Rh3DG200400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0012636
Physical Location & Seq
Forward (+)
18189987 .. 18191285
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG200400.1

Sequence Viewer

Length: 681 bp
ATGGCAGCCGAGCTCTCCAAGATATGTTTCTGCATCACTACACTGCTCTTTGTTACAATGGCCTCGTCGGCAAATGACACAATGCCTGCAGATAATGAGATTCTATTCGCTGCTTCATCTCCATCTCCTTATCCTGAGCTTCCTGAAAGCGGAGGAGATTCTTCGCTCTCTTCAGATGCATCGGAATATTCTCCACCACCGCCGCCGCCTTATACTGATGCTTTAGCAGCTGAAATAGAGGCAGAGCAGCTTAATCTCTCTCCAGACTACTCTCCTTCCCCTGCTCCTTACTTCACACAATACCCTTCTCCTCCTCCTTACATTGAAGTTGAGGCTCCTGAAGTCTATGAGCTTTACACTCCAACTCAAGCTCCAGCACCTGAACCATCTTCTGTGTTAGGATCCGATCAATTATCCGATACTGAGCCTGGTTCTCCTGACTCTGACATGGCTCCTAATCCTACTGTATTGTCGTCCAACTACAGAGCAGAAGACGAGAATGTTGAATTTGACGATGAGTATTATAGTTCGGAGCAGAGTAAAAACAGGGTAACAATGGTTGGTTTTGTGCTTGGTGCTGTTTGCTTGGTTGGATTGGCGGGTATTGTGTTCAATAAGAAGAAATATTGCAAGTCCAAAGCAGAGTACGATTACGAATTGGCTAAGAGAGAAGATCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

24.46

Weight (kDa)

4.05

Isoelectric Point (pI)

71.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 150, 200, 203, 206, 599
AclWI GGATC 2 cut(s) 396, 409
AcsI RAATTY 1 cut(s) 506
AcuI CTGAAG 2 cut(s) 156, 360
AfaI GTAC 1 cut(s) 647
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 3 cut(s) 326, 506, 613
AjnI CCWGG 1 cut(s) 427
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
AluBI AGCT 6 cut(s) 13, 139, 230, 250, 352, 371
AluI AGCT 6 cut(s) 13, 139, 230, 250, 352, 371
Alw21I GWGCWC 1 cut(s) 15
AlwI GGATC 2 cut(s) 396, 409
AlwNI CAGNNNCTG 1 cut(s) 380
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 4 cut(s) 5, 110, 227, 247
ApoI RAATTY 1 cut(s) 506
BamHI GGATCC 1 cut(s) 401
BanII GRGCYC 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 4 cut(s) 17, 97, 239, 259
BccI CCATC 2 cut(s) 130, 394
BciT130I CCWGG 1 cut(s) 429
BfmI CTRYAG 2 cut(s) 87, 481
BglI GCCNNNNNGGC 1 cut(s) 68
BglII AGATCT 1 cut(s) 673
BisI GCNGC 6 cut(s) 6, 111, 203, 206, 228, 248
BlsI GCNGC 6 cut(s) 7, 112, 204, 207, 229, 249
Bme1390I CCNGG 1 cut(s) 429
BmiI GGNNCC 3 cut(s) 336, 403, 453
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 4 cut(s) 42, 166, 188, 208
BpiI GAAGAC 1 cut(s) 498
BplI GAGNNNNNCTC 1 cut(s) 660
BpmI CTGGAG 2 cut(s) 246, 357
Bpu10I CCTNAGC 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 429
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 2 cut(s) 126, 414
BseRI GAGGAG 3 cut(s) 168, 300, 303
BseXI GCAGC 4 cut(s) 17, 97, 239, 259
BshFI GGCC 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 149
BsnI GGCC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 3 cut(s) 401, 406, 673
BspACI CCGC 5 cut(s) 150, 200, 203, 206, 599
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 2 cut(s) 127, 415
BspLI GGNNCC 3 cut(s) 336, 403, 453
BspMAI CTGCAG 1 cut(s) 91
BspPI GGATC 2 cut(s) 396, 409
BssMI GATC 3 cut(s) 401, 406, 673
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 3 cut(s) 135, 423, 663
BstKTI GATC 3 cut(s) 404, 409, 676
BstMBI GATC 3 cut(s) 401, 406, 673
BstMWI GCNNNNNNNGC 2 cut(s) 68, 227
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 427
BstSFI CTRYAG 2 cut(s) 87, 481
BstV1I GCAGC 4 cut(s) 17, 97, 239, 259
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 2 cut(s) 401, 673
BstYI RGATCY 2 cut(s) 401, 673
BsuRI GGCC 1 cut(s) 62
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 87
CaiI CAGNNNCTG 1 cut(s) 380
Csp6I GTAC 1 cut(s) 646
CviAII CATG 1 cut(s) 448
CviQI GTAC 1 cut(s) 646
DdeI CTNAG 3 cut(s) 135, 423, 663
DpnI GATC 3 cut(s) 403, 408, 675
DpnII GATC 3 cut(s) 401, 406, 673
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
Ecl136II GAGCTC 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 13
Eco57I CTGAAG 2 cut(s) 156, 360
EcoICRI GAGCTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 427
EcoT22I ATGCAT 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 15
FaeI CATG 1 cut(s) 451
FaiI YATR 5 cut(s) 25, 213, 348, 449, 525
FatI CATG 1 cut(s) 447
FauI CCCGC 1 cut(s) 592
Fnu4HI GCNGC 6 cut(s) 6, 111, 203, 206, 228, 248
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 6 cut(s) 6, 111, 203, 206, 228, 248
GluI GCNGC 6 cut(s) 6, 111, 203, 206, 228, 248
GsuI CTGGAG 2 cut(s) 246, 357
HaeIII GGCC 1 cut(s) 62
Hin1II CATG 1 cut(s) 451
HinfI GANTC 3 cut(s) 100, 158, 440
Hpy188I TCNGA 7 cut(s) 175, 184, 406, 418, 445, 532, 680
Hpy188III TCNNGA 5 cut(s) 134, 143, 263, 338, 437
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 2 cut(s) 285, 315
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4V TGCA 4 cut(s) 33, 89, 179, 630
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 227
HpyF3I CTNAG 3 cut(s) 135, 423, 663
Hsp92II CATG 1 cut(s) 451
Kzo9I GATC 3 cut(s) 401, 406, 673
LmnI GCTCC 5 cut(s) 289, 340, 376, 457, 532
Lsp1109I GCAGC 4 cut(s) 17, 97, 239, 259
LweI GCATC 4 cut(s) 42, 166, 188, 208
MaeIII GTNAC 2 cut(s) 52, 550
MalI GATC 3 cut(s) 403, 408, 675
MboI GATC 3 cut(s) 401, 406, 673
MboII GAAGA 5 cut(s) 153, 162, 381, 503, 631
MflI RGATCY 2 cut(s) 401, 673
MhlI GDGCHC 1 cut(s) 15
MluCI AATT 3 cut(s) 410, 506, 656
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 3 cut(s) 386, 501, 571
MnlI CCTC 6 cut(s) 73, 146, 232, 321, 324, 325
Mph1103I ATGCAT 1 cut(s) 181
MseI TTAA 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 429
MwoI GCNNNNNNNGC 2 cut(s) 68, 227
NdeII GATC 3 cut(s) 401, 406, 673
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 3 cut(s) 336, 403, 453
NmeAIII GCCGAG 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 181
PfeI GAWTC 2 cut(s) 100, 158
PkrI GCNGC 6 cut(s) 7, 112, 204, 207, 229, 249
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 3 cut(s) 336, 403, 453
PstI CTGCAG 1 cut(s) 91
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 2 cut(s) 401, 673
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 647
RsaNI GTAC 1 cut(s) 646
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 6 cut(s) 6, 111, 203, 206, 228, 248
Sau3AI GATC 3 cut(s) 401, 406, 673
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 15
SetI ASST 7 cut(s) 15, 141, 232, 252, 354, 373, 382
SfaNI GCATC 4 cut(s) 42, 166, 188, 208
SfcI CTRYAG 2 cut(s) 87, 481
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 3 cut(s) 410, 506, 656
SsiI CCGC 5 cut(s) 150, 200, 203, 206, 599
SspI AATATT 2 cut(s) 188, 626
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 427
TaaI ACNGT 1 cut(s) 466
TasI AATT 3 cut(s) 410, 506, 656
TauI GCSGC 2 cut(s) 205, 208
TfiI GAWTC 2 cut(s) 100, 158
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 48
TseI GCWGC 4 cut(s) 5, 110, 227, 247
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 1 cut(s) 48
XapI RAATTY 1 cut(s) 506
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.