Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Forward (+)

19105122 .. 19107141

Gene Structure 2020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1119300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTGGGAACTTGGTCTGTCACGGTCATCTCCGTTTATACATATCGCATCTGTGTCCCCGCTTTCCTCTGAATCTTTCACTTCCTCTTCTCAAACCGACGCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCACTTTTTCTCACAGATGGCATCCAATAGGGGTCAAGGTGGAATTCAGCAGTTGCTTGCTGCAGAGCAAGAAGCTCAGCACATCGTCAATGCCGCCCGAAGTGCTAAAATGGCTAGACTGAAGCAAGCCAAAGATGAGGCTGAGAGGGAGATTGCTGAATATCGTGCCCATGTGGAGTCAGAGTTCCAGAAGAAAGTTCAAGCGAGCAGTGGAGATTCTGGTGCTAATGTGAAGCGTCTTGAATATGAAACTGCGGAGAAGATCAATCACCTCTCAACAGAGGGCTCTAGGATTTCAAGTGAGGTTGTGCAAATGCTCCTGAAGCAGGTGACGACAGTGAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

159

Amino Acids

17.34

Weight (kDa)

6.52

Isoelectric Point (pI)

59.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_G	PF03179	55 - 156	3.8e-32	Vacuolar (H+)-ATPase G subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	445
Acc36I	ACCTGC	1 cut(s)	445
AciI	CCGC	3 cut(s)	59, 222, 383
AcsI	RAATTY	1 cut(s)	171
AcuI	CTGAAG	2 cut(s)	269, 470
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	3 cut(s)	329, 371, 426
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	389, 469
BaeGI	GKGCMC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	1 cut(s)	139
BfaI	CTAG	2 cut(s)	243, 417
BfmI	CTRYAG	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	445
BisI	GCNGC	2 cut(s)	189, 222
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	2 cut(s)	190, 223
BmsI	GCATC	2 cut(s)	56, 158
Bpu1102I	GCTNAGC	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMII	CTCAG	2 cut(s)	218, 261
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmFI	GGGAC	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	298, 416
Bsp143I	GATC	1 cut(s)	390
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	3 cut(s)	59, 222, 383
BspCNI	CTCAG	2 cut(s)	217, 262
BspMAI	CTGCAG	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	445
BssMI	GATC	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	24, 466
Bst6I	CTCTTC	1 cut(s)	91
BstC8I	GCNNGC	3 cut(s)	186, 255, 334
BstDEI	CTNAG	2 cut(s)	204, 270
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	1 cut(s)	149
BstKTI	GATC	1 cut(s)	393
BstMBI	GATC	1 cut(s)	390
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 239, 451
BstSFI	CTRYAG	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	149
BtsI	GCAGTG	1 cut(s)	343
BtsIMutI	CAGTG	2 cut(s)	343, 471
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	3 cut(s)	186, 255, 334
CseI	GACGC	2 cut(s)	107, 353
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	5 cut(s)	203, 242, 257, 269, 414
CviKI_1	RGCY	5 cut(s)	203, 242, 257, 269, 414
DdeI	CTNAG	2 cut(s)	204, 270
DpnI	GATC	1 cut(s)	392
DpnII	GATC	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	416
Eco57I	CTGAAG	2 cut(s)	269, 470
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	416
FaeI	CATG	1 cut(s)	302
FaiI	YATR	4 cut(s)	38, 42, 300, 375
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	1 cut(s)	298
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	189, 222
FokI	GGATG	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	2 cut(s)	189, 222
FspBI	CTAG	2 cut(s)	243, 417
GluI	GCNGC	2 cut(s)	189, 222
HgaI	GACGC	2 cut(s)	107, 353
Hin1II	CATG	1 cut(s)	302
HinfI	GANTC	3 cut(s)	71, 305, 344
HphI	GGTGA	2 cut(s)	389, 469
Hpy188I	TCNGA	2 cut(s)	70, 310
Hpy188III	TCNNGA	3 cut(s)	316, 368, 448
Hpy99I	CGWCG	1 cut(s)	101
HpyCH4III	ACNGT	2 cut(s)	24, 466
HpyCH4V	TGCA	2 cut(s)	191, 439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 239, 451
HpyF3I	CTNAG	2 cut(s)	204, 270
Hsp92II	CATG	1 cut(s)	302
Kzo9I	GATC	1 cut(s)	390
LmnI	GCTCC	1 cut(s)	450
LpnPI	CCDG	4 cut(s)	329, 333, 440, 461
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	2 cut(s)	56, 158
MaeI	CTAG	2 cut(s)	243, 417
MaeIII	GTNAC	2 cut(s)	18, 457
MalI	GATC	1 cut(s)	392
MboI	GATC	1 cut(s)	390
MboII	GAAGA	3 cut(s)	78, 331, 400
MhlI	GDGCHC	2 cut(s)	298, 416
MluCI	AATT	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	7 cut(s)	76, 94, 259, 267, 403, 410, 424
MwoI	GCNNNNNNNGC	3 cut(s)	230, 239, 451
NdeII	GATC	1 cut(s)	390
NlaIII	CATG	1 cut(s)	302
NmuCI	GTSAC	2 cut(s)	18, 457
PaqCI	CACCTGC	1 cut(s)	445
PfeI	GAWTC	2 cut(s)	71, 344
PkrI	GCNGC	2 cut(s)	190, 223
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	193
SatI	GCNGC	2 cut(s)	189, 222
Sau3AI	GATC	1 cut(s)	390
SchI	GAGTC	1 cut(s)	314
SduI	GDGCHC	2 cut(s)	298, 416
SetI	ASST	5 cut(s)	169, 205, 402, 435, 459
SfaNI	GCATC	2 cut(s)	56, 158
SfcI	CTRYAG	1 cut(s)	189
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	3 cut(s)	59, 222, 383
SspMI	CTAG	2 cut(s)	243, 417
TaaI	ACNGT	2 cut(s)	24, 466
TasI	AATT	1 cut(s)	171
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	2 cut(s)	71, 344
TscAI	CASTG	2 cut(s)	343, 471
TseFI	GTSAC	2 cut(s)	18, 457
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	2 cut(s)	18, 457
TspDTI	ATGAA	1 cut(s)	390
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	2 cut(s)	343, 471
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	1 cut(s)	171
XspI	CTAG	2 cut(s)	243, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.