Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Reverse (-)

40958260 .. 40960121

Gene Structure 1862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024974

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCATCTGCATCGAACAGGGGTCAAGGTGGAATTCAACAGTTGCTTGCTGCAGAGCAAGAAGCTCAGCATATCGTCAATGCTACCAGAAATGATGGAACACTGAAATCCGGTATCTTGAGTTGTTTTCTAATTGCTTTGGTGTTTGGTTGTCTTCTGCTAACAAAACTCACTAGGCTGAAACAAGCCAAAGAAGAGGCGGAAAGGGAGATCGTTGATTATCGTGCCCAAGTGGAGCCTGAATTCCAAAAGAAAGTTGCAGCGAGCAGTGGAGATTCAGGGGCTAATGTGAAGCGCTTTGAAGTGGAAACTGAGGAAAAGATCAATCACCTCTCGACAGAGGGCTCAAGGATATCAGGTGATGTTGTCCAGATGCTTCTGAAGCATGTGATGACAGCAACATCTGAAACTGGTTCACCTGCGGATGAAACTAGATTTGAGAAGTTAGAAGAGAAAGCCTTCAATTTGAGAAAGGTATTCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

162

Amino Acids

17.72

Weight (kDa)

5.98

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_G	PF03179	56 - 133	1.5e-19	Vacuolar (H+)-ATPase G subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	427
Acc36I	ACCTGC	1 cut(s)	427
AciI	CCGC	2 cut(s)	200, 422
AcsI	RAATTY	2 cut(s)	33, 242
AcuI	CTGAAG	1 cut(s)	401
AfeI	AGCGCT	1 cut(s)	296
AgsI	TTSAA	3 cut(s)	38, 302, 463
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Aor51HI	AGCGCT	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	50, 260
ApoI	RAATTY	2 cut(s)	33, 242
Asp700I	GAANNNNTTC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	297
AsuHPI	GGTGA	3 cut(s)	320, 371, 408
BaeGI	GKGCMC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	37, 272
BccI	CCATC	1 cut(s)	89
BcgI	CGANNNNNNTGC	1 cut(s)	28
BfaI	CTAG	2 cut(s)	174, 432
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	298
BfuAI	ACCTGC	1 cut(s)	427
BisI	GCNGC	2 cut(s)	51, 261
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	2 cut(s)	52, 262
BmiI	GGNNCC	1 cut(s)	237
BmsI	GCATC	3 cut(s)	14, 20, 363
BpiI	GAAGAC	1 cut(s)	146
Bpu1102I	GCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	2 cut(s)	139, 331
BsaWI	WCCGGW	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	415
BseGI	GGATG	1 cut(s)	430
BseMII	CTCAG	2 cut(s)	80, 303
BseNI	ACTGG	1 cut(s)	415
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	37, 272
BsiSI	CCGG	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	229, 347
Bsp143I	GATC	2 cut(s)	210, 321
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	2 cut(s)	200, 422
BspCNI	CTCAG	2 cut(s)	79, 304
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	55
BspMI	ACCTGC	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	415
BssMI	GATC	2 cut(s)	210, 321
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	2 cut(s)	189, 444
BstC8I	GCNNGC	2 cut(s)	48, 265
BstDEI	CTNAG	2 cut(s)	66, 312
BstF5I	GGATG	1 cut(s)	430
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	2 cut(s)	213, 324
BstMBI	GATC	2 cut(s)	210, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNSI	RCATGY	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	37, 272
BstV2I	GAAGAC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	2 cut(s)	101, 274
BveI	ACCTGC	1 cut(s)	427
Cac8I	GCNNGC	2 cut(s)	48, 265
CfoI	GCGC	1 cut(s)	297
CviAII	CATG	1 cut(s)	386
CviJI	RGCY	7 cut(s)	65, 178, 188, 238, 284, 345, 458
CviKI_1	RGCY	7 cut(s)	65, 178, 188, 238, 284, 345, 458
DdeI	CTNAG	2 cut(s)	66, 312
DpnI	GATC	2 cut(s)	212, 323
DpnII	GATC	2 cut(s)	210, 321
Eam1104I	CTCTTC	2 cut(s)	189, 444
EarI	CTCTTC	2 cut(s)	189, 444
EciI	GGCGGA	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	347
Eco32I	GATATC	1 cut(s)	354
Eco47III	AGCGCT	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	401
EcoRI	GAATTC	2 cut(s)	33, 242
EcoRV	GATATC	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	347
FaeI	CATG	1 cut(s)	389
FaiI	YATR	2 cut(s)	72, 387
FatI	CATG	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	51, 261
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	2 cut(s)	51, 261
FspBI	CTAG	2 cut(s)	174, 432
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	2 cut(s)	51, 261
HaeII	RGCGCY	1 cut(s)	298
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	3 cut(s)	320, 371, 408
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	2 cut(s)	381, 406
Hpy188III	TCNNGA	3 cut(s)	118, 334, 370
Hpy8I	GTNNAC	1 cut(s)	416
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	11, 53, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	2 cut(s)	66, 312
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	210, 321
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	9 cut(s)	4, 100, 124, 252, 264, 342, 383, 396, 432
Lsp1109I	GCAGC	2 cut(s)	37, 272
LweI	GCATC	3 cut(s)	14, 20, 363
MaeI	CTAG	2 cut(s)	174, 432
MalI	GATC	2 cut(s)	212, 323
MboI	GATC	2 cut(s)	210, 321
MboII	GAAGA	3 cut(s)	146, 206, 461
MhlI	GDGCHC	2 cut(s)	229, 347
MluCI	AATT	4 cut(s)	33, 132, 242, 463
MnlI	CCTC	4 cut(s)	190, 307, 334, 341
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	1 cut(s)	484
MspI	CCGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	382
NdeII	GATC	2 cut(s)	210, 321
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	1 cut(s)	237
NspI	RCATGY	1 cut(s)	389
PaqCI	CACCTGC	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	52, 262
PspN4I	GGNNCC	1 cut(s)	237
PstI	CTGCAG	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	484
SatI	GCNGC	2 cut(s)	51, 261
Sau3AI	GATC	2 cut(s)	210, 321
SduI	GDGCHC	2 cut(s)	229, 347
SetI	ASST	6 cut(s)	31, 67, 333, 361, 421, 477
SfaNI	GCATC	3 cut(s)	14, 20, 363
SfcI	CTRYAG	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	118, 346
SmoI	CTYRAG	2 cut(s)	118, 346
Sse9I	AATT	4 cut(s)	33, 132, 242, 463
SsiI	CCGC	2 cut(s)	200, 422
SspMI	CTAG	2 cut(s)	174, 432
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	14, 335
TasI	AATT	4 cut(s)	33, 132, 242, 463
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	484
Tru9I	TTAA	1 cut(s)	484
TscAI	CASTG	2 cut(s)	108, 274
TseI	GCWGC	2 cut(s)	50, 260
TspDTI	ATGAA	2 cut(s)	441, 469
TspRI	CASTG	2 cut(s)	108, 274
XapI	RAATTY	2 cut(s)	33, 242
XceI	RCATGY	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	2 cut(s)	174, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.