Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Forward (+)

34431328 .. 34433231

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00411810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCATCCGCATCGAACAGGGGGCAAGGTGGAATTCAACAGTTGCTTGCTGCAGAGCAAGAAGCTCAGCATATCGTCAATGCTGCTAGAAATGCTAAACTCGCTAGGCTGAAACAAGCCAAAGAAGAGGCAGAAAGGGAGATCGCTGATTACCGTGCCCAAATGGAGCGTGAATTCCAGAAGAAAGTTGCAGCGAGCAGTGGAGATTCTGGGGCTAATGTGAAGCGCCTTGAAGTGGAAACTGCGGAAAAGATCAATCACCTCTCGACAGAGGGCTCAAGGATATCTGGTGATGTTGTCCAGATGCTTCTGAAGCATGTGACGACAGTGAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

112

Amino Acids

12.27

Weight (kDa)

9.1

Isoelectric Point (pI)

29.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_G	PF03179	9 - 110	7e-34	Vacuolar (H+)-ATPase G subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	9, 245
AcsI	RAATTY	2 cut(s)	33, 173
AcuI	CTGAAG	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	2 cut(s)	38, 233
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
ApeKI	GCWGC	3 cut(s)	50, 83, 191
ApoI	RAATTY	2 cut(s)	33, 173
AspLEI	GCGC	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	251, 302
BaeGI	GKGCMC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	278
BbvI	GCAGC	3 cut(s)	37, 70, 203
BcgI	CGANNNNNNTGC	1 cut(s)	28
BfaI	CTAG	2 cut(s)	87, 105
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	229
BisI	GCNGC	3 cut(s)	51, 84, 192
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	3 cut(s)	52, 85, 193
BmsI	GCATC	3 cut(s)	14, 20, 294
Bpu1102I	GCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	3 cut(s)	37, 70, 203
BslI	CCNNNNNNNGG	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	160, 278
Bsp143I	GATC	2 cut(s)	141, 252
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	2 cut(s)	9, 245
BspCNI	CTCAG	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	55
BssMI	GATC	2 cut(s)	141, 252
Bst4CI	ACNGT	3 cut(s)	42, 155, 328
Bst6I	CTCTTC	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	48, 196
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	5
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	2 cut(s)	144, 255
BstMBI	GATC	2 cut(s)	141, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 101, 313
BstNSI	RCATGY	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	3 cut(s)	37, 70, 203
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	205, 333
Cac8I	GCNNGC	2 cut(s)	48, 196
CfoI	GCGC	1 cut(s)	228
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	5 cut(s)	65, 109, 119, 215, 276
CviKI_1	RGCY	5 cut(s)	65, 109, 119, 215, 276
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	2 cut(s)	143, 254
DpnII	GATC	2 cut(s)	141, 252
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	332
EcoRI	GAATTC	2 cut(s)	33, 173
EcoRV	GATATC	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	278
FaeI	CATG	1 cut(s)	320
FaiI	YATR	2 cut(s)	72, 318
FatI	CATG	1 cut(s)	316
Fnu4HI	GCNGC	3 cut(s)	51, 84, 192
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	3 cut(s)	51, 84, 192
FspBI	CTAG	2 cut(s)	87, 105
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	3 cut(s)	51, 84, 192
HaeII	RGCGCY	1 cut(s)	229
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	1 cut(s)	206
HphI	GGTGA	2 cut(s)	251, 302
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	3 cut(s)	178, 265, 301
HpyCH4III	ACNGT	3 cut(s)	42, 155, 328
HpyCH4V	TGCA	2 cut(s)	53, 191
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 101, 313
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	141, 252
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	5 cut(s)	4, 191, 195, 273, 314
Lsp1109I	GCAGC	3 cut(s)	37, 70, 203
LweI	GCATC	3 cut(s)	14, 20, 294
MaeI	CTAG	2 cut(s)	87, 105
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	2 cut(s)	143, 254
MboI	GATC	2 cut(s)	141, 252
MboII	GAAGA	2 cut(s)	137, 193
MhlI	GDGCHC	2 cut(s)	160, 278
MluCI	AATT	3 cut(s)	33, 173, 334
MnlI	CCTC	3 cut(s)	121, 265, 272
MseI	TTAA	1 cut(s)	337
MwoI	GCNNNNNNNGC	3 cut(s)	92, 101, 313
NdeII	GATC	2 cut(s)	141, 252
NlaIII	CATG	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	52, 85, 193
PstI	CTGCAG	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	337
SatI	GCNGC	3 cut(s)	51, 84, 192
Sau3AI	GATC	2 cut(s)	141, 252
SduI	GDGCHC	2 cut(s)	160, 278
SetI	ASST	3 cut(s)	31, 67, 264
SfaNI	GCATC	3 cut(s)	14, 20, 294
SfcI	CTRYAG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	3 cut(s)	33, 173, 334
SsiI	CCGC	2 cut(s)	9, 245
SspMI	CTAG	2 cut(s)	87, 105
TaaI	ACNGT	3 cut(s)	42, 155, 328
TaqI	TCGA	2 cut(s)	14, 266
TasI	AATT	3 cut(s)	33, 173, 334
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	337
Tru9I	TTAA	1 cut(s)	337
TscAI	CASTG	2 cut(s)	205, 333
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	3 cut(s)	50, 83, 191
Tsp45I	GTSAC	1 cut(s)	319
TspRI	CASTG	2 cut(s)	205, 333
XapI	RAATTY	2 cut(s)	33, 173
XceI	RCATGY	1 cut(s)	320
XspI	CTAG	2 cut(s)	87, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.