Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Forward (+)

34932330 .. 34934336

Gene Structure 2007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024345

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCATCCGCATCGAACAGGGGTCAAGGTGGAATTCAACAGTTGCTTGCTGCAGAGCAAGAAGCTCAGCATATCGTCACTGCTGCTAGAAATGCTAAACTCGCTAGGCTGAAACAAGCCAAAGAAGAGGCGGAAAGGGAGATCGCTGATTACCGTGCCCAAATGGAGCGTGAATTCCAGAAGAAAGTTGCAGCGAGCAGTGGAGATTCTGGGGCTAATGTGAAGCGCCTTGAAGTGGAAACTGCGGAAAAGATCAATCACCTCTCGACAGAGGGCTCAAGGATATCAGGTGATGTTGTCCAGATGCTTCTGAAGCATGTGACGACAAACCTTAACAAGAGCGCTAGCAGCAACTGCAAATCTGTGCCTTCAATGGATCTCACAAATGGATGGGATCGTAACTGGGAACTTCCAAGTTCAGTTACAGATCCAAATCCAAAGATGCTGGTGACTCTCATTTTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

156

Amino Acids

16.97

Weight (kDa)

6.85

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_G	PF03179	9 - 109	9.5e-33	Vacuolar (H+)-ATPase G subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	9, 131, 245
AclWI	GGATC	3 cut(s)	384, 402, 422
AcsI	RAATTY	2 cut(s)	33, 173
AcuI	CTGAAG	1 cut(s)	332
AfeI	AGCGCT	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	38, 233, 372
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
AlwI	GGATC	3 cut(s)	384, 402, 422
AlwNI	CAGNNNCTG	1 cut(s)	354
Aor51HI	AGCGCT	1 cut(s)	343
ApeKI	GCWGC	4 cut(s)	50, 83, 191, 348
ApoI	RAATTY	2 cut(s)	33, 173
AspLEI	GCGC	2 cut(s)	228, 344
AsuHPI	GGTGA	3 cut(s)	251, 302, 460
AsuNHI	GCTAGC	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	278
BbvI	GCAGC	4 cut(s)	37, 70, 203, 360
BccI	CCATC	1 cut(s)	384
BcgI	CGANNNNNNTGC	1 cut(s)	28
BfaI	CTAG	3 cut(s)	87, 105, 345
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	2 cut(s)	229, 345
BisI	GCNGC	4 cut(s)	51, 84, 192, 349
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	4 cut(s)	52, 85, 193, 350
BmrI	ACTGGG	1 cut(s)	412
BmsI	GCATC	4 cut(s)	14, 20, 294, 432
BmtI	GCTAGC	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	412
Bpu1102I	GCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	432
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	407
Bse8I	GATNNNNATC	1 cut(s)	432
BseGI	GGATG	2 cut(s)	5, 395
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	407
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	4 cut(s)	37, 70, 203, 360
BslI	CCNNNNNNNGG	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	160, 278
Bsp143I	GATC	5 cut(s)	141, 252, 376, 394, 427
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	3 cut(s)	9, 131, 245
BspCNI	CTCAG	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	55
BspOI	GCTAGC	1 cut(s)	348
BspPI	GGATC	3 cut(s)	384, 402, 422
BsrI	ACTGG	1 cut(s)	407
BssMI	GATC	5 cut(s)	141, 252, 376, 394, 427
Bst4CI	ACNGT	2 cut(s)	42, 155
Bst6I	CTCTTC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	48, 196, 346
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	5, 395
BstH2I	RGCGCY	2 cut(s)	229, 345
BstHHI	GCGC	2 cut(s)	228, 344
BstKTI	GATC	5 cut(s)	144, 255, 379, 397, 430
BstMBI	GATC	5 cut(s)	141, 252, 376, 394, 427
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 101, 313, 348, 354
BstNSI	RCATGY	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	4 cut(s)	37, 70, 203, 360
BstX2I	RGATCY	2 cut(s)	376, 427
BstYI	RGATCY	2 cut(s)	376, 427
BtsCI	GGATG	2 cut(s)	5, 395
BtsI	GCAGTG	2 cut(s)	78, 205
BtsIMutI	CAGTG	2 cut(s)	78, 205
Cac8I	GCNNGC	3 cut(s)	48, 196, 346
CaiI	CAGNNNCTG	1 cut(s)	354
CfoI	GCGC	2 cut(s)	228, 344
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	5 cut(s)	65, 109, 119, 215, 276
CviKI_1	RGCY	5 cut(s)	65, 109, 119, 215, 276
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	5 cut(s)	143, 254, 378, 396, 429
DpnII	GATC	5 cut(s)	141, 252, 376, 394, 427
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	285
Eco47III	AGCGCT	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	332
EcoRI	GAATTC	2 cut(s)	33, 173
EcoRV	GATATC	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	278
FaeI	CATG	1 cut(s)	320
FaiI	YATR	2 cut(s)	72, 318
FatI	CATG	1 cut(s)	316
Fnu4HI	GCNGC	4 cut(s)	51, 84, 192, 349
FokI	GGATG	1 cut(s)	402
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	4 cut(s)	51, 84, 192, 349
FspBI	CTAG	3 cut(s)	87, 105, 345
GlaI	GCGC	2 cut(s)	227, 343
GluI	GCNGC	4 cut(s)	51, 84, 192, 349
HaeII	RGCGCY	2 cut(s)	229, 345
HhaI	GCGC	2 cut(s)	228, 344
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	2 cut(s)	226, 342
HinP1I	GCGC	2 cut(s)	226, 342
HinfI	GANTC	2 cut(s)	206, 451
HphI	GGTGA	3 cut(s)	251, 302, 460
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	3 cut(s)	178, 265, 301
HpyAV	CCTTC	1 cut(s)	378
HpyCH4III	ACNGT	2 cut(s)	42, 155
HpyCH4V	TGCA	3 cut(s)	53, 191, 357
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 101, 313, 348, 354
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	2 cut(s)	226, 342
Kzo9I	GATC	5 cut(s)	141, 252, 376, 394, 427
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	7 cut(s)	4, 191, 195, 273, 314, 388, 431
Lsp1109I	GCAGC	4 cut(s)	37, 70, 203, 360
LweI	GCATC	4 cut(s)	14, 20, 294, 432
MaeI	CTAG	3 cut(s)	87, 105, 345
MaeIII	GTNAC	5 cut(s)	76, 319, 398, 421, 448
MalI	GATC	5 cut(s)	143, 254, 378, 396, 429
MboI	GATC	5 cut(s)	141, 252, 376, 394, 427
MboII	GAAGA	2 cut(s)	137, 193
MflI	RGATCY	2 cut(s)	376, 427
MhlI	GDGCHC	2 cut(s)	160, 278
MluCI	AATT	2 cut(s)	33, 173
MlyI	GAGTC	1 cut(s)	445
MnlI	CCTC	3 cut(s)	121, 265, 272
MseI	TTAA	1 cut(s)	333
MwoI	GCNNNNNNNGC	5 cut(s)	92, 101, 313, 348, 354
NdeII	GATC	5 cut(s)	141, 252, 376, 394, 427
NheI	GCTAGC	1 cut(s)	344
NlaIII	CATG	1 cut(s)	320
NmuCI	GTSAC	3 cut(s)	76, 319, 448
NspI	RCATGY	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	4 cut(s)	52, 85, 193, 350
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	354
PsuI	RGATCY	2 cut(s)	376, 427
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	4 cut(s)	51, 84, 192, 349
Sau3AI	GATC	5 cut(s)	141, 252, 376, 394, 427
SchI	GAGTC	1 cut(s)	445
SduI	GDGCHC	2 cut(s)	160, 278
SetI	ASST	5 cut(s)	31, 67, 264, 292, 333
SfaNI	GCATC	4 cut(s)	14, 20, 294, 432
SfcI	CTRYAG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	2 cut(s)	33, 173
SsiI	CCGC	3 cut(s)	9, 131, 245
SspMI	CTAG	3 cut(s)	87, 105, 345
TaaI	ACNGT	2 cut(s)	42, 155
TaqI	TCGA	2 cut(s)	14, 266
TasI	AATT	2 cut(s)	33, 173
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	2 cut(s)	85, 205
TseFI	GTSAC	3 cut(s)	76, 319, 448
TseI	GCWGC	4 cut(s)	50, 83, 191, 348
Tsp45I	GTSAC	3 cut(s)	76, 319, 448
TspRI	CASTG	2 cut(s)	85, 205
XapI	RAATTY	2 cut(s)	33, 173
XceI	RCATGY	1 cut(s)	320
XspI	CTAG	3 cut(s)	87, 105, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.