773, 1758, 2193
NaeI	GCCGGC	1 cut(s)	111
NciI	CCSGG	1 cut(s)	38
NdeI	CATATG	1 cut(s)	2259
NgoMIV	GCCGGC	1 cut(s)	109
NlaIII	CATG	9 cut(s)	1297, 1545, 1786, 1814, 1854, 1924, 2387, 2519, 2630
NlaIV	GGNNCC	4 cut(s)	1283, 1885, 2299, 2637
NmeAIII	GCCGAG	2 cut(s)	185, 2290
NmuCI	GTSAC	9 cut(s)	1124, 1369, 1741, 1936, 2019, 2028, 2262, 2365, 2664
NsiI	ATGCAT	1 cut(s)	2088
NspV	TTCGAA	1 cut(s)	428
OliI	CACNNNNGTG	1 cut(s)	1217
PaeR7I	CTCGAG	1 cut(s)	1585
PagI	TCATGA	2 cut(s)	1810, 2383
PasI	CCCWGGG	1 cut(s)	413
PceI	AGGCCT	2 cut(s)	1960, 2623
PciSI	GCTCTTC	2 cut(s)	1821, 2274
PctI	GAATGC	3 cut(s)	1325, 2086, 2573
PdiI	GCCGGC	1 cut(s)	111
PfeI	GAWTC	6 cut(s)	19, 120, 334, 1237, 1514, 2558
PflMI	CCANNNNNTGG	1 cut(s)	2540
PfoI	TCCNGGA	1 cut(s)	2533
PkrI	GCNGC	7 cut(s)	222, 745, 1459, 1499, 1548, 1751, 2186
PleI	GAGTC	5 cut(s)	310, 1748, 1903, 2026, 2499
PpsI	GAGTC	5 cut(s)	310, 1748, 1903, 2026, 2499
Ppu21I	YACGTR	1 cut(s)	2130
PpuMI	RGGWCCY	1 cut(s)	2636
PshBI	ATTAAT	2 cut(s)	74, 1692
Psp124BI	GAGCTC	1 cut(s)	876
Psp5II	RGGWCCY	1 cut(s)	2636
PspFI	CCCAGC	3 cut(s)	198, 2188, 2495
PspN4I	GGNNCC	4 cut(s)	1283, 1885, 2299, 2637
PspOMI	GGGCCC	1 cut(s)	1883
PspPI	GGNCC	8 cut(s)	1288, 1883, 1884, 2074, 2186, 2297, 2547, 2636
PspPPI	RGGWCCY	1 cut(s)	2636
PspXI	VCTCGAGB	1 cut(s)	1585
PstI	CTGCAG	1 cut(s)	1774
PstNI	CAGNNNCTG	1 cut(s)	277
PsuI	RGATCY	3 cut(s)	1274, 2222, 2501
RsaI	GTAC	9 cut(s)	182, 727, 1283, 1303, 1635, 2065, 2128, 2584, 2661
RsaNI	GTAC	9 cut(s)	181, 726, 1282, 1302, 1634, 2064, 2127, 2583, 2660
RseI	CAYNNNNRTG	3 cut(s)	1217, 1397, 2346
SacI	GAGCTC	1 cut(s)	876
SapI	GCTCTTC	2 cut(s)	1821, 2274
SaqAI	TTAA	3 cut(s)	74, 1692, 1970
SatI	GCNGC	7 cut(s)	221, 744, 1458, 1498, 1547, 1750, 2185
Sau96I	GGNCC	8 cut(s)	1288, 1883, 1884, 2074, 2186, 2297, 2547, 2636
SchI	GAGTC	5 cut(s)	310, 1749, 1904, 2027, 2500
SduI	GDGCHC	6 cut(s)	91, 162, 411, 876, 1887, 2247
SfcI	CTRYAG	4 cut(s)	261, 555, 1365, 1770
Sfr274I	CTCGAG	1 cut(s)	1585
SfuI	TTCGAA	1 cut(s)	428
SinI	GGWCC	3 cut(s)	1288, 2547, 2636
SlaI	CTCGAG	1 cut(s)	1585
SmiMI	CAYNNNNRTG	3 cut(s)	1217, 1397, 2346
SmlI	CTYRAG	3 cut(s)	685, 1199, 1585
SmoI	CTYRAG	3 cut(s)	685, 1199, 1585
SseBI	AGGCCT	2 cut(s)	1960, 2623
SspMI	CTAG	9 cut(s)	570, 858, 1071, 1278, 1389, 1461, 1746, 2099, 2171
SstI	GAGCTC	1 cut(s)	876
StuI	AGGCCT	2 cut(s)	1960, 2623
StyI	CCWWGG	3 cut(s)	56, 2329, 2390
TaaI	ACNGT	4 cut(s)	1258, 1369, 2268, 2664
TaiI	ACGT	4 cut(s)	1039, 1168, 1410, 2132
TaqI	TCGA	5 cut(s)	118, 123, 428, 1586, 2561
TatI	WGTACW	3 cut(s)	725, 1633, 2659
TauI	GCSGC	3 cut(s)	223, 1500, 2187
TfiI	GAWTC	6 cut(s)	19, 120, 334, 1237, 1514, 2558
Tru1I	TTAA	3 cut(s)	74, 1692, 1970
Tru9I	TTAA	3 cut(s)	74, 1692, 1970
TscAI	CASTG	3 cut(s)	1263, 1374, 2271
TseFI	GTSAC	9 cut(s)	1124, 1369, 1741, 1936, 2019, 2028, 2262, 2365, 2664
TseI	GCWGC	4 cut(s)	743, 1457, 1546, 1749
Tsp45I	GTSAC	9 cut(s)	1124, 1369, 1741, 1936, 2019, 2028, 2262, 2365, 2664
TspDTI	ATGAA	6 cut(s)	1176, 1487, 1554, 1827, 2241, 2490
TspGWI	ACGGA	4 cut(s)	309, 1229, 1387, 1561
TspRI	CASTG	3 cut(s)	1263, 1374, 2271
Van91I	CCANNNNNTGG	1 cut(s)	2540
VneI	GTGCAC	1 cut(s)	2243
VpaK11BI	GGWCC	3 cut(s)	1288, 2547, 2636
VspI	ATTAAT	2 cut(s)	74, 1692
XapI	RAATTY	1 cut(s)	430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2541
XhoI	CTCGAG	1 cut(s)	1585
XmiI	GTMKAC	2 cut(s)	7, 1606
XspI	CTAG	9 cut(s)	570, 858, 1071, 1278, 1389, 1461, 1746, 2099, 2171
Zsp2I	ATGCAT	1 cut(s)	2088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.