Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0012636

Physical Location & Seq

Genomic Coordinates Forward (+)

34929524 .. 34930201

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024344

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCAACCGAGCTCTCCAAGATATGTCTCTGCATCATTACACTGCTCTTTGTTACAATGGCCTCATCGGCAAATGACACAATGCCTGCAGATAATGAGATTCTATTCGCTGCTTCATCTCCATCTCCTTATCCCGAGCTTCCTGAAAGCGGAGGAGATTCTTCGCTCTCTTCAGATGCATCGGAATATACTCCACCACCACCGCCTTATATTGATGCTTTAGCAGCTGAAACAGAGGCAGAGCAGCTTAATCTCTCTCCAGACTACTCTCCTTCCCCTGCTCCTTACTTCACACAATACCCTTCTCCTCCTCCTTACATTGAAGTTGAGGCTCCTGAATTCTATGAGCTTTACACTCCAACTCCAGCTCCAGCACCTGAACCATCTTCTGTGTTCGGATCCGATCAATTATCCGATACTGAGCCTGGTTTTCCTGACTCTGACATAGCTCCTAATCCTACTGTATTGTCGTCCAACTACAGAGCAGAAGACGAGAATGTTGAATTTGACGATGAGTATTATAGTTCGGAGCAGGGTAAAAACAGGGTAACAATGGTTGGTTTTGTGCTTGGTGCTGTTTGCTTGGTTGGATTGGCGGGTATTGTGTTCAATAAGAAGAAATATATGAAGTCCAAAGCAGAGTACGATTACGAATTGGCTAAGAGAGAAGATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

24.48

Weight (kDa)

4.05

Isoelectric Point (pI)

70.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15790 FvH4_6g15810
prunus_persica	Prupe.6G237100_v2.0.a1
pyrus_communis	pycom04g09370 pycom12g11790
rosa_laevigata	RLG00000024343 RLG00000024344
rosa_multiflora	Rmu_sc0004871.1_g000009
rosa_roxburghii	Rroxscaffold_6G00411800
rosa_rugosa	Rorug03G0102300
rosa_samantha	Rh3AG151600 Rh3AG151700 Rh3BG175100 Rh3BG175200 Rh3CG166300 Rh3CG166500 Rh3DG200300 Rh3DG200400
rosa_wichuraiana	Rw3G014290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	150, 203, 596
AclWI	GGATC	2 cut(s)	393, 406
AcsI	RAATTY	2 cut(s)	338, 503
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	323, 503, 610
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	7 cut(s)	13, 139, 227, 247, 349, 368, 449
AluI	AGCT	7 cut(s)	13, 139, 227, 247, 349, 368, 449
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	2 cut(s)	393, 406
AlwNI	CAGNNNCTG	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	3 cut(s)	110, 224, 244
ApoI	RAATTY	2 cut(s)	338, 503
AvaI	CYCGRG	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	3 cut(s)	97, 236, 256
BccI	CCATC	2 cut(s)	130, 391
BciT130I	CCWGG	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	32
BfmI	CTRYAG	2 cut(s)	87, 478
BglI	GCCNNNNNGGC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	670
BisI	GCNGC	3 cut(s)	111, 225, 245
BlsI	GCNGC	3 cut(s)	112, 226, 246
Bme1390I	CCNGG	1 cut(s)	426
BmeT110I	CYCGRG	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	333, 400
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	4 cut(s)	42, 166, 188, 205
BpiI	GAAGAC	1 cut(s)	495
BplI	GAGNNNNNCTC	1 cut(s)	657
BpmI	CTGGAG	3 cut(s)	243, 348, 354
BsaXI	ACNNNNNCTCC	4 cut(s)	346, 352, 376, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	3 cut(s)	168, 297, 300
BseXI	GCAGC	3 cut(s)	97, 236, 256
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	3 cut(s)	398, 403, 670
BspACI	CCGC	3 cut(s)	150, 203, 596
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	333, 400
BspMAI	CTGCAG	1 cut(s)	91
BspPI	GGATC	2 cut(s)	393, 406
BssMI	GATC	3 cut(s)	398, 403, 670
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	420, 660
BstKTI	GATC	3 cut(s)	401, 406, 673
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	398, 403, 670
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 224
BstNI	CCWGG	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	424
BstSFI	CTRYAG	2 cut(s)	87, 478
BstV1I	GCAGC	3 cut(s)	97, 236, 256
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	2 cut(s)	398, 670
BstYI	RGATCY	2 cut(s)	398, 670
BsuRI	GGCC	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	87
CaiI	CAGNNNCTG	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	643
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	2 cut(s)	420, 660
DpnI	GATC	3 cut(s)	400, 405, 672
DpnII	GATC	3 cut(s)	398, 403, 670
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	424
EcoT22I	ATGCAT	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	15
FaiI	YATR	8 cut(s)	25, 189, 210, 345, 446, 522, 624, 626
FauI	CCCGC	1 cut(s)	589
Fnu4HI	GCNGC	3 cut(s)	111, 225, 245
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	3 cut(s)	111, 225, 245
GluI	GCNGC	3 cut(s)	111, 225, 245
GsuI	CTGGAG	3 cut(s)	243, 348, 354
HaeIII	GGCC	1 cut(s)	62
HinfI	GANTC	3 cut(s)	100, 158, 437
Hpy188I	TCNGA	7 cut(s)	175, 184, 398, 403, 415, 442, 529
Hpy188III	TCNNGA	5 cut(s)	134, 143, 260, 335, 434
HpyAV	CCTTC	2 cut(s)	282, 312
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4V	TGCA	3 cut(s)	33, 89, 179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 224
HpyF3I	CTNAG	2 cut(s)	420, 660
Kzo9I	GATC	3 cut(s)	398, 403, 670
LmnI	GCTCC	5 cut(s)	286, 337, 373, 454, 529
Lsp1109I	GCAGC	3 cut(s)	97, 236, 256
LweI	GCATC	4 cut(s)	42, 166, 188, 205
MaeIII	GTNAC	2 cut(s)	52, 547
MalI	GATC	3 cut(s)	400, 405, 672
MboI	GATC	3 cut(s)	398, 403, 670
MboII	GAAGA	5 cut(s)	153, 162, 378, 500, 628
MflI	RGATCY	2 cut(s)	398, 670
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	4 cut(s)	338, 407, 503, 653
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	3 cut(s)	383, 498, 568
MnlI	CCTC	6 cut(s)	73, 146, 229, 318, 321, 322
Mph1103I	ATGCAT	1 cut(s)	181
MseI	TTAA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	2 cut(s)	68, 224
NdeII	GATC	3 cut(s)	398, 403, 670
NlaIV	GGNNCC	2 cut(s)	333, 400
NsiI	ATGCAT	1 cut(s)	181
PfeI	GAWTC	2 cut(s)	100, 158
PkrI	GCNGC	3 cut(s)	112, 226, 246
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
Psp124BI	GAGCTC	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	333, 400
PstI	CTGCAG	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	2 cut(s)	398, 670
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	3 cut(s)	111, 225, 245
Sau3AI	GATC	3 cut(s)	398, 403, 670
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	8 cut(s)	15, 141, 229, 249, 351, 370, 379, 451
SfaNI	GCATC	4 cut(s)	42, 166, 188, 205
SfcI	CTRYAG	2 cut(s)	87, 478
Sse9I	AATT	4 cut(s)	338, 407, 503, 653
SsiI	CCGC	3 cut(s)	150, 203, 596
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	463
TasI	AATT	4 cut(s)	338, 407, 503, 653
TfiI	GAWTC	2 cut(s)	100, 158
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	3 cut(s)	110, 224, 244
TspDTI	ATGAA	2 cut(s)	105, 641
TspRI	CASTG	1 cut(s)	48
XapI	RAATTY	2 cut(s)	338, 503
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.