Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Forward (+)

55498097 .. 55499157

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G027980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGAAGTCATCAACAAACATAACACAGTTCAACAGCTACTAACTGTGGAGCAAGAAGTTCAGCAGATTTTGAATGAAGCTGAGAACGAGAATGCTGATTTCCATGCTCAAATGGAAGTTGACTTTCAGAGAAAACATGCAGAGGGAGGTGGACATTCAGGTCCTCTGAAGAGAATTGAGCAAGAGACAGAGGCAAAGATCCATCATTTGAGGATTGATGCTGCAAGAATATCAAATGTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000166 GO:0000221 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0000331 GO:0001700 GO:0001763 GO:0002009 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006885 GO:0007035 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007424 GO:0007430 GO:0008021 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008286 GO:0008324 GO:0008553 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009790 GO:0009792 GO:0009888 GO:0009894 GO:0009987 GO:0010033 GO:0010243 GO:0010506 GO:0010941 GO:0010942 GO:0012501 GO:0012505 GO:0012506 GO:0015031 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0015682 GO:0015833 GO:0015988 GO:0015991 GO:0016020 GO:0016021 GO:0016241 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0017144 GO:0018130 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019725 GO:0019829 GO:0019899 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030003 GO:0030004 GO:0030133 GO:0030285 GO:0030554 GO:0030641 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031164 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031329 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0032991 GO:0033036 GO:0033176 GO:0033178 GO:0033180 GO:0033181 GO:0033572 GO:0034220 GO:0034641 GO:0034654 GO:0035239 GO:0035295 GO:0035639 GO:0036094 GO:0036295 GO:0036296 GO:0036442 GO:0042221 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0042886 GO:0043067 GO:0043068 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043492 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044456 GO:0044459 GO:0044464 GO:0044769 GO:0045184 GO:0045202 GO:0045851 GO:0046034 GO:0046390 GO:0046483 GO:0046916 GO:0046961 GO:0048518 GO:0048522 GO:0048729 GO:0048731 GO:0048754 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051117 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0051716 GO:0055065 GO:0055067 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0055086 GO:0060429 GO:0060446 GO:0060541 GO:0060562 GO:0061138 GO:0065007 GO:0065008 GO:0070382 GO:0070482 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071453 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072512 GO:0072521 GO:0072522 GO:0090407 GO:0090662 GO:0097159 GO:0097367 GO:0097458 GO:0097708 GO:0098563 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098793 GO:0098796 GO:0098797 GO:0098805 GO:0098852 GO:0099131 GO:0099132 GO:0099501 GO:0099503 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko00561 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map00561 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

81

Amino Acids

9.26

Weight (kDa)

5.4

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	159
AclWI	GGATC	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	32, 73
AluBI	AGCT	2 cut(s)	37, 80
AluI	AGCT	2 cut(s)	37, 80
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	179
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmsI	GCATC	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	73
BspPI	GGATC	1 cut(s)	193
BssMI	GATC	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	28, 46
Bst6I	CTCTTC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	161
CviAII	CATG	2 cut(s)	104, 137
CviJI	RGCY	2 cut(s)	37, 80
CviKI_1	RGCY	2 cut(s)	37, 80
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
DrdI	GACNNNNNNGTC	1 cut(s)	159
DseDI	GACNNNNNNGTC	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	161
FaeI	CATG	2 cut(s)	107, 140
FaiI	YATR	3 cut(s)	21, 105, 138
FatI	CATG	2 cut(s)	103, 136
Fnu4HI	GCNGC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	107, 140
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
Hpy166II	GTNNAC	2 cut(s)	121, 152
Hpy188I	TCNGA	2 cut(s)	129, 168
Hpy8I	GTNNAC	2 cut(s)	121, 152
HpyCH4III	ACNGT	2 cut(s)	28, 46
HpyCH4V	TGCA	2 cut(s)	140, 224
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	107, 140
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	1 cut(s)	144
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	208
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	1 cut(s)	181
MflI	RGATCY	1 cut(s)	198
MluCI	AATT	1 cut(s)	174
MnlI	CCTC	5 cut(s)	136, 140, 174, 184, 204
Mva1269I	GAATGC	1 cut(s)	97
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	2 cut(s)	107, 140
NspI	RCATGY	1 cut(s)	140
PctI	GAATGC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	223
PpuMI	RGGWCCY	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	161
PspPPI	RGGWCCY	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	198
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	1 cut(s)	161
SetI	ASST	4 cut(s)	39, 82, 151, 163
SfaNI	GCATC	1 cut(s)	208
SgeI	CNNG	7 cut(s)	65, 100, 116, 149, 171, 194, 237
SinI	GGWCC	1 cut(s)	161
Sse9I	AATT	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	28, 46
TasI	AATT	1 cut(s)	174
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	161
XceI	RCATGY	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.