Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004458.1

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Reverse (-)

8569 .. 9348

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004458.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atggaagtcatcaacaaacataacacagttcaacagctactaactgtggagcaagaagttcagcagaatttgaatgcttccagaaatgctaaaacggctagactaaaacaagctaaagaggaagctgagaaggagaatgctgatttccatgctcaaatggaagttgactttcagagaaaacatgcagagggaggtggacattcaggtcctctgaagagaattgagcaagagacagaggcaaagatccatcatttgaagattgatgctgcaagaatatcaaatgacattgtgcggatgcttttggaatatacaactgtgaccaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000166 GO:0000221 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0000331 GO:0001700 GO:0001763 GO:0002009 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006885 GO:0007035 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007424 GO:0007430 GO:0008021 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008286 GO:0008324 GO:0008553 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009790 GO:0009792 GO:0009888 GO:0009894 GO:0009987 GO:0010033 GO:0010243 GO:0010506 GO:0010941 GO:0010942 GO:0012501 GO:0012505 GO:0012506 GO:0015031 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0015682 GO:0015833 GO:0015988 GO:0015991 GO:0016020 GO:0016021 GO:0016241 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0017144 GO:0018130 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019725 GO:0019829 GO:0019899 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030003 GO:0030004 GO:0030133 GO:0030285 GO:0030554 GO:0030641 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031164 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031329 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0032991 GO:0033036 GO:0033176 GO:0033178 GO:0033180 GO:0033181 GO:0033572 GO:0034220 GO:0034641 GO:0034654 GO:0035239 GO:0035295 GO:0035639 GO:0036094 GO:0036295 GO:0036296 GO:0036442 GO:0042221 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0042886 GO:0043067 GO:0043068 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043492 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044456 GO:0044459 GO:0044464 GO:0044769 GO:0045184 GO:0045202 GO:0045851 GO:0046034 GO:0046390 GO:0046483 GO:0046916 GO:0046961 GO:0048518 GO:0048522 GO:0048729 GO:0048731 GO:0048754 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051117 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0051716 GO:0055065 GO:0055067 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0055086 GO:0060429 GO:0060446 GO:0060541 GO:0060562 GO:0061138 GO:0065007 GO:0065008 GO:0070382 GO:0070482 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071453 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072512 GO:0072521 GO:0072522 GO:0090407 GO:0090662 GO:0097159 GO:0097367 GO:0097458 GO:0097708 GO:0098563 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098793 GO:0098796 GO:0098797 GO:0098805 GO:0098852 GO:0099131 GO:0099132 GO:0099501 GO:0099503 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko00561 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map00561 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

108

Amino Acids

12.34

Weight (kDa)

6.29

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	204
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	67
AcuI	CTGAAG	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	32, 73, 256
AluBI	AGCT	3 cut(s)	37, 113, 125
AluI	AGCT	3 cut(s)	37, 113, 125
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	238
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	1 cut(s)	255
BceAI	ACGGC	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	99
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmsI	GCATC	2 cut(s)	253, 285
BseGI	GGATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	224
BsmI	GAATGC	2 cut(s)	79, 142
Bsp143I	GATC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	118
BspPI	GGATC	1 cut(s)	238
BssMI	GATC	1 cut(s)	243
Bst4CI	ACNGT	3 cut(s)	28, 46, 316
Bst6I	CTCTTC	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	300
BstKTI	GATC	1 cut(s)	246
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	206
CviAII	CATG	2 cut(s)	149, 182
CviJI	RGCY	4 cut(s)	37, 98, 113, 125
CviKI_1	RGCY	4 cut(s)	37, 98, 113, 125
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
DrdI	GACNNNNNNGTC	1 cut(s)	204
DseDI	GACNNNNNNGTC	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	206
FaeI	CATG	2 cut(s)	152, 185
FaiI	YATR	4 cut(s)	21, 150, 183, 309
FatI	CATG	2 cut(s)	148, 181
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	152, 185
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	166, 197
Hpy188I	TCNGA	2 cut(s)	174, 213
Hpy188III	TCNNGA	1 cut(s)	81
Hpy8I	GTNNAC	2 cut(s)	166, 197
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	3 cut(s)	28, 46, 316
HpyCH4V	TGCA	2 cut(s)	185, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	152, 185
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	2 cut(s)	94, 189
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	253, 285
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MboII	GAAGA	2 cut(s)	226, 268
MflI	RGATCY	1 cut(s)	243
MluCI	AATT	2 cut(s)	67, 219
MnlI	CCTC	5 cut(s)	112, 181, 185, 219, 229
Mva1269I	GAATGC	2 cut(s)	79, 142
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	1 cut(s)	243
NlaIII	CATG	2 cut(s)	152, 185
NmuCI	GTSAC	1 cut(s)	316
NspI	RCATGY	1 cut(s)	185
PctI	GAATGC	2 cut(s)	79, 142
PkrI	GCNGC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	206
PspPPI	RGGWCCY	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	243
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	243
Sau96I	GGNCC	1 cut(s)	206
SetI	ASST	5 cut(s)	39, 115, 127, 196, 208
SfaNI	GCATC	2 cut(s)	253, 285
SgeI	CNNG	9 cut(s)	65, 93, 111, 122, 161, 194, 216, 239, 282
SinI	GGWCC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	67, 219
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	28, 46, 316
TasI	AATT	2 cut(s)	67, 219
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	67
XceI	RCATGY	1 cut(s)	185
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.