FvH4_6g15810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012636
Physical Location & Seq
Reverse (-)
9870229 .. 9870894
666 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15810.t1

Sequence Viewer

Length: 666 bp
ATGGCATCTGAGCTCTCCAAGTTATTAATCTGCGTAATTCTGCTCTCCCTAACAATGGCCTCATCGACAAACGAAATGCCTGCAGATGGTGAGATTTTATTCTCTCCTTCATCTCTGTCTTCTTATCCAGAGCCTCCCAAAAGTACCGTATATTCTTTGCTCTCTTCAGATTCATCAGAACATTCTCCTCCACCAACACCATCTTACATTGATGCTGTAGCCGCTGAAATTGAAACAGAGCAGCTTAATCTCTCTCCGGACTACTCTCCTTCACCATCTCCTTACTTCACCAATTACCCTTCTCCTCCTTACAATATTGAAATTGAGGCTCCTGAAGTCTATGAGCAAGCTCCAGCACCTGAACCGTCTTCTAGTTTTTGGTCGGATCAGTCAGCTGACACTTGGTCTGGTTCTCCAGACTCTGCAGCCTTAGCTCCACATCCTACTGTATTGCCAGTCGATTACAGAGCAGAGGACGAGAACGGTGATTTTGAAGGTGAAGAATATAGTTCGGAACAAAGCAAGAACCGGATGACGATGGTAGGTTTTGTGCTTGGTGCTATTTGCTTGGTGGCATTGGCTGGTTTTGTCTATAATAATAAGAAGAAAGATAGTAAGCCAATTTCAGAGGACCAGTACGAATTGACCAGGAGGGAGGACGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.11

Weight (kDa)

4.07

Isoelectric Point (pI)

79.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 663
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 1 cut(s) 222
AclWI GGATC 1 cut(s) 393
AcuI CTGAAG 2 cut(s) 150, 354
AcyI GRCGYC 1 cut(s) 660
AfaI GTAC 2 cut(s) 145, 638
AfiI CCNNNNNNNGG 2 cut(s) 55, 86
AgsI TTSAA 3 cut(s) 233, 320, 494
AhdI GACNNNNNGTC 1 cut(s) 403
AjnI CCWGG 1 cut(s) 647
AluBI AGCT 5 cut(s) 13, 244, 350, 395, 434
AluI AGCT 5 cut(s) 13, 244, 350, 395, 434
Alw21I GWGCWC 1 cut(s) 15
AlwI GGATC 1 cut(s) 393
AlwNI CAGNNNCTG 2 cut(s) 359, 422
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 241, 425
AseI ATTAAT 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 631
AsuHPI GGTGA 5 cut(s) 101, 264, 280, 497, 509
AvaII GGWCC 1 cut(s) 631
BanII GRGCYC 1 cut(s) 15
BbsI GAAGAC 2 cut(s) 111, 360
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 2 cut(s) 253, 437
BccI CCATC 4 cut(s) 80, 208, 283, 532
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 1 cut(s) 649
BfaI CTAG 1 cut(s) 372
BfmI CTRYAG 3 cut(s) 81, 216, 423
BisI GCNGC 3 cut(s) 222, 242, 426
BlsI GCNGC 3 cut(s) 223, 243, 427
Bme1390I CCNGG 1 cut(s) 649
Bme18I GGWCC 1 cut(s) 631
BmeRI GACNNNNNGTC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 631
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 1 cut(s) 649
BmsI GCATC 2 cut(s) 14, 202
BpiI GAAGAC 2 cut(s) 111, 360
BpmI CTGGAG 2 cut(s) 336, 399
Bpu10I CCTNAGC 1 cut(s) 430
BsaHI GRCGYC 1 cut(s) 660
BsaWI WCCGGW 2 cut(s) 256, 528
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 86
Bse1I ACTGG 2 cut(s) 455, 634
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 1 cut(s) 649
BseGI GGATG 2 cut(s) 439, 537
BseLI CCNNNNNNNGG 2 cut(s) 55, 86
BseNI ACTGG 2 cut(s) 455, 634
BseRI GAGGAG 2 cut(s) 177, 294
BseXI GCAGC 2 cut(s) 253, 437
BshFI GGCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 15
BsiSI CCGG 2 cut(s) 257, 529
BslI CCNNNNNNNGG 2 cut(s) 55, 86
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 15
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 1 cut(s) 385
BspACI CCGC 1 cut(s) 222
BspANI GGCC 1 cut(s) 59
BspEI TCCGGA 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 330
BspMAI CTGCAG 2 cut(s) 85, 427
BspPI GGATC 1 cut(s) 393
BsrI ACTGG 2 cut(s) 455, 634
BssMI GATC 1 cut(s) 385
BssNI GRCGYC 1 cut(s) 660
Bst2UI CCWGG 1 cut(s) 649
Bst4CI ACNGT 4 cut(s) 148, 366, 448, 485
Bst6I CTCTTC 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 660
BstC8I GCNNGC 2 cut(s) 81, 348
BstDEI CTNAG 2 cut(s) 9, 430
BstF5I GGATG 2 cut(s) 439, 537
BstKTI GATC 1 cut(s) 388
BstMBI GATC 1 cut(s) 385
BstMWI GCNNNNNNNGC 2 cut(s) 221, 431
BstNI CCWGG 1 cut(s) 649
BstSCI CCNGG 1 cut(s) 647
BstSFI CTRYAG 3 cut(s) 81, 216, 423
BstV1I GCAGC 2 cut(s) 253, 437
BstV2I GAAGAC 2 cut(s) 111, 360
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 2 cut(s) 439, 537
Cac8I GCNNGC 2 cut(s) 81, 348
CaiI CAGNNNCTG 2 cut(s) 359, 422
Cfr13I GGNCC 1 cut(s) 631
Csp6I GTAC 2 cut(s) 144, 637
CviQI GTAC 2 cut(s) 144, 637
DdeI CTNAG 2 cut(s) 9, 430
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
DriI GACNNNNNGTC 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 169
Eam1105I GACNNNNNGTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 169
Ecl136II GAGCTC 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 631
Eco53kI GAGCTC 1 cut(s) 13
Eco57I CTGAAG 2 cut(s) 150, 354
EcoICRI GAGCTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 647
EcoT38I GRGCYC 1 cut(s) 15
FaiI YATR 4 cut(s) 151, 342, 507, 594
Fnu4HI GCNGC 3 cut(s) 222, 242, 426
FokI GGATG 2 cut(s) 426, 544
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 3 cut(s) 222, 242, 426
FspBI CTAG 1 cut(s) 372
GluI GCNGC 3 cut(s) 222, 242, 426
GsuI CTGGAG 2 cut(s) 336, 399
HaeIII GGCC 1 cut(s) 59
HapII CCGG 2 cut(s) 257, 529
Hin1I GRCGYC 1 cut(s) 660
HinfI GANTC 2 cut(s) 170, 419
HpaII CCGG 2 cut(s) 257, 529
HphI GGTGA 5 cut(s) 101, 264, 280, 497, 509
Hpy188I TCNGA 7 cut(s) 10, 169, 178, 385, 514, 628, 665
Hpy188III TCNNGA 4 cut(s) 128, 257, 332, 416
HpyAV CCTTC 4 cut(s) 117, 279, 309, 488
HpyCH4III ACNGT 4 cut(s) 148, 366, 448, 485
HpyCH4IV ACGT 1 cut(s) 660
HpyCH4V TGCA 2 cut(s) 83, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 431
HpyF3I CTNAG 2 cut(s) 9, 430
HpySE526I ACGT 1 cut(s) 660
Hsp92I GRCGYC 1 cut(s) 660
Kpn2I TCCGGA 1 cut(s) 256
Kzo9I GATC 1 cut(s) 385
LmnI GCTCC 3 cut(s) 334, 355, 439
Lsp1109I GCAGC 2 cut(s) 253, 437
LweI GCATC 2 cut(s) 14, 202
MaeI CTAG 1 cut(s) 372
MaeII ACGT 1 cut(s) 660
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MboII GAAGA 5 cut(s) 111, 156, 360, 512, 616
MhlI GDGCHC 1 cut(s) 15
MluCI AATT 6 cut(s) 36, 228, 292, 321, 621, 641
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 9 cut(s) 70, 144, 198, 315, 319, 466, 622, 645, 649
MroI TCCGGA 1 cut(s) 256
MseI TTAA 2 cut(s) 26, 246
MspA1I CMGCKG 2 cut(s) 224, 395
MspI CCGG 2 cut(s) 257, 529
MspR9I CCNGG 1 cut(s) 649
MvaI CCWGG 1 cut(s) 649
MwoI GCNNNNNNNGC 2 cut(s) 221, 431
NdeII GATC 1 cut(s) 385
NlaIV GGNNCC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 3 cut(s) 223, 243, 427
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
PshBI ATTAAT 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 647
PspGI CCWGG 1 cut(s) 647
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 1 cut(s) 631
PstI CTGCAG 2 cut(s) 85, 427
PstNI CAGNNNCTG 2 cut(s) 359, 422
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 2 cut(s) 145, 638
RsaNI GTAC 2 cut(s) 144, 637
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 26, 246
SatI GCNGC 3 cut(s) 222, 242, 426
Sau3AI GATC 1 cut(s) 385
Sau96I GGNCC 1 cut(s) 631
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 649
SduI GDGCHC 1 cut(s) 15
SetI ASST 9 cut(s) 15, 246, 352, 361, 397, 436, 499, 547, 663
SfaNI GCATC 2 cut(s) 14, 202
SfcI CTRYAG 3 cut(s) 81, 216, 423
SinI GGWCC 1 cut(s) 631
Sse9I AATT 6 cut(s) 36, 228, 292, 321, 621, 641
SsiI CCGC 1 cut(s) 222
SspI AATATT 1 cut(s) 316
SspMI CTAG 1 cut(s) 372
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 647
TaaI ACNGT 4 cut(s) 148, 366, 448, 485
TaiI ACGT 1 cut(s) 663
TaqI TCGA 2 cut(s) 65, 459
TasI AATT 6 cut(s) 36, 228, 292, 321, 621, 641
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 2 cut(s) 26, 246
Tru9I TTAA 2 cut(s) 26, 246
TseI GCWGC 2 cut(s) 241, 425
TspDTI ATGAA 2 cut(s) 99, 162
VpaK11BI GGWCC 1 cut(s) 631
VspI ATTAAT 1 cut(s) 26
XspI CTAG 1 cut(s) 372
ZraI GACGTC 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.