Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Reverse (-)

149940 .. 151572

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01390.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAATCCAACAGAGGTCAAGGTTCGATCCAACAGTTGCTTGCTGCTGAGGTAGAAGCTCAACACATTGTCAATGCTGCAAGGACCGCAAAAATGGCAAGACTGAAGCAAGCTAAGGAAGAGGCAGAGAAAGAGATTGCCGAATACAAAGCTCAAACAGAGCAAGACTTCCAGAGGAAACTTGAGGAGACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGATACCAAAATCGAGCAGTTGAAGAACGAAGCATCGAGGATTTCCAAAGATGTTGTCGAAATGCTTCTGAAACATGTGACCACAGTGAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

110

Amino Acids

12.4

Weight (kDa)

5.77

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_G	PF03179	7 - 109	1.5e-33	Vacuolar (H+)-ATPase G subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	87, 195
AclWI	GGATC	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	125
AflIII	ACRYGT	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	3 cut(s)	59, 113, 152
AluI	AGCT	3 cut(s)	59, 113, 152
Alw26I	GTCTC	3 cut(s)	182, 192, 227
AlwI	GGATC	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	44, 77
ArsI	GACNNNNNNTTYG	2 cut(s)	276, 308
Asp700I	GAANNNNTTC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	84
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	31, 64
BcoDI	GTCTC	3 cut(s)	182, 192, 227
BisI	GCNGC	2 cut(s)	45, 78
BlsI	GCNGC	2 cut(s)	46, 79
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	84
BmsI	GCATC	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	245
Bpu10I	CCTNAGC	2 cut(s)	48, 114
BpuEI	CTTGAG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	31, 64
BsmAI	GTCTC	3 cut(s)	182, 192, 227
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	2 cut(s)	87, 195
BspCNI	CTCAG	1 cut(s)	40
BspPI	GGATC	1 cut(s)	22
BssMI	GATC	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	36, 322
Bst6I	CTCTTC	2 cut(s)	114, 212
BstC8I	GCNNGC	2 cut(s)	42, 111
BstDEI	CTNAG	2 cut(s)	48, 114
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	3 cut(s)	182, 192, 227
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 95
BstNSI	RCATGY	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	31, 64
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	2 cut(s)	42, 111
Cfr13I	GGNCC	1 cut(s)	84
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	4 cut(s)	59, 113, 152, 223
CviKI_1	RGCY	4 cut(s)	59, 113, 152, 223
DdeI	CTNAG	2 cut(s)	48, 114
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	114, 212
EarI	CTCTTC	2 cut(s)	114, 212
Eco47I	GGWCC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	125
FaeI	CATG	1 cut(s)	314
FaiI	YATR	1 cut(s)	312
FatI	CATG	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	45, 78
Fsp4HI	GCNGC	2 cut(s)	45, 78
GluI	GCNGC	2 cut(s)	45, 78
GsuI	CTGGAG	1 cut(s)	245
Hin1II	CATG	1 cut(s)	314
HinfI	GANTC	2 cut(s)	5, 200
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	36, 322
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 95
HpyF3I	CTNAG	2 cut(s)	48, 114
Hsp92II	CATG	1 cut(s)	314
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	3 cut(s)	185, 189, 209
Lsp1109I	GCAGC	2 cut(s)	31, 64
LweI	GCATC	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	3 cut(s)	131, 229, 271
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	33, 55
MnlI	CCTC	7 cut(s)	8, 43, 115, 168, 178, 213, 267
MroXI	GAANNNNTTC	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	86, 95
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	314
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	314
PciI	ACATGT	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	46, 79
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PscI	ACATGT	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	84
SatI	GCNGC	2 cut(s)	45, 78
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	84
SchI	GAGTC	1 cut(s)	194
SetI	ASST	6 cut(s)	19, 25, 54, 61, 115, 154
SfaNI	GCATC	1 cut(s)	278
SinI	GGWCC	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SsiI	CCGC	2 cut(s)	87, 195
TaaI	ACNGT	2 cut(s)	36, 322
TaqI	TCGA	4 cut(s)	26, 249, 272, 294
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	44, 77
Tsp45I	GTSAC	1 cut(s)	313
TspRI	CASTG	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	84
XceI	RCATGY	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.