Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Forward (+)

34999991 .. 35006931

Gene Structure 6941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00193480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCATCTGCATCGAACATGGGTCAAGGTGGAATTCAACGGTTGCTTGCTCGGGGCAAGAAGCTCGGCATATCGTCAATGCTGCCGAAATGGTCGAAACAAGCCAAAGAAGAGGCGGAAAGGGAGATCGCCGATTACCGTGCCCAAGTGGAGCTCGAATTCCAGAAGAAAGTTGCGGTGCGCCTTGAAGTGGAAACTGTGGAAAAGATCAATCACCACTTGACAGAGGGCTCAAGGATATCAGGTTCTATGATGTATGACTTCTTTATGGGAAATGGTTGGCATGTGGCATCATATCAAGCTATAATCAACCCCTTCAAGTACTCATCTCCTAATTCTATCCAAGTAGTTTCCAGTAATTCAGCGAAGTTCGGTTCTAGACATGAACTTGTAAAAGATGTTGTAGATTTCCATCCAAGCATAACTGGCTTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

145

Amino Acids

16.21

Weight (kDa)

9.19

Isoelectric Point (pI)

25.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_G	PF03179	33 - 62	6e-06	Vacuolar (H+)-ATPase G subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	116, 176
AcsI	RAATTY	2 cut(s)	33, 158
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	38, 188, 319
AloI	GAACNNNNNNTCC	2 cut(s)	229, 261
AluBI	AGCT	3 cut(s)	64, 154, 302
AluI	AGCT	3 cut(s)	64, 154, 302
Alw21I	GWGCWC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	2 cut(s)	33, 158
AspLEI	GCGC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	51
BaeGI	GKGCMC	1 cut(s)	145
BanII	GRGCYC	2 cut(s)	156, 233
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	1 cut(s)	420
BcgI	CGANNNNNNTGC	5 cut(s)	28, 46, 80, 122, 156
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
BmcAI	AGTACT	1 cut(s)	323
BmeT110I	CYCGRG	1 cut(s)	51
BmsI	GCATC	3 cut(s)	14, 20, 299
BpuEI	CTTGAG	1 cut(s)	217
BsaBI	GATNNNNATC	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	2 cut(s)	354, 430
Bse8I	GATNNNNATC	1 cut(s)	411
BseGI	GGATG	1 cut(s)	412
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseNI	ACTGG	2 cut(s)	354, 430
BseSI	GKGCMC	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	190
BsoBI	CYCGRG	1 cut(s)	51
Bsp1286I	GDGCHC	3 cut(s)	145, 156, 233
Bsp143I	GATC	2 cut(s)	126, 207
BspACI	CCGC	2 cut(s)	116, 176
BsrI	ACTGG	2 cut(s)	354, 430
BssMI	GATC	2 cut(s)	126, 207
Bst4CI	ACNGT	3 cut(s)	42, 140, 199
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	2 cut(s)	129, 210
BstMBI	GATC	2 cut(s)	126, 207
BstMWI	GCNNNNNNNGC	1 cut(s)	426
BstNSI	RCATGY	1 cut(s)	287
BstSLI	GKGCMC	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	48
CfoI	GCGC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	3 cut(s)	19, 284, 383
CviJI	RGCY	6 cut(s)	64, 104, 154, 231, 302, 429
CviKI_1	RGCY	6 cut(s)	64, 104, 154, 231, 302, 429
CviQI	GTAC	1 cut(s)	322
DpnI	GATC	2 cut(s)	128, 209
DpnII	GATC	2 cut(s)	126, 207
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	131
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	2 cut(s)	156, 233
Eco32I	GATATC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	154
Eco88I	CYCGRG	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	154
EcoRI	GAATTC	2 cut(s)	33, 158
EcoRV	GATATC	1 cut(s)	240
EcoT38I	GRGCYC	2 cut(s)	156, 233
FaeI	CATG	3 cut(s)	22, 287, 386
FatI	CATG	3 cut(s)	18, 283, 382
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	1 cut(s)	399
FriOI	GRGCYC	2 cut(s)	156, 233
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	3 cut(s)	22, 287, 386
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HphI	GGTGA	1 cut(s)	206
Hpy188III	TCNNGA	2 cut(s)	163, 378
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	3 cut(s)	42, 140, 199
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	1 cut(s)	426
Hsp92II	CATG	3 cut(s)	22, 287, 386
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	126, 207
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	4 cut(s)	176, 228, 367, 411
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	3 cut(s)	14, 20, 299
MaeI	CTAG	1 cut(s)	378
MalI	GATC	2 cut(s)	128, 209
MboI	GATC	2 cut(s)	126, 207
MboII	GAAGA	2 cut(s)	122, 178
MhlI	GDGCHC	3 cut(s)	145, 156, 233
MluCI	AATT	4 cut(s)	33, 158, 334, 358
MnlI	CCTC	2 cut(s)	106, 220
MseI	TTAA	1 cut(s)	436
MwoI	GCNNNNNNNGC	1 cut(s)	426
NdeII	GATC	2 cut(s)	126, 207
NlaIII	CATG	3 cut(s)	22, 287, 386
NmeAIII	GCCGAG	1 cut(s)	45
NspI	RCATGY	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	84
Psp124BI	GAGCTC	1 cut(s)	156
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	436
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	2 cut(s)	126, 207
ScaI	AGTACT	1 cut(s)	323
SduI	GDGCHC	3 cut(s)	145, 156, 233
SetI	ASST	5 cut(s)	31, 66, 156, 247, 304
SfaNI	GCATC	3 cut(s)	14, 20, 299
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	4 cut(s)	33, 158, 334, 358
SsiI	CCGC	2 cut(s)	116, 176
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	1 cut(s)	156
TaaI	ACNGT	3 cut(s)	42, 140, 199
TaqI	TCGA	3 cut(s)	14, 95, 156
TasI	AATT	4 cut(s)	33, 158, 334, 358
TatI	WGTACW	1 cut(s)	321
Tru1I	TTAA	1 cut(s)	436
Tru9I	TTAA	1 cut(s)	436
TseI	GCWGC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	399
XapI	RAATTY	2 cut(s)	33, 158
XbaI	TCTAGA	1 cut(s)	377
XceI	RCATGY	1 cut(s)	287
XspI	CTAG	1 cut(s)	378
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.