Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Reverse (-)

9852680 .. 9854732

Gene Structure 2053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15780.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCATCAGCATCGAACAGGGGTCAAGGTGGAATTCAACAATTGCTTGCTGCAGAGCAGGAAGCTCAGCATATCGTCAATGCTGCCAGAAATGCAAAACTCGCTAGGCTGAAACAAGCCAAAGACGAGGCAGAAAAGGAGATCGCTGATTACCGTGCCCAAGTGGAGCGTGAATTCCAGAAGAAACTTGCAGCGAGCAGTGGAGATTCTGGGGCCAATGTGAAGCGCCTTGAAGTGGAAACTGCGGAAAAGATCAATCACCTGTCAACAGAGGGCTCAAGGATATCAGGTGATGTTGTCAAGATGCTTCTGAAGCAAGTCACAACAGTGAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

113

Amino Acids

12.17

Weight (kDa)

9.3

Isoelectric Point (pI)

28.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_G	PF03179	9 - 111	8.2e-33	Vacuolar (H+)-ATPase G subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	245
AcsI	RAATTY	2 cut(s)	33, 173
AcuI	CTGAAG	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	2 cut(s)	38, 233
AleI	CACNNNNGTG	1 cut(s)	326
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	3 cut(s)	50, 83, 191
ApoI	RAATTY	2 cut(s)	33, 173
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	251, 302
BaeGI	GKGCMC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	278
BbvI	GCAGC	3 cut(s)	37, 70, 203
BcgI	CGANNNNNNTGC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	229
BisI	GCNGC	3 cut(s)	51, 84, 192
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	3 cut(s)	52, 85, 193
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	214
BmsI	GCATC	3 cut(s)	14, 20, 294
Bpu1102I	GCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	3 cut(s)	37, 70, 203
BshFI	GGCC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	235
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	160, 278
Bsp143I	GATC	2 cut(s)	141, 252
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	214
BspMAI	CTGCAG	1 cut(s)	55
BssMI	GATC	2 cut(s)	141, 252
Bst4CI	ACNGT	2 cut(s)	155, 328
BstC8I	GCNNGC	2 cut(s)	48, 196
BstDEI	CTNAG	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	2 cut(s)	144, 255
BstMBI	GATC	2 cut(s)	141, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 101, 313
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	3 cut(s)	37, 70, 203
BsuRI	GGCC	1 cut(s)	215
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	205, 333
Cac8I	GCNNGC	2 cut(s)	48, 196
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	213
CviJI	RGCY	5 cut(s)	65, 109, 119, 215, 276
CviKI_1	RGCY	5 cut(s)	65, 109, 119, 215, 276
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	2 cut(s)	143, 254
DpnII	GATC	2 cut(s)	141, 252
Eco24I	GRGCYC	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	332
EcoRI	GAATTC	2 cut(s)	33, 173
EcoRV	GATATC	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	278
FaiI	YATR	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	51, 84, 192
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	3 cut(s)	51, 84, 192
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	3 cut(s)	51, 84, 192
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	228
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HinfI	GANTC	1 cut(s)	206
HphI	GGTGA	2 cut(s)	251, 302
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	2 cut(s)	178, 301
Hpy8I	GTNNAC	1 cut(s)	267
HpyCH4III	ACNGT	2 cut(s)	155, 328
HpyCH4V	TGCA	3 cut(s)	53, 95, 191
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 101, 313
HpyF3I	CTNAG	1 cut(s)	66
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	141, 252
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	7 cut(s)	4, 44, 100, 191, 195, 273, 275
Lsp1109I	GCAGC	3 cut(s)	37, 70, 203
LweI	GCATC	3 cut(s)	14, 20, 294
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	2 cut(s)	143, 254
MboI	GATC	2 cut(s)	141, 252
MboII	GAAGA	1 cut(s)	193
MfeI	CAATTG	1 cut(s)	41
MhlI	GDGCHC	2 cut(s)	160, 278
MluCI	AATT	3 cut(s)	33, 41, 173
MnlI	CCTC	2 cut(s)	121, 265
MslI	CAYNNNNRTG	1 cut(s)	326
MunI	CAATTG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	92, 101, 313
NdeII	GATC	2 cut(s)	141, 252
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	319
OliI	CACNNNNGTG	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	52, 85, 193
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	326
SatI	GCNGC	3 cut(s)	51, 84, 192
Sau3AI	GATC	2 cut(s)	141, 252
Sau96I	GGNCC	1 cut(s)	213
SduI	GDGCHC	2 cut(s)	160, 278
SetI	ASST	4 cut(s)	31, 67, 264, 292
SfaNI	GCATC	3 cut(s)	14, 20, 294
SfcI	CTRYAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	3 cut(s)	33, 41, 173
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	155, 328
TaqI	TCGA	1 cut(s)	14
TasI	AATT	3 cut(s)	33, 41, 173
TfiI	GAWTC	1 cut(s)	206
TscAI	CASTG	2 cut(s)	205, 333
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	3 cut(s)	50, 83, 191
Tsp45I	GTSAC	1 cut(s)	319
TspRI	CASTG	2 cut(s)	205, 333
XapI	RAATTY	2 cut(s)	33, 173
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.