Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0012636

Physical Location & Seq

Genomic Coordinates Reverse (-)

13518879 .. 13520120

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG151600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCAGCCGAGCTCTCCAAGATATGTTTCTGCATCACTACACTGCTCTTTGTTACAATGGCCTCATCGGCAAATGACACAATGCCTGCAGATAATGAGATTCCATTCGCTGCTTCATCTCCATCTCCATCTCCTTATCCCGAGCTTCCTGAAAGCGGAGGAGATTCTTCGCTCTCTTCAGATGCATCGGAATATTCTCCACCACCACCGCCGCCTTATACTGATGCTTTAGCAGCTGAAATAGAGGCAGAGCAGCTTAATCTCTCTCCAGACTACTCTCCTTCCCCTGCTCCTTACTTCACACAATACCCTTCTCCTCCTCCTTACATTGAAGTTGAGGCTCCTGAAGTCTATGAGCTTTACACTCCAACTCAAGCTCCAGCACCGGAACCATCTTCTGTGTTCGGATCCGATCAATTATCCGATACTGAGCCTGGTTCTCCTGTCTCTGACATGGCTCCTAATCCTACTGTATTGTCGTCCAACTACAGAGCAGAAGACGAGACTGTTGAATTTGACGATGAGTATTATAGTTCGGAGCAAAGTAAAAACAGGGTAACAATGGTTGGTTTTGTGCTTGGTGCTGTTTGCTTGGTTGGATTGGCGGGTATTGTGTTCAATAAGAAGAAATATAGCAAGTCCAAAGCAGAGTACGATTACGAATTGGCTAAGAGAGAAGATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

24.62

Weight (kDa)

4.05

Isoelectric Point (pI)

74.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15790 FvH4_6g15810
prunus_persica	Prupe.6G237100_v2.0.a1
pyrus_communis	pycom04g09370 pycom12g11790
rosa_laevigata	RLG00000024343 RLG00000024344
rosa_multiflora	Rmu_sc0004871.1_g000009
rosa_roxburghii	Rroxscaffold_6G00411800
rosa_rugosa	Rorug03G0102300
rosa_samantha	Rh3AG151600 Rh3AG151700 Rh3BG175100 Rh3BG175200 Rh3CG166300 Rh3CG166500 Rh3DG200300 Rh3DG200400
rosa_wichuraiana	Rw3G014290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	156, 209, 212, 605
AclWI	GGATC	2 cut(s)	402, 415
AcsI	RAATTY	1 cut(s)	512
AcuI	CTGAAG	2 cut(s)	162, 366
AfaI	GTAC	1 cut(s)	653
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	332, 512, 619
AjnI	CCWGG	1 cut(s)	433
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	6 cut(s)	13, 145, 236, 256, 358, 377
AluI	AGCT	6 cut(s)	13, 145, 236, 256, 358, 377
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	451, 497
AlwI	GGATC	2 cut(s)	402, 415
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	4 cut(s)	5, 110, 233, 253
ApoI	RAATTY	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	140
BamHI	GGATCC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	4 cut(s)	17, 97, 245, 265
BccI	CCATC	3 cut(s)	130, 136, 400
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	451, 497
BfmI	CTRYAG	2 cut(s)	87, 487
BglI	GCCNNNNNGGC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	5 cut(s)	6, 111, 212, 234, 254
BlsI	GCNGC	5 cut(s)	7, 112, 213, 235, 255
Bme1390I	CCNGG	1 cut(s)	435
BmeT110I	CYCGRG	1 cut(s)	140
BmiI	GGNNCC	4 cut(s)	342, 390, 409, 459
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	4 cut(s)	42, 172, 194, 214
BpiI	GAAGAC	1 cut(s)	504
BplI	GAGNNNNNCTC	1 cut(s)	666
BpmI	CTGGAG	2 cut(s)	252, 363
BpuEI	CTTGAG	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	385
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	420
BseRI	GAGGAG	3 cut(s)	174, 306, 309
BseXI	GCAGC	4 cut(s)	17, 97, 245, 265
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	2 cut(s)	451, 497
BsnI	GGCC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	3 cut(s)	407, 412, 679
BspACI	CCGC	4 cut(s)	156, 209, 212, 605
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	4 cut(s)	342, 390, 409, 459
BspMAI	CTGCAG	1 cut(s)	91
BspPI	GGATC	2 cut(s)	402, 415
BssMI	GATC	3 cut(s)	407, 412, 679
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	472, 508
Bst6I	CTCTTC	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	429, 669
BstKTI	GATC	3 cut(s)	410, 415, 682
BstMAI	GTCTC	2 cut(s)	451, 497
BstMBI	GATC	3 cut(s)	407, 412, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 233
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	2 cut(s)	87, 487
BstV1I	GCAGC	4 cut(s)	17, 97, 245, 265
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	2 cut(s)	407, 679
BstYI	RGATCY	2 cut(s)	407, 679
BsuRI	GGCC	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	652
CviAII	CATG	1 cut(s)	454
CviQI	GTAC	1 cut(s)	652
DdeI	CTNAG	2 cut(s)	429, 669
DpnI	GATC	3 cut(s)	409, 414, 681
DpnII	GATC	3 cut(s)	407, 412, 679
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	2 cut(s)	162, 366
Eco88I	CYCGRG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	1 cut(s)	457
FaiI	YATR	6 cut(s)	25, 219, 354, 455, 531, 633
FatI	CATG	1 cut(s)	453
FauI	CCCGC	1 cut(s)	598
Fnu4HI	GCNGC	5 cut(s)	6, 111, 212, 234, 254
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	5 cut(s)	6, 111, 212, 234, 254
GluI	GCNGC	5 cut(s)	6, 111, 212, 234, 254
GsuI	CTGGAG	2 cut(s)	252, 363
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	1 cut(s)	386
Hin1II	CATG	1 cut(s)	457
HinfI	GANTC	2 cut(s)	100, 164
HpaII	CCGG	1 cut(s)	386
Hpy188I	TCNGA	8 cut(s)	181, 190, 407, 412, 424, 451, 538, 686
Hpy188III	TCNNGA	4 cut(s)	140, 149, 269, 344
HpyAV	CCTTC	2 cut(s)	291, 321
HpyCH4III	ACNGT	2 cut(s)	472, 508
HpyCH4V	TGCA	3 cut(s)	33, 89, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 233
HpyF3I	CTNAG	2 cut(s)	429, 669
Hsp92II	CATG	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	407, 412, 679
LmnI	GCTCC	5 cut(s)	295, 346, 382, 463, 538
Lsp1109I	GCAGC	4 cut(s)	17, 97, 245, 265
LweI	GCATC	4 cut(s)	42, 172, 194, 214
MaeIII	GTNAC	2 cut(s)	52, 556
MalI	GATC	3 cut(s)	409, 414, 681
MboI	GATC	3 cut(s)	407, 412, 679
MboII	GAAGA	5 cut(s)	159, 168, 387, 509, 637
MflI	RGATCY	2 cut(s)	407, 679
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	3 cut(s)	416, 512, 662
MmeI	TCCRAC	3 cut(s)	392, 507, 577
MnlI	CCTC	6 cut(s)	73, 152, 238, 327, 330, 331
Mph1103I	ATGCAT	1 cut(s)	187
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	68, 233
NdeII	GATC	3 cut(s)	407, 412, 679
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	4 cut(s)	342, 390, 409, 459
NmeAIII	GCCGAG	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	100, 164
PkrI	GCNGC	5 cut(s)	7, 112, 213, 235, 255
Psp124BI	GAGCTC	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	4 cut(s)	342, 390, 409, 459
PstI	CTGCAG	1 cut(s)	91
PsuI	RGATCY	2 cut(s)	407, 679
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	5 cut(s)	6, 111, 212, 234, 254
Sau3AI	GATC	3 cut(s)	407, 412, 679
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	6 cut(s)	15, 147, 238, 258, 360, 379
SfaNI	GCATC	4 cut(s)	42, 172, 194, 214
SfcI	CTRYAG	2 cut(s)	87, 487
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	3 cut(s)	416, 512, 662
SsiI	CCGC	4 cut(s)	156, 209, 212, 605
SspI	AATATT	1 cut(s)	194
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	2 cut(s)	472, 508
TasI	AATT	3 cut(s)	416, 512, 662
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	2 cut(s)	100, 164
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	4 cut(s)	5, 110, 233, 253
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	48
XapI	RAATTY	1 cut(s)	512
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.