Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Forward (+)

18362673 .. 18364396

Gene Structure 1724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1098400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCATCCAATAGGGGTCATGGTGGAATTCAGCAGTTGCTGGCTGCAGAGCAAGAAGCTCAGCATATCGTCAATGCTGCCCGAAGTGCTAAAAATGCTAGACTGAAGGAAGCCAAAGATGAGGCCGAGAGGGAGATTGCTGAATACCGTGCCCATGTGGAGGCTGAGTTCCAGAAGAAAGTTCAAGCGAGCAGTGGAGATTCAGGGGCCAATGTGAAGCGTCTTGAATATGAAACTGCAGAAAAGATCAATCACCTCTCGACAGAGGGCTCAAGGATATCGAATGATGTTGTGCAAATGCTTCTGAAGCAGGTGACGACAGTGAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

111

Amino Acids

12.16

Weight (kDa)

6.92

Isoelectric Point (pI)

28.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_G	PF03179	7 - 108	1e-32	Vacuolar (H+)-ATPase G subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	301
Acc36I	ACCTGC	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	2 cut(s)	125, 326
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	185, 227
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
AlwNI	CAGNNNCTG	1 cut(s)	40
AoxI	GGCC	2 cut(s)	123, 207
ApeKI	GCWGC	2 cut(s)	44, 77
ApoI	RAATTY	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	2 cut(s)	245, 325
BaeGI	GKGCMC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	31, 64
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	2 cut(s)	45, 237
BfuAI	ACCTGC	1 cut(s)	301
BisI	GCNGC	2 cut(s)	45, 78
BlpI	GCTNAGC	1 cut(s)	60
BlsI	GCNGC	2 cut(s)	46, 79
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	208
BmsI	GCATC	1 cut(s)	14
Bpu1102I	GCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	74, 156
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	2 cut(s)	31, 64
BshFI	GGCC	2 cut(s)	125, 209
BslI	CCNNNNNNNGG	1 cut(s)	160
BsnI	GGCC	2 cut(s)	125, 209
Bsp1286I	GDGCHC	2 cut(s)	154, 272
Bsp143I	GATC	1 cut(s)	246
Bsp1720I	GCTNAGC	1 cut(s)	60
BspANI	GGCC	2 cut(s)	125, 209
BspCNI	CTCAG	2 cut(s)	73, 157
BspLI	GGNNCC	1 cut(s)	208
BspMAI	CTGCAG	2 cut(s)	49, 241
BspMI	ACCTGC	1 cut(s)	301
BssMI	GATC	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	149, 322
BstC8I	GCNNGC	2 cut(s)	42, 190
BstDEI	CTNAG	2 cut(s)	60, 165
BstF5I	GGATG	1 cut(s)	5
BstKTI	GATC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 95, 307
BstSFI	CTRYAG	2 cut(s)	45, 237
BstSLI	GKGCMC	1 cut(s)	154
BstV1I	GCAGC	2 cut(s)	31, 64
BsuRI	GGCC	2 cut(s)	125, 209
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	2 cut(s)	199, 327
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	42, 190
CaiI	CAGNNNCTG	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	1 cut(s)	209
CviAII	CATG	2 cut(s)	20, 155
CviJI	RGCY	7 cut(s)	44, 59, 113, 125, 164, 209, 270
CviKI_1	RGCY	7 cut(s)	44, 59, 113, 125, 164, 209, 270
DdeI	CTNAG	2 cut(s)	60, 165
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	279
Eco57I	CTGAAG	2 cut(s)	125, 326
EcoRI	GAATTC	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	272
FaeI	CATG	2 cut(s)	23, 158
FaiI	YATR	4 cut(s)	21, 66, 156, 231
FatI	CATG	2 cut(s)	19, 154
Fnu4HI	GCNGC	2 cut(s)	45, 78
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	45, 78
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	2 cut(s)	45, 78
HaeIII	GGCC	2 cut(s)	125, 209
HgaI	GACGC	1 cut(s)	209
Hin1II	CATG	2 cut(s)	23, 158
HinfI	GANTC	1 cut(s)	200
HphI	GGTGA	2 cut(s)	245, 325
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	3 cut(s)	172, 224, 259
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	2 cut(s)	149, 322
HpyCH4V	TGCA	3 cut(s)	47, 239, 295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 95, 307
HpyF3I	CTNAG	2 cut(s)	60, 165
Hsp92II	CATG	2 cut(s)	23, 158
Kzo9I	GATC	1 cut(s)	246
LpnPI	CCDG	4 cut(s)	26, 185, 189, 296
Lsp1109I	GCAGC	2 cut(s)	31, 64
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	154, 272
MluCI	AATT	1 cut(s)	27
MnlI	CCTC	5 cut(s)	115, 123, 154, 259, 266
MwoI	GCNNNNNNNGC	3 cut(s)	86, 95, 307
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	2 cut(s)	23, 158
NlaIV	GGNNCC	1 cut(s)	208
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	313
PaqCI	CACCTGC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	46, 79
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	207
PstI	CTGCAG	2 cut(s)	49, 241
PstNI	CAGNNNCTG	1 cut(s)	40
SatI	GCNGC	2 cut(s)	45, 78
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	154, 272
SetI	ASST	3 cut(s)	61, 258, 315
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	2 cut(s)	45, 237
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	1 cut(s)	27
SspMI	CTAG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	149, 322
TaqI	TCGA	2 cut(s)	260, 281
TasI	AATT	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	200
TscAI	CASTG	2 cut(s)	199, 327
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	44, 77
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	2 cut(s)	199, 327
XapI	RAATTY	1 cut(s)	27
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.