RchiOBHm_Chr1g0363451

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002727
Physical Location & Seq
Forward (+)
54848012 .. 54848776
765 bp
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UTR
Exon/CDS
Intron
PRQ58820

Sequence Viewer

Length: 324 bp
ATGGAAGTCATCAACAAACATAACACAGTTCAACAGCTACTAACTGTGGAGCAAGAAGTTCAGCAGATTTTGAATGCTTCCAGAAATGCTAAAACGGCTAAACTAAAACAAGCTAAAGAGGAAGCTGAGAAGGAGAATGCTGATTTCCATGCTCAAATGGAAGTTGACTTTCAGAGAAAACATGCAGAGGGAGGTGGACATTCAGGTCCTCTGAAGAGAATTGAGCAAGAGACAGAGGCCTTCCATCATTTGAAGATTGATGCTGCAAGAATATCAAATGACATTGTGCGGATGCTTTTGGAATATACAACTGTGACCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
V-ATPase_G

Protein Analysis

107

Amino Acids

12.22

Weight (kDa)

6.05

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
V-ATPase_G PF03179 6 - 104 1.6e-18 Vacuolar (H+)-ATPase G subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 204
AciI CCGC 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 233
AgsI TTSAA 3 cut(s) 32, 73, 253
AluBI AGCT 3 cut(s) 37, 113, 125
AluI AGCT 3 cut(s) 37, 113, 125
Alw26I GTCTC 1 cut(s) 224
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 206
AvaII GGWCC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 252
BceAI ACGGC 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 224
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmsI GCATC 2 cut(s) 250, 282
BseGI GGATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 250
BshFI GGCC 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 224
BsmI GAATGC 2 cut(s) 79, 142
BsnI GGCC 1 cut(s) 239
BspACI CCGC 1 cut(s) 289
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 118
Bst4CI ACNGT 3 cut(s) 28, 46, 313
Bst6I CTCTTC 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 297
BstMAI GTCTC 1 cut(s) 224
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 250
BsuRI GGCC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 206
CviAII CATG 2 cut(s) 149, 182
CviJI RGCY 5 cut(s) 37, 98, 113, 125, 239
CviKI_1 RGCY 5 cut(s) 37, 98, 113, 125, 239
DdeI CTNAG 1 cut(s) 126
DrdI GACNNNNNNGTC 1 cut(s) 204
DseDI GACNNNNNNGTC 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco147I AGGCCT 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 206
FaeI CATG 2 cut(s) 152, 185
FaiI YATR 4 cut(s) 21, 150, 183, 306
FatI CATG 2 cut(s) 148, 181
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 304
Fsp4HI GCNGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 264
HaeIII GGCC 1 cut(s) 239
Hin1II CATG 2 cut(s) 152, 185
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
Hpy166II GTNNAC 2 cut(s) 166, 197
Hpy188I TCNGA 2 cut(s) 174, 213
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 2 cut(s) 166, 197
HpyAV CCTTC 2 cut(s) 124, 250
HpyCH4III ACNGT 3 cut(s) 28, 46, 313
HpyCH4V TGCA 2 cut(s) 185, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 2 cut(s) 152, 185
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 2 cut(s) 94, 189
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 2 cut(s) 250, 282
MaeIII GTNAC 1 cut(s) 313
MboII GAAGA 2 cut(s) 226, 265
MluCI AATT 1 cut(s) 219
MnlI CCTC 5 cut(s) 112, 181, 185, 219, 229
Mva1269I GAATGC 2 cut(s) 79, 142
MwoI GCNNNNNNNGC 1 cut(s) 95
NlaIII CATG 2 cut(s) 152, 185
NmuCI GTSAC 1 cut(s) 313
NspI RCATGY 1 cut(s) 185
PceI AGGCCT 1 cut(s) 239
PctI GAATGC 2 cut(s) 79, 142
PkrI GCNGC 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 206
PspPI GGNCC 1 cut(s) 206
PspPPI RGGWCCY 1 cut(s) 206
SatI GCNGC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 206
SetI ASST 5 cut(s) 39, 115, 127, 196, 208
SfaNI GCATC 2 cut(s) 250, 282
SgeI CNNG 8 cut(s) 65, 93, 122, 161, 194, 216, 239, 279
SinI GGWCC 1 cut(s) 206
Sse9I AATT 1 cut(s) 219
SseBI AGGCCT 1 cut(s) 239
SsiI CCGC 1 cut(s) 289
StuI AGGCCT 1 cut(s) 239
TaaI ACNGT 3 cut(s) 28, 46, 313
TasI AATT 1 cut(s) 219
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 206
XceI RCATGY 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.