Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Reverse (-)

14148195 .. 14149308

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG166200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTGTATTTTGTTGGGGTTTTGATTATTGATATTGTAATAAACTGTAATGTTTTTTCAGAAACCATGGCATCCGCATCGAACAGGGGGCAAGGTGGAATTCAACAGTTGCTTGCTGCAGAGCAAGAAGCTCAGCATATCGTCAATGCTGCTAGAAATGCTAAACTCGCTAGGCTGAAACAAGCCAAAGAAGAGGCGGAAAGGGAGATCGCTGATTACCGTGCCCAAATGGAGCGTGAATTCCAGAAGAAAGTTGCAGCGAGCAGTGGAGATTCTGGGGCTAATGTGAAGCGCCTTGAAGTGGAAACTGCGGAAAAGATCAATCACCTCTCGACAGAGGGCTCAAGGATATCAGGTGATGTTGTCCAGATGCTTCTGAAGCATGTGACGACAGTGAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

134

Amino Acids

14.74

Weight (kDa)

6.84

Isoelectric Point (pI)

25.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_G	PF03179	31 - 132	1.3e-33	Vacuolar (H+)-ATPase G subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	75, 197, 311
AcsI	RAATTY	2 cut(s)	99, 239
AcuI	CTGAAG	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	104, 299
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
ApeKI	GCWGC	3 cut(s)	116, 149, 257
ApoI	RAATTY	2 cut(s)	99, 239
AspLEI	GCGC	1 cut(s)	294
AsuHPI	GGTGA	2 cut(s)	317, 368
BaeGI	GKGCMC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	344
BbvI	GCAGC	3 cut(s)	103, 136, 269
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BfaI	CTAG	2 cut(s)	153, 171
BfmI	CTRYAG	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	295
BisI	GCNGC	3 cut(s)	117, 150, 258
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	3 cut(s)	118, 151, 259
BmsI	GCATC	3 cut(s)	80, 86, 360
Bpu1102I	GCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	3 cut(s)	103, 136, 269
BslI	CCNNNNNNNGG	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	226, 344
Bsp143I	GATC	2 cut(s)	207, 318
Bsp1720I	GCTNAGC	1 cut(s)	132
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	3 cut(s)	75, 197, 311
BspCNI	CTCAG	1 cut(s)	145
BspMAI	CTGCAG	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	207, 318
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	4 cut(s)	47, 108, 221, 394
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	114, 262
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	71
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	2 cut(s)	210, 321
BstMBI	GATC	2 cut(s)	207, 318
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 167, 379
BstNSI	RCATGY	1 cut(s)	386
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	226
BstV1I	GCAGC	3 cut(s)	103, 136, 269
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	71
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	2 cut(s)	271, 399
Cac8I	GCNNGC	2 cut(s)	114, 262
CfoI	GCGC	1 cut(s)	294
CviAII	CATG	2 cut(s)	67, 383
CviJI	RGCY	5 cut(s)	131, 175, 185, 281, 342
CviKI_1	RGCY	5 cut(s)	131, 175, 185, 281, 342
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	2 cut(s)	209, 320
DpnII	GATC	2 cut(s)	207, 318
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	344
Eco32I	GATATC	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	398
EcoRI	GAATTC	2 cut(s)	99, 239
EcoRV	GATATC	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	2 cut(s)	70, 386
FaiI	YATR	3 cut(s)	68, 138, 384
FatI	CATG	2 cut(s)	66, 382
Fnu4HI	GCNGC	3 cut(s)	117, 150, 258
FokI	GGATG	1 cut(s)	58
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	3 cut(s)	117, 150, 258
FspBI	CTAG	2 cut(s)	153, 171
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	3 cut(s)	117, 150, 258
HaeII	RGCGCY	1 cut(s)	295
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	2 cut(s)	70, 386
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HinfI	GANTC	1 cut(s)	272
HphI	GGTGA	2 cut(s)	317, 368
Hpy188I	TCNGA	2 cut(s)	61, 378
Hpy188III	TCNNGA	3 cut(s)	244, 331, 367
HpyCH4III	ACNGT	4 cut(s)	47, 108, 221, 394
HpyCH4V	TGCA	2 cut(s)	119, 257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 167, 379
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	70, 386
HspAI	GCGC	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	207, 318
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	5 cut(s)	70, 257, 261, 339, 380
Lsp1109I	GCAGC	3 cut(s)	103, 136, 269
LweI	GCATC	3 cut(s)	80, 86, 360
MaeI	CTAG	2 cut(s)	153, 171
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	2 cut(s)	209, 320
MboI	GATC	2 cut(s)	207, 318
MboII	GAAGA	2 cut(s)	203, 259
MhlI	GDGCHC	2 cut(s)	226, 344
MluCI	AATT	3 cut(s)	99, 239, 400
MnlI	CCTC	3 cut(s)	187, 331, 338
MseI	TTAA	1 cut(s)	403
MwoI	GCNNNNNNNGC	3 cut(s)	158, 167, 379
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	2 cut(s)	207, 318
NlaIII	CATG	2 cut(s)	70, 386
NmuCI	GTSAC	1 cut(s)	385
NspI	RCATGY	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	3 cut(s)	118, 151, 259
PstI	CTGCAG	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	403
SatI	GCNGC	3 cut(s)	117, 150, 258
Sau3AI	GATC	2 cut(s)	207, 318
SduI	GDGCHC	2 cut(s)	226, 344
SetI	ASST	4 cut(s)	97, 133, 330, 358
SfaNI	GCATC	3 cut(s)	80, 86, 360
SfcI	CTRYAG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	3 cut(s)	99, 239, 400
SsiI	CCGC	3 cut(s)	75, 197, 311
SspMI	CTAG	2 cut(s)	153, 171
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	4 cut(s)	47, 108, 221, 394
TaqI	TCGA	2 cut(s)	80, 332
TasI	AATT	3 cut(s)	99, 239, 400
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TscAI	CASTG	2 cut(s)	271, 399
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	3 cut(s)	116, 149, 257
Tsp45I	GTSAC	1 cut(s)	385
TspRI	CASTG	2 cut(s)	271, 399
XapI	RAATTY	2 cut(s)	99, 239
XceI	RCATGY	1 cut(s)	386
XspI	CTAG	2 cut(s)	153, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.