Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Forward (+)

12349926 .. 12351624

Gene Structure 1699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G23710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAATCTGCAGGGATCCAGCAACTGCTTGCTGCTGAACGTGAAGCTCAGCAAATTGTCAATGCCGCTAGGACCGCAAAAATGACTAGACTGAAGCAAGCCAAGGAAGAAGCTGAAACAGAGGTTGCTGAGCACAAAACCAGTACAGAGCAGGGGTTCCAGAGGAAACTCGAAGCGACAAGTGGAGATTCAGGTGCAAACGTGAAGAGGCTTGAGCAAGAGACTGATGCCAAAATCGAGCAATTGAAGAACGAAGCTACGAGAATTTCCAAAGATGTTGTGGATATGCTTCTGAAAAATGTGACCACAGTGAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

106

Amino Acids

11.74

Weight (kDa)

5.5

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_G	PF03179	2 - 104	5.9e-31	Vacuolar (H+)-ATPase G subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	66, 75
AclWI	GGATC	2 cut(s)	10, 23
AcsI	RAATTY	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	3 cut(s)	47, 113, 257
AluI	AGCT	3 cut(s)	47, 113, 257
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	2 cut(s)	10, 23
AlwNI	CAGNNNCTG	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	72
BamHI	GGATCC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	2 cut(s)	69, 87
BfmI	CTRYAG	1 cut(s)	9
BisI	GCNGC	2 cut(s)	33, 66
BlpI	GCTNAGC	2 cut(s)	48, 129
BlsI	GCNGC	2 cut(s)	34, 67
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	17, 158
BmsI	GCATC	1 cut(s)	217
Bpu1102I	GCTNAGC	2 cut(s)	48, 129
BpuEI	CTTGAG	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	62, 120
BseNI	ACTGG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	15
Bsp1720I	GCTNAGC	2 cut(s)	48, 129
BspACI	CCGC	2 cut(s)	66, 75
BspCNI	CTCAG	2 cut(s)	61, 121
BspLI	GGNNCC	2 cut(s)	17, 158
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	2 cut(s)	10, 23
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	30, 99
BstDEI	CTNAG	2 cut(s)	48, 129
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	2 cut(s)	30, 99
CaiI	CAGNNNCTG	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	144
CviJI	RGCY	5 cut(s)	47, 101, 113, 211, 257
CviKI_1	RGCY	5 cut(s)	47, 101, 113, 211, 257
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	2 cut(s)	48, 129
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaiI	YATR	1 cut(s)	287
Fnu4HI	GCNGC	2 cut(s)	33, 66
Fsp4HI	GCNGC	2 cut(s)	33, 66
FspBI	CTAG	2 cut(s)	69, 87
GluI	GCNGC	2 cut(s)	33, 66
HinfI	GANTC	2 cut(s)	5, 188
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	2 cut(s)	40, 201
HpyCH4V	TGCA	2 cut(s)	11, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	2 cut(s)	48, 129
HpySE526I	ACGT	2 cut(s)	40, 201
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	5 cut(s)	32, 137, 154, 173, 177
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	2 cut(s)	69, 87
MaeII	ACGT	2 cut(s)	40, 201
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	3 cut(s)	119, 217, 259
MfeI	CAATTG	1 cut(s)	242
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	3 cut(s)	54, 242, 264
MnlI	CCTC	3 cut(s)	115, 156, 201
MunI	CAATTG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	1 cut(s)	15
NlaIV	GGNNCC	2 cut(s)	17, 158
NmuCI	GTSAC	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	5, 188
PkrI	GCNGC	2 cut(s)	34, 67
PspN4I	GGNNCC	2 cut(s)	17, 158
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	15
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SatI	GCNGC	2 cut(s)	33, 66
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	7 cut(s)	43, 49, 115, 126, 196, 204, 259
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	3 cut(s)	54, 242, 264
SsiI	CCGC	2 cut(s)	66, 75
SspMI	CTAG	2 cut(s)	69, 87
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	2 cut(s)	43, 204
TaqI	TCGA	2 cut(s)	171, 237
TasI	AATT	3 cut(s)	54, 242, 264
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	5, 188
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	301
TspRI	CASTG	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	1 cut(s)	264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XspI	CTAG	2 cut(s)	69, 87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.