Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004871.1

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Forward (+)

23575 .. 26659

Gene Structure 3085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004871.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggcatccgcatcgaacagggggcaaggtggaattcaacagttgcttgctgcagagcaagaagctcagcatatcgtcaatgctgctagaaatgctaaactcgctaggctgaaacaagccaaagaagaggcggaaagggagatcgctgattaccgtgcccaaatggagcgtgaattccagaagaaagttgcagcgagcagtggagattctggggctaatgtgaagcgccttgaagtggaaactgcggaaaagatcaatcacctctcgacagagggctcaaggatatcaggtgatgttgtccagatgcttctgaagcatgtgacgacacggcgtgacgccgttttggtggatctgaaatgcttcgggtgcgccatttgggcctcgctggccatcatttcggaaagggtcgggctcgaccgcagcggcagcgacaccgtgagcatactattgaacctagtgaagcttgagttatacgaatcgttttggccattggtcaaagtgggagtgaagtccatgactggggataagatccccggagagaatcggatcttgaacgatgacgacggcgaagaattcgagatgggtagtcctcaacctgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

200

Amino Acids

21.92

Weight (kDa)

5.39

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	9, 131, 245, 418, 423
AclWI	GGATC	3 cut(s)	357, 523, 554
AcoI	YGGCCR	2 cut(s)	387, 485
AcsI	RAATTY	3 cut(s)	33, 173, 572
AcuI	CTGAAG	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	336
AdeI	CACNNNGTG	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	235, 519
AgsI	TTSAA	4 cut(s)	38, 233, 451, 553
AluBI	AGCT	2 cut(s)	65, 463
AluI	AGCT	2 cut(s)	65, 463
AlwI	GGATC	3 cut(s)	357, 523, 554
AoxI	GGCC	3 cut(s)	378, 387, 485
ApeKI	GCWGC	5 cut(s)	50, 83, 191, 420, 426
ApoI	RAATTY	3 cut(s)	33, 173, 572
Asp700I	GAANNNNTTC	1 cut(s)	359
AspLEI	GCGC	2 cut(s)	228, 371
AspS9I	GGNCC	1 cut(s)	378
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	2 cut(s)	251, 302
BaeGI	GKGCMC	1 cut(s)	160
BalI	TGGCCA	2 cut(s)	389, 487
BanII	GRGCYC	2 cut(s)	278, 414
BbvI	GCAGC	5 cut(s)	37, 70, 203, 432, 438
BccI	CCATC	2 cut(s)	398, 574
BceAI	ACGGC	3 cut(s)	323, 344, 580
BcgI	CGANNNNNNTGC	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	534
BfaI	CTAG	3 cut(s)	87, 105, 455
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	229
BglI	GCCNNNNNGGC	2 cut(s)	377, 386
BisI	GCNGC	6 cut(s)	51, 84, 192, 421, 424, 427
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	6 cut(s)	52, 85, 193, 422, 425, 428
Bme1390I	CCNGG	1 cut(s)	534
BmgT120I	GGNCC	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	534
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	3 cut(s)	14, 20, 294
BmuI	ACTGGG	1 cut(s)	528
Bpu1102I	GCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	2 cut(s)	262, 485
BpuMI	CCSGG	1 cut(s)	534
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 519
Bse1I	ACTGG	1 cut(s)	523
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	2 cut(s)	235, 519
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	523
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	5 cut(s)	37, 70, 203, 432, 438
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	3 cut(s)	380, 389, 487
BsiEI	CGRYCG	1 cut(s)	418
BsiSI	CCGG	1 cut(s)	534
BslI	CCNNNNNNNGG	2 cut(s)	235, 519
BsnI	GGCC	3 cut(s)	380, 389, 487
Bsp1286I	GDGCHC	3 cut(s)	160, 278, 414
Bsp143I	GATC	5 cut(s)	141, 252, 349, 528, 546
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	5 cut(s)	9, 131, 245, 418, 423
BspANI	GGCC	3 cut(s)	380, 389, 487
BspCNI	CTCAG	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	55
BspPI	GGATC	3 cut(s)	357, 523, 554
BsrI	ACTGG	1 cut(s)	523
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	5 cut(s)	141, 252, 349, 528, 546
BssNI	GRCGYC	1 cut(s)	336
Bst4CI	ACNGT	3 cut(s)	42, 155, 436
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	336
BstC8I	GCNNGC	3 cut(s)	48, 196, 387
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	5
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	2 cut(s)	228, 371
BstKTI	GATC	5 cut(s)	144, 255, 352, 531, 549
BstMBI	GATC	5 cut(s)	141, 252, 349, 528, 546
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 101, 313, 366, 377, 386, 426
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	532
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	5 cut(s)	37, 70, 203, 432, 438
BstX2I	RGATCY	3 cut(s)	349, 528, 546
BstYI	RGATCY	3 cut(s)	349, 528, 546
BsuRI	GGCC	3 cut(s)	380, 389, 487
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	3 cut(s)	48, 196, 387
CfoI	GCGC	2 cut(s)	228, 371
Cfr13I	GGNCC	1 cut(s)	378
CseI	GACGC	1 cut(s)	344
CviAII	CATG	2 cut(s)	317, 514
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	5 cut(s)	143, 254, 351, 530, 548
DpnII	GATC	5 cut(s)	141, 252, 349, 528, 546
DraIII	CACNNNGTG	1 cut(s)	332
EaeI	YGGCCR	2 cut(s)	387, 485
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	146
Eco24I	GRGCYC	2 cut(s)	278, 414
Eco32I	GATATC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	332
EcoRI	GAATTC	3 cut(s)	33, 173, 572
EcoRV	GATATC	1 cut(s)	285
EcoT38I	GRGCYC	2 cut(s)	278, 414
FaeI	CATG	2 cut(s)	320, 517
FaiI	YATR	5 cut(s)	72, 318, 443, 472, 515
FatI	CATG	2 cut(s)	316, 513
Fnu4HI	GCNGC	6 cut(s)	51, 84, 192, 421, 424, 427
FriOI	GRGCYC	2 cut(s)	278, 414
Fsp4HI	GCNGC	6 cut(s)	51, 84, 192, 421, 424, 427
FspBI	CTAG	3 cut(s)	87, 105, 455
GlaI	GCGC	2 cut(s)	227, 370
GluI	GCNGC	6 cut(s)	51, 84, 192, 421, 424, 427
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	3 cut(s)	380, 389, 487
HapII	CCGG	1 cut(s)	534
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	2 cut(s)	228, 371
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	2 cut(s)	320, 517
Hin6I	GCGC	2 cut(s)	226, 369
HinP1I	GCGC	2 cut(s)	226, 369
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	3 cut(s)	206, 476, 541
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	2 cut(s)	251, 302
Hpy188I	TCNGA	4 cut(s)	312, 354, 400, 546
Hpy188III	TCNNGA	5 cut(s)	178, 265, 301, 550, 577
Hpy99I	CGWCG	1 cut(s)	566
HpyCH4III	ACNGT	3 cut(s)	42, 155, 436
HpyCH4V	TGCA	2 cut(s)	53, 191
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 101, 313, 366, 377, 386, 426
HpyF3I	CTNAG	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	320, 517
HspAI	GCGC	2 cut(s)	226, 369
Kzo9I	GATC	5 cut(s)	141, 252, 349, 528, 546
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	8 cut(s)	4, 191, 195, 273, 314, 371, 504, 547
Lsp1109I	GCAGC	5 cut(s)	37, 70, 203, 432, 438
LweI	GCATC	3 cut(s)	14, 20, 294
MaeI	CTAG	3 cut(s)	87, 105, 455
MaeIII	GTNAC	2 cut(s)	319, 332
MalI	GATC	5 cut(s)	143, 254, 351, 530, 548
MboI	GATC	5 cut(s)	141, 252, 349, 528, 546
MboII	GAAGA	3 cut(s)	137, 193, 581
MflI	RGATCY	3 cut(s)	349, 528, 546
MhlI	GDGCHC	3 cut(s)	160, 278, 414
MlsI	TGGCCA	2 cut(s)	389, 487
MluCI	AATT	3 cut(s)	33, 173, 572
MluNI	TGGCCA	2 cut(s)	389, 487
MnlI	CCTC	5 cut(s)	121, 265, 272, 391, 600
Mox20I	TGGCCA	2 cut(s)	389, 487
MroXI	GAANNNNTTC	1 cut(s)	359
MscI	TGGCCA	2 cut(s)	389, 487
Msp20I	TGGCCA	2 cut(s)	389, 487
MspA1I	CMGCKG	1 cut(s)	423
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	7 cut(s)	92, 101, 313, 366, 377, 386, 426
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	5 cut(s)	141, 252, 349, 528, 546
NlaIII	CATG	2 cut(s)	320, 517
NmuCI	GTSAC	2 cut(s)	319, 332
NspI	RCATGY	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	3 cut(s)	206, 476, 541
PkrI	GCNGC	6 cut(s)	52, 85, 193, 422, 425, 428
PspPI	GGNCC	1 cut(s)	378
PstI	CTGCAG	1 cut(s)	55
PsuI	RGATCY	3 cut(s)	349, 528, 546
SatI	GCNGC	6 cut(s)	51, 84, 192, 421, 424, 427
Sau3AI	GATC	5 cut(s)	141, 252, 349, 528, 546
Sau96I	GGNCC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	534
SduI	GDGCHC	3 cut(s)	160, 278, 414
SetI	ASST	7 cut(s)	31, 67, 264, 292, 456, 465, 598
SfaNI	GCATC	3 cut(s)	14, 20, 294
SfcI	CTRYAG	1 cut(s)	51
SfiI	GGCCNNNNNGGCC	1 cut(s)	386
SmlI	CTYRAG	2 cut(s)	277, 464
SmoI	CTYRAG	2 cut(s)	277, 464
Sse9I	AATT	3 cut(s)	33, 173, 572
SsiI	CCGC	5 cut(s)	9, 131, 245, 418, 423
SspMI	CTAG	3 cut(s)	87, 105, 455
StyD4I	CCNGG	1 cut(s)	532
TaaI	ACNGT	3 cut(s)	42, 155, 436
TaqI	TCGA	4 cut(s)	14, 266, 414, 576
TasI	AATT	3 cut(s)	33, 173, 572
TauI	GCSGC	1 cut(s)	426
TfiI	GAWTC	3 cut(s)	206, 476, 541
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	319, 332
TseI	GCWGC	5 cut(s)	50, 83, 191, 420, 426
Tsp45I	GTSAC	2 cut(s)	319, 332
TspRI	CASTG	1 cut(s)	205
XapI	RAATTY	3 cut(s)	33, 173, 572
XceI	RCATGY	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	3 cut(s)	87, 105, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.