Prupe.6G237100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012636
Physical Location & Seq
Forward (+)
23756417 .. 23757531
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G237100.1

Sequence Viewer

Length: 729 bp
ATGGCATCAGCTGAGCTCTCCAAGCTATGCATCTGCATTGTCACATTGCTCTCTTTGGCAATGCATGCTATGTCTGCACAAACGCAATCCCAACCCACAATCACAAACGACGTCAAGCCTACAGATGAGCAGCTCATTTCCCTACCTGCTTCATCTCCATCTCCATCTCCTTACCCCGAAAACCTGGCTCCCGAAAGCGGAGGCTATGTGGTCTCTTTACCAGAACCAGATTCGTACAATCCTCCACCACCACCACCACAAGAACCTTACATTGAAGCCTTGTCCCCTGAAACTCAAGATGACCAGCTTCTCCCTCCAGACTACTCTCCCTCCCCTGCACCTTCCCTCCAAGAATACTTGGGTGCTTCCGATCAAATCACAGACTACCCTTCTCCTCCTCCTCCTCCTCCTCCATACACTGAAGTTGAAGCTCCTGAAGGTTACTCTGAGACTTACAGTCCAGTTCAATCTCAAGCACCTGCACAATCTTCAAAGCCGGGCTCTAATGAGTTGCCCTTCAACTACAAAGCTGACTACGAGAGTGAGTTTGATGCACAAGATTTTAATGATTCAGATGAGAGTAAGAACAGAGGAACAATGGTGGGTTTTGTTCTTGGGGCTGTTTGCTTGGTTGGCTTGGCAGGTCTTGTGTACAAGAAGAAGGATAAGAAGTACACTAAGGCAAAAGCAGAGTATGAGTATGAATTGACTAAGAGAGAGGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

26.24

Weight (kDa)

4.19

Isoelectric Point (pI)

77.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 487
AatII GACGTC 1 cut(s) 114
Acc36I ACCTGC 3 cut(s) 154, 487, 632
AciI CCGC 1 cut(s) 198
AcuI CTGAAG 2 cut(s) 441, 456
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 3 cut(s) 236, 653, 674
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 5 cut(s) 275, 428, 467, 492, 520
AhdI GACNNNNNGTC 1 cut(s) 456
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 7 cut(s) 11, 16, 25, 133, 307, 431, 530
AluI AGCT 7 cut(s) 11, 16, 25, 133, 307, 431, 530
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 2 cut(s) 217, 443
ApeKI GCWGC 1 cut(s) 130
AsuC2I CCSGG 1 cut(s) 498
BanII GRGCYC 2 cut(s) 18, 503
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 166, 172
BciT130I CCWGG 1 cut(s) 185
BcnI CCSGG 1 cut(s) 498
BcoDI GTCTC 2 cut(s) 217, 443
BfmI CTRYAG 1 cut(s) 120
BfuAI ACCTGC 3 cut(s) 154, 487, 632
BisI GCNGC 1 cut(s) 131
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 2 cut(s) 185, 498
BmeRI GACNNNNNGTC 1 cut(s) 456
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 2 cut(s) 185, 498
BmsI GCATC 4 cut(s) 14, 39, 541, 712
BpmI CTGGAG 1 cut(s) 300
Bpu1102I GCTNAGC 1 cut(s) 12
BpuEI CTTGAG 2 cut(s) 279, 456
BpuMI CCSGG 1 cut(s) 498
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 217
BsaXI ACNNNNNCTCC 6 cut(s) 192, 222, 314, 330, 344, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 461
Bse3DI GCAATG 2 cut(s) 44, 66
BseBI CCWGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 727
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 2 cut(s) 44, 66
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 461
BseRI GAGGAG 6 cut(s) 384, 387, 390, 393, 396, 399
BseXI GCAGC 1 cut(s) 142
BsgI GTGCAG 3 cut(s) 60, 321, 465
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 497
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 2 cut(s) 217, 443
BsmFI GGGAC 1 cut(s) 268
Bso31I GGTCTC 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 18, 503
Bsp1407I TGTACA 1 cut(s) 651
Bsp143I GATC 1 cut(s) 370
Bsp1720I GCTNAGC 1 cut(s) 12
BspACI CCGC 1 cut(s) 198
BspCNI CTCAG 2 cut(s) 4, 439
BspLI GGNNCC 1 cut(s) 189
BspMI ACCTGC 3 cut(s) 154, 487, 632
BspTNI GGTCTC 1 cut(s) 217
BsrDI GCAATG 2 cut(s) 44, 66
BsrGI TGTACA 1 cut(s) 651
BsrI ACTGG 1 cut(s) 461
BssMI GATC 1 cut(s) 370
BssNI GRCGYC 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 458
BstACI GRCGYC 1 cut(s) 111
BstAPI GCANNNNNTGC 1 cut(s) 65
BstAUI TGTACA 1 cut(s) 651
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 4 cut(s) 12, 447, 678, 711
BstF5I GGATG 1 cut(s) 727
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 2 cut(s) 217, 443
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 4 cut(s) 22, 65, 74, 633
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 183, 496
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 727
BtsIMutI CAGTG 1 cut(s) 417
BveI ACCTGC 3 cut(s) 154, 487, 632
Cac8I GCNNGC 1 cut(s) 66
Csp6I GTAC 3 cut(s) 235, 652, 673
CviAII CATG 1 cut(s) 65
CviQI GTAC 3 cut(s) 235, 652, 673
DdeI CTNAG 4 cut(s) 12, 447, 678, 711
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
DriI GACNNNNNGTC 1 cut(s) 456
Eam1105I GACNNNNNGTC 1 cut(s) 456
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 2 cut(s) 18, 503
Eco31I GGTCTC 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 16
Eco57I CTGAAG 2 cut(s) 441, 456
EcoICRI GAGCTC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 183
EcoT22I ATGCAT 2 cut(s) 32, 66
EcoT38I GRGCYC 2 cut(s) 18, 503
FaeI CATG 1 cut(s) 68
FaiI YATR 7 cut(s) 28, 66, 71, 207, 415, 696, 702
FaqI GGGAC 1 cut(s) 268
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 131
FriOI GRGCYC 2 cut(s) 18, 503
Fsp4HI GCNGC 1 cut(s) 131
GluI GCNGC 1 cut(s) 131
GsuI CTGGAG 1 cut(s) 300
HapII CCGG 1 cut(s) 497
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 1 cut(s) 68
HinfI GANTC 2 cut(s) 230, 569
HpaII CCGG 1 cut(s) 497
Hpy166II GTNNAC 2 cut(s) 652, 675
Hpy188I TCNGA 3 cut(s) 370, 448, 574
Hpy188III TCNNGA 4 cut(s) 191, 296, 317, 434
Hpy8I GTNNAC 2 cut(s) 652, 675
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 5 cut(s) 351, 399, 431, 526, 655
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 7 cut(s) 30, 36, 64, 77, 338, 482, 554
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 65, 74, 633
HpyF3I CTNAG 4 cut(s) 12, 447, 678, 711
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 1 cut(s) 68
Kzo9I GATC 1 cut(s) 370
LmnI GCTCC 2 cut(s) 193, 436
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 4 cut(s) 14, 39, 541, 712
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 40, 440
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 2 cut(s) 480, 670
MhlI GDGCHC 2 cut(s) 18, 503
MluCI AATT 1 cut(s) 704
Mph1103I ATGCAT 2 cut(s) 32, 66
MseI TTAA 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 497
MspR9I CCNGG 2 cut(s) 185, 498
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 4 cut(s) 22, 65, 74, 633
NciI CCSGG 1 cut(s) 498
NdeII GATC 1 cut(s) 370
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 2 cut(s) 32, 66
NspI RCATGY 1 cut(s) 68
PaeI GCATGC 1 cut(s) 68
PaqCI CACCTGC 1 cut(s) 487
PfeI GAWTC 2 cut(s) 230, 569
PkrI GCNGC 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 189
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 3 cut(s) 236, 653, 674
RsaNI GTAC 3 cut(s) 235, 652, 673
SacI GAGCTC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 564
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 1 cut(s) 370
ScrFI CCNGG 2 cut(s) 185, 498
SduI GDGCHC 2 cut(s) 18, 503
SfaNI GCATC 4 cut(s) 14, 39, 541, 712
SfcI CTRYAG 1 cut(s) 120
SmlI CTYRAG 2 cut(s) 294, 471
SmoI CTYRAG 2 cut(s) 294, 471
SphI GCATGC 1 cut(s) 68
Sse9I AATT 1 cut(s) 704
SsiI CCGC 1 cut(s) 198
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 183, 496
TaaI ACNGT 1 cut(s) 458
TaiI ACGT 1 cut(s) 114
TasI AATT 1 cut(s) 704
TatI WGTACW 2 cut(s) 651, 672
TfiI GAWTC 2 cut(s) 230, 569
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 141, 717
TspRI CASTG 1 cut(s) 424
XceI RCATGY 1 cut(s) 68
ZraI GACGTC 1 cut(s) 112
Zsp2I ATGCAT 2 cut(s) 32, 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.