Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8495233.1

Orthogroup ID

OG0002727

Physical Location & Seq

Genomic Coordinates Reverse (-)

1123 .. 2170

Gene Structure 1048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8495233.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggcatccgcatcgaacagggggcaaggtggaattcaacagttgcttgctgcagagcaagaagctcagcatatcgtcaatgctgctagaaatggtgagttttgttccttatctttggttgtcggtgaggtgctgaaacaagccaaagaagaggcggaaagggagatcgctgattaccgtgcccaaatggagcgtgaattccagaagaaagttgcagcgagcagtggagattctggggctaatgtgaagcgccttgaagtggaaactgcggaaaagatcaatcacctctcgacagagggctcaaggatatcaggtgatgttgtccagatgcttctgaagcatgtgacgacagtgagaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

120

Amino Acids

13.05

Weight (kDa)

5.93

Isoelectric Point (pI)

25.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01390 AT3G01390 AT3G01390 AT3G01390 AT4G23710
fragaria_vesca	FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_6g15780 FvH4_7g19640
malus_domestica	MD04G1098400.v1.1 MD12G1119300.v1.1
prunus_persica	Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.3G038600_v2.0.a1 Prupe.6G237200_v2.0.a1 Prupe.6G237200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363451 RchiOBHm_Chr3g0469521
rosa_laevigata	RLG00000024345 RLG00000024974
rosa_multiflora	Rmu_co8495233.1_g000001 Rmu_sc0004458.1_g000003 Rmu_sc0004871.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293170 Rroxscaffold_6G00411810 Rroxscaffold_7G00193480
rosa_rugosa	Rorug01G0306800 Rorug03G0102300
rosa_samantha	Rh1AG316000 Rh1BG279300 Rh1DG310400 Rh3AG151500 Rh3BG175000 Rh3CG166200 Rh3DG200500
rosa_wichuraiana	Rw1G027980 Rw3G014280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	9, 155, 269
AcsI	RAATTY	2 cut(s)	33, 197
AcuI	CTGAAG	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	38, 257
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
ApeKI	GCWGC	3 cut(s)	50, 83, 215
ApoI	RAATTY	2 cut(s)	33, 197
AspLEI	GCGC	1 cut(s)	252
AsuHPI	GGTGA	4 cut(s)	107, 137, 275, 326
BaeGI	GKGCMC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	302
BbvI	GCAGC	3 cut(s)	37, 70, 227
BcgI	CGANNNNNNTGC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	253
BisI	GCNGC	3 cut(s)	51, 84, 216
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	3 cut(s)	52, 85, 217
BmsI	GCATC	3 cut(s)	14, 20, 318
Bpu1102I	GCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	3 cut(s)	37, 70, 227
BslI	CCNNNNNNNGG	1 cut(s)	259
Bsp1286I	GDGCHC	2 cut(s)	184, 302
Bsp143I	GATC	2 cut(s)	165, 276
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	3 cut(s)	9, 155, 269
BspCNI	CTCAG	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	55
BssMI	GATC	2 cut(s)	165, 276
Bst4CI	ACNGT	3 cut(s)	42, 179, 352
Bst6I	CTCTTC	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	48, 220
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	5
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	2 cut(s)	168, 279
BstMBI	GATC	2 cut(s)	165, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstNSI	RCATGY	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	184
BstV1I	GCAGC	3 cut(s)	37, 70, 227
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	229, 357
Cac8I	GCNNGC	2 cut(s)	48, 220
CfoI	GCGC	1 cut(s)	252
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	4 cut(s)	65, 143, 239, 300
CviKI_1	RGCY	4 cut(s)	65, 143, 239, 300
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	2 cut(s)	167, 278
DpnII	GATC	2 cut(s)	165, 276
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	302
Eco32I	GATATC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	356
EcoRI	GAATTC	2 cut(s)	33, 197
EcoRV	GATATC	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	302
FaeI	CATG	1 cut(s)	344
FaiI	YATR	2 cut(s)	72, 342
FatI	CATG	1 cut(s)	340
Fnu4HI	GCNGC	3 cut(s)	51, 84, 216
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	51, 84, 216
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	3 cut(s)	51, 84, 216
HaeII	RGCGCY	1 cut(s)	253
HhaI	GCGC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HinfI	GANTC	1 cut(s)	230
HphI	GGTGA	4 cut(s)	107, 137, 275, 326
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	3 cut(s)	202, 289, 325
HpyCH4III	ACNGT	3 cut(s)	42, 179, 352
HpyCH4V	TGCA	2 cut(s)	53, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	165, 276
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	5 cut(s)	4, 215, 219, 297, 338
Lsp1109I	GCAGC	3 cut(s)	37, 70, 227
LweI	GCATC	3 cut(s)	14, 20, 318
MaeI	CTAG	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	2 cut(s)	167, 278
MboI	GATC	2 cut(s)	165, 276
MboII	GAAGA	2 cut(s)	161, 217
MhlI	GDGCHC	2 cut(s)	184, 302
MluCI	AATT	3 cut(s)	33, 197, 358
MnlI	CCTC	4 cut(s)	121, 145, 289, 296
MseI	TTAA	1 cut(s)	361
MwoI	GCNNNNNNNGC	1 cut(s)	337
NdeII	GATC	2 cut(s)	165, 276
NlaIII	CATG	1 cut(s)	344
NmuCI	GTSAC	1 cut(s)	343
NspI	RCATGY	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	52, 85, 217
PstI	CTGCAG	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	361
SatI	GCNGC	3 cut(s)	51, 84, 216
Sau3AI	GATC	2 cut(s)	165, 276
SduI	GDGCHC	2 cut(s)	184, 302
SetI	ASST	5 cut(s)	31, 67, 132, 288, 316
SfaNI	GCATC	3 cut(s)	14, 20, 318
SfcI	CTRYAG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	3 cut(s)	33, 197, 358
SsiI	CCGC	3 cut(s)	9, 155, 269
SspMI	CTAG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	42, 179, 352
TaqI	TCGA	2 cut(s)	14, 290
TasI	AATT	3 cut(s)	33, 197, 358
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	361
Tru9I	TTAA	1 cut(s)	361
TscAI	CASTG	2 cut(s)	229, 357
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	3 cut(s)	50, 83, 215
Tsp45I	GTSAC	1 cut(s)	343
TspRI	CASTG	2 cut(s)	229, 357
XapI	RAATTY	2 cut(s)	33, 197
XceI	RCATGY	1 cut(s)	344
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.