Rmu_sc0004871.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004871.1
OG0012636
Physical Location & Seq
Forward (+)
20601 .. 21287
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004871.1_g000009.1.cds

Sequence Viewer

Length: 687 bp
atggcagccgagctctccaagatatgtttcagcatcactacactgctctttgttacaatggcctcatcggcaaatgacacaatgcctgcagataatgagattccattcgctgcttcatctccatctccatctccttatcccgagcttcctgaaagcggaggagattcttcgctctcttcagatgcatcggaatattctccaccaccaccgccgccttatactgatgctttagcagctgaaatagaggcagagcagcttaatctctctccagactactctccttcccctgctccttacttcacacaatacccttctcctcctccttacattgaagttgaggctcctgaagtctatgagctttacactccaactcaagctccaacaccggaaccatcttctgtgttcggatccgatcaattatccgatactgagcctggttctcctgactctgacatggctcctaatcctactgtattgtcgtccaactacagagcagaagacgaaactgttgaatttgacgatgagtattatagttcggagcaaagtaaaaacagggtaacaatggttggttttgtgcttggtgctgtttgcttggttggattggcgggtattgtgttcaataagaagaaatatagcaagtccaaagcagagtacgattacgaattggctaagagagaagatctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.65

Weight (kDa)

4.05

Isoelectric Point (pI)

72.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 156, 209, 212, 605
AclWI GGATC 2 cut(s) 402, 415
AcsI RAATTY 1 cut(s) 512
AcuI CTGAAG 2 cut(s) 162, 366
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 3 cut(s) 332, 512, 619
AjnI CCWGG 1 cut(s) 433
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
AluBI AGCT 6 cut(s) 13, 145, 236, 256, 358, 377
AluI AGCT 6 cut(s) 13, 145, 236, 256, 358, 377
Alw21I GWGCWC 1 cut(s) 15
AlwI GGATC 2 cut(s) 402, 415
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 4 cut(s) 5, 110, 233, 253
ApoI RAATTY 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 140
BamHI GGATCC 1 cut(s) 407
BanII GRGCYC 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 4 cut(s) 17, 97, 245, 265
BccI CCATC 3 cut(s) 130, 136, 400
BciT130I CCWGG 1 cut(s) 435
BfmI CTRYAG 2 cut(s) 87, 487
BglI GCCNNNNNGGC 1 cut(s) 68
BglII AGATCT 1 cut(s) 679
BisI GCNGC 5 cut(s) 6, 111, 212, 234, 254
BlsI GCNGC 5 cut(s) 7, 112, 213, 235, 255
Bme1390I CCNGG 1 cut(s) 435
BmeT110I CYCGRG 1 cut(s) 140
BmiI GGNNCC 4 cut(s) 342, 390, 409, 459
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 4 cut(s) 42, 172, 194, 214
BpiI GAAGAC 1 cut(s) 504
BplI GAGNNNNNCTC 1 cut(s) 666
BpmI CTGGAG 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 357
BsaWI WCCGGW 1 cut(s) 385
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 1 cut(s) 155
BseBI CCWGG 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 420
BseRI GAGGAG 3 cut(s) 174, 306, 309
BseXI GCAGC 4 cut(s) 17, 97, 245, 265
BshFI GGCC 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 155
BsnI GGCC 1 cut(s) 62
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 3 cut(s) 407, 412, 679
BspACI CCGC 4 cut(s) 156, 209, 212, 605
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 421
BspLI GGNNCC 4 cut(s) 342, 390, 409, 459
BspMAI CTGCAG 1 cut(s) 91
BspPI GGATC 2 cut(s) 402, 415
BssMI GATC 3 cut(s) 407, 412, 679
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 2 cut(s) 472, 508
Bst6I CTCTTC 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 429, 669
BstKTI GATC 3 cut(s) 410, 415, 682
BstMBI GATC 3 cut(s) 407, 412, 679
BstMWI GCNNNNNNNGC 2 cut(s) 68, 233
BstNI CCWGG 1 cut(s) 435
BstSCI CCNGG 1 cut(s) 433
BstSFI CTRYAG 2 cut(s) 87, 487
BstV1I GCAGC 4 cut(s) 17, 97, 245, 265
BstV2I GAAGAC 1 cut(s) 504
BstX2I RGATCY 2 cut(s) 407, 679
BstYI RGATCY 2 cut(s) 407, 679
BsuRI GGCC 1 cut(s) 62
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 652
CviAII CATG 1 cut(s) 454
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 2 cut(s) 429, 669
DpnI GATC 3 cut(s) 409, 414, 681
DpnII GATC 3 cut(s) 407, 412, 679
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 13
Eco57I CTGAAG 2 cut(s) 162, 366
Eco88I CYCGRG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 433
EcoT22I ATGCAT 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 15
FaeI CATG 1 cut(s) 457
FaiI YATR 6 cut(s) 25, 219, 354, 455, 531, 633
FatI CATG 1 cut(s) 453
FauI CCCGC 1 cut(s) 598
Fnu4HI GCNGC 5 cut(s) 6, 111, 212, 234, 254
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 5 cut(s) 6, 111, 212, 234, 254
GluI GCNGC 5 cut(s) 6, 111, 212, 234, 254
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 386
Hin1II CATG 1 cut(s) 457
HinfI GANTC 3 cut(s) 100, 164, 446
HpaII CCGG 1 cut(s) 386
Hpy188I TCNGA 8 cut(s) 181, 190, 407, 412, 424, 451, 538, 686
Hpy188III TCNNGA 5 cut(s) 140, 149, 269, 344, 443
HpyAV CCTTC 2 cut(s) 291, 321
HpyCH4III ACNGT 2 cut(s) 472, 508
HpyCH4V TGCA 2 cut(s) 89, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 233
HpyF3I CTNAG 2 cut(s) 429, 669
Hsp92II CATG 1 cut(s) 457
Kzo9I GATC 3 cut(s) 407, 412, 679
LmnI GCTCC 5 cut(s) 295, 346, 382, 463, 538
Lsp1109I GCAGC 4 cut(s) 17, 97, 245, 265
LweI GCATC 4 cut(s) 42, 172, 194, 214
MaeIII GTNAC 2 cut(s) 52, 556
MalI GATC 3 cut(s) 409, 414, 681
MboI GATC 3 cut(s) 407, 412, 679
MboII GAAGA 5 cut(s) 159, 168, 387, 509, 637
MflI RGATCY 2 cut(s) 407, 679
MhlI GDGCHC 1 cut(s) 15
MluCI AATT 3 cut(s) 416, 512, 662
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 4 cut(s) 392, 404, 507, 577
MnlI CCTC 6 cut(s) 73, 152, 238, 327, 330, 331
Mph1103I ATGCAT 1 cut(s) 187
MseI TTAA 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 435
MvaI CCWGG 1 cut(s) 435
MwoI GCNNNNNNNGC 2 cut(s) 68, 233
NdeII GATC 3 cut(s) 407, 412, 679
NlaIII CATG 1 cut(s) 457
NlaIV GGNNCC 4 cut(s) 342, 390, 409, 459
NmeAIII GCCGAG 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 187
PfeI GAWTC 2 cut(s) 100, 164
PkrI GCNGC 5 cut(s) 7, 112, 213, 235, 255
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 433
PspGI CCWGG 1 cut(s) 433
PspN4I GGNNCC 4 cut(s) 342, 390, 409, 459
PstI CTGCAG 1 cut(s) 91
PsuI RGATCY 2 cut(s) 407, 679
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 5 cut(s) 6, 111, 212, 234, 254
Sau3AI GATC 3 cut(s) 407, 412, 679
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 435
SduI GDGCHC 1 cut(s) 15
SetI ASST 6 cut(s) 15, 147, 238, 258, 360, 379
SfaNI GCATC 4 cut(s) 42, 172, 194, 214
SfcI CTRYAG 2 cut(s) 87, 487
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
Sse9I AATT 3 cut(s) 416, 512, 662
SsiI CCGC 4 cut(s) 156, 209, 212, 605
SspI AATATT 1 cut(s) 194
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 433
TaaI ACNGT 2 cut(s) 472, 508
TasI AATT 3 cut(s) 416, 512, 662
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 2 cut(s) 100, 164
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 1 cut(s) 48
TseI GCWGC 4 cut(s) 5, 110, 233, 253
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 1 cut(s) 48
XapI RAATTY 1 cut(s) 512
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.