Rroxscaffold_4G00293170

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002727
Physical Location & Seq
Reverse (-)
13453238 .. 13455290
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293170.1

Sequence Viewer

Length: 399 bp
ATGTTCAATAGTTTCAGGAAACTCCTGACATATTGGGCACAATTATGTGGTAGTACATTTGTGATATCTGGAATGGAAGTCATCAACAAACATGACACGGTTCAGCAGCTACTAACTGTGGAGCAAGAAGTTCAGCAGATTTTGAATGCTTCCAGAAATGCTAAAACGGCTAAACTAAAACAAGCTAAAGAGGAAGCTGAGAAGGAGAATGCTGATTTCCATGCTCAAATGGAAGTTGACTTTCAGAGAAAACATGCAGAGGGAGGTGGACATTCAGGTCCTCTGAAGAGAATTGAGCAAGAGACAGAGGCAAAGATCCATCATTTGAAGATTGATGCTGCAAGAATATCAAATGACATTGTGCGGATGCTTTTGGAATATACAACTGTGACCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
V-ATPase_G

Protein Analysis

132

Amino Acids

15.07

Weight (kDa)

6.59

Isoelectric Point (pI)

26.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
V-ATPase_G PF03179 30 - 129 8.8e-21 Vacuolar (H+)-ATPase G subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 276
AciI CCGC 1 cut(s) 364
AclWI GGATC 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 305
AfaI GTAC 1 cut(s) 55
AgsI TTSAA 3 cut(s) 7, 145, 328
AluBI AGCT 3 cut(s) 109, 185, 197
AluI AGCT 3 cut(s) 109, 185, 197
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 1 cut(s) 310
ApeKI GCWGC 2 cut(s) 106, 338
AspS9I GGNCC 1 cut(s) 278
AvaII GGWCC 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 118, 325
BccI CCATC 1 cut(s) 327
BceAI ACGGC 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 296
BisI GCNGC 2 cut(s) 107, 339
BlsI GCNGC 2 cut(s) 108, 340
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmsI GCATC 2 cut(s) 325, 357
BseGI GGATG 1 cut(s) 372
BseMII CTCAG 1 cut(s) 189
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 2 cut(s) 118, 325
BsmAI GTCTC 1 cut(s) 296
BsmI GAATGC 2 cut(s) 151, 214
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 1 cut(s) 364
BspCNI CTCAG 1 cut(s) 190
BspPI GGATC 1 cut(s) 310
BssMI GATC 1 cut(s) 315
Bst4CI ACNGT 3 cut(s) 100, 118, 388
Bst6I CTCTTC 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 372
BstKTI GATC 1 cut(s) 318
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 257
BstSLI GKGCMC 1 cut(s) 40
BstV1I GCAGC 2 cut(s) 118, 325
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BtsCI GGATG 1 cut(s) 372
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 54
CviAII CATG 3 cut(s) 92, 221, 254
CviJI RGCY 4 cut(s) 109, 170, 185, 197
CviKI_1 RGCY 4 cut(s) 109, 170, 185, 197
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
DrdI GACNNNNNNGTC 1 cut(s) 276
DseDI GACNNNNNNGTC 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco32I GATATC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 278
EcoRV GATATC 1 cut(s) 66
FaeI CATG 3 cut(s) 95, 224, 257
FaiI YATR 6 cut(s) 31, 46, 93, 222, 255, 381
FatI CATG 3 cut(s) 91, 220, 253
Fnu4HI GCNGC 2 cut(s) 107, 339
FokI GGATG 1 cut(s) 379
Fsp4HI GCNGC 2 cut(s) 107, 339
GluI GCNGC 2 cut(s) 107, 339
Hin1II CATG 3 cut(s) 95, 224, 257
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 238, 269
Hpy188I TCNGA 2 cut(s) 246, 285
Hpy188III TCNNGA 4 cut(s) 16, 25, 69, 153
Hpy8I GTNNAC 2 cut(s) 238, 269
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 3 cut(s) 100, 118, 388
HpyCH4V TGCA 2 cut(s) 257, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 3 cut(s) 95, 224, 257
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 4 cut(s) 38, 54, 166, 261
Lsp1109I GCAGC 2 cut(s) 118, 325
LweI GCATC 2 cut(s) 325, 357
MaeIII GTNAC 1 cut(s) 388
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 2 cut(s) 298, 340
MflI RGATCY 1 cut(s) 315
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 41, 291
MnlI CCTC 5 cut(s) 184, 253, 257, 291, 301
MslI CAYNNNNRTG 1 cut(s) 43
Mva1269I GAATGC 2 cut(s) 151, 214
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 1 cut(s) 315
NlaIII CATG 3 cut(s) 95, 224, 257
NmuCI GTSAC 1 cut(s) 388
NspI RCATGY 1 cut(s) 257
PctI GAATGC 2 cut(s) 151, 214
PkrI GCNGC 2 cut(s) 108, 340
PpuMI RGGWCCY 1 cut(s) 278
Psp5II RGGWCCY 1 cut(s) 278
PspPI GGNCC 1 cut(s) 278
PspPPI RGGWCCY 1 cut(s) 278
PsuI RGATCY 1 cut(s) 315
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
RseI CAYNNNNRTG 1 cut(s) 43
SatI GCNGC 2 cut(s) 107, 339
Sau3AI GATC 1 cut(s) 315
Sau96I GGNCC 1 cut(s) 278
SduI GDGCHC 1 cut(s) 40
SetI ASST 5 cut(s) 111, 187, 199, 268, 280
SfaNI GCATC 2 cut(s) 325, 357
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 43
Sse9I AATT 2 cut(s) 41, 291
SsiI CCGC 1 cut(s) 364
TaaI ACNGT 3 cut(s) 100, 118, 388
TasI AATT 2 cut(s) 41, 291
TatI WGTACW 1 cut(s) 53
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 2 cut(s) 106, 338
Tsp45I GTSAC 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 278
XceI RCATGY 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.