Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Reverse (-)

2784353 .. 2786843

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G038600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCATCCAACAGGGGTCAAGGTGGAATTCAACAATTGCTGACTGCAGAGCAAGAAGCTCAACACATCGTCAATGCTGCCAGAAGCGCAAAAATGGCTAGACTGAAACAAGCCAAAGATGAGGCTGAAAGGGAGATTGCTGAAACCCGTTCCCAAGTGGAGCTTCAGTTCCAGAAGAAAGTTGCAGCGCAGAGCAGTGGAGATTCAGGGGCTAATGTGAAGCGTCTTGAACATGAAACTGAGCACAAGATCAATCACCTCTCTTCCGAGGCCTCAAGGATTTCAAGTGATGTTGTGCAAATGCTTCTGAAGCAGGTGACAACAGTGAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

112

Amino Acids

12.22

Weight (kDa)

9.1

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	304
Acc36I	ACCTGC	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	2 cut(s)	149, 329
AgsI	TTSAA	3 cut(s)	32, 230, 285
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
AluBI	AGCT	2 cut(s)	59, 163
AluI	AGCT	2 cut(s)	59, 163
Alw21I	GWGCWC	1 cut(s)	246
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	2 cut(s)	77, 185
ApoI	RAATTY	1 cut(s)	27
AspLEI	GCGC	2 cut(s)	89, 190
AsuHPI	GGTGA	2 cut(s)	248, 328
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	64, 197
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	304
BisI	GCNGC	2 cut(s)	78, 186
BlsI	GCNGC	2 cut(s)	79, 187
BmsI	GCATC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	267
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	5
BseMII	CTCAG	1 cut(s)	231
BseXI	GCAGC	2 cut(s)	64, 197
BshFI	GGCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	1 cut(s)	232
BspMAI	CTGCAG	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	5
BstHHI	GCGC	2 cut(s)	89, 190
BstKTI	GATC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 95, 310
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	64, 197
BsuRI	GGCC	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	202, 330
BveI	ACCTGC	1 cut(s)	304
CfoI	GCGC	2 cut(s)	89, 190
CseI	GACGC	1 cut(s)	212
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	7 cut(s)	59, 98, 113, 125, 163, 212, 272
CviKI_1	RGCY	7 cut(s)	59, 98, 113, 125, 163, 212, 272
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Eco147I	AGGCCT	1 cut(s)	272
Eco57I	CTGAAG	2 cut(s)	149, 329
EcoRI	GAATTC	1 cut(s)	27
FaeI	CATG	1 cut(s)	236
FaiI	YATR	1 cut(s)	234
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FatI	CATG	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	78, 186
Fsp4HI	GCNGC	2 cut(s)	78, 186
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	2 cut(s)	88, 189
GluI	GCNGC	2 cut(s)	78, 186
HaeIII	GGCC	1 cut(s)	272
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	2 cut(s)	89, 190
Hin1II	CATG	1 cut(s)	236
Hin6I	GCGC	2 cut(s)	87, 188
HinP1I	GCGC	2 cut(s)	87, 188
HinfI	GANTC	1 cut(s)	203
HphI	GGTGA	2 cut(s)	248, 328
Hpy188I	TCNGA	2 cut(s)	268, 309
Hpy188III	TCNNGA	2 cut(s)	172, 227
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	3 cut(s)	47, 185, 298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 95, 310
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	236
HspAI	GCGC	2 cut(s)	87, 188
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	4 cut(s)	94, 185, 192, 299
Lsp1109I	GCAGC	2 cut(s)	64, 197
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	2 cut(s)	187, 255
MfeI	CAATTG	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	27, 35
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	4 cut(s)	115, 262, 269, 283
MseI	TTAA	1 cut(s)	334
MunI	CAATTG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	86, 95, 310
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	316
PaqCI	CACCTGC	1 cut(s)	304
PceI	AGGCCT	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	79, 187
PstI	CTGCAG	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	334
SatI	GCNGC	2 cut(s)	78, 186
Sau3AI	GATC	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	5 cut(s)	25, 61, 165, 261, 318
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	2 cut(s)	27, 35
SseBI	AGGCCT	1 cut(s)	272
SspMI	CTAG	1 cut(s)	99
StuI	AGGCCT	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	325
TasI	AATT	2 cut(s)	27, 35
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	334
Tru9I	TTAA	1 cut(s)	334
TscAI	CASTG	2 cut(s)	202, 330
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	2 cut(s)	77, 185
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	249
TspRI	CASTG	2 cut(s)	202, 330
XapI	RAATTY	1 cut(s)	27
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.