Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0012636

Physical Location & Seq

Genomic Coordinates Reverse (-)

14257150 .. 14257773

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G014290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCCTCATCGGCAAATGACACAATGCCTGCAGATAATGAGATTCTATTCGCTGCTTCATCTCCATCTCCTTATCCCGAGCTTCCTGAAAGCGGAGGAGATTCTTCGCTCTCTTCAGATCAGCTTAATCTCTCTCCAGACTACTCTCCTTCCCCTGCTCCTTACTTCACACAATACCCTTCTCCTCCTCCTTACATTGAAGTTGAGGCTCCTGAAGTCTATGAGCTTTACACTCCAACTCAAGCTCCAGCACCTGAACCATCTTCTGTGTTCGGATCCGATCAATTATCCGATACTGAGCCTGGTTCTCCTGACTCTGACATGGCTCCTAATCCTACTGTATTGTCGTCCAACTACAGAGCAGAAGACGAGAATGTTGAATTTGACGATGAGTATTATAGTTCGGAGCAGAGTAAAAACAGGGTAACAATGGTTGGTTTTGTGCTTGGTGCTGTTTGCTTGGTTGGATTGGCGGGTGTTGTGTTCAATAAGAAGAAATATAGCAAGTCCAAAGCAGAGTACGATTACGAATTGGCTAAGAGAGAAGATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

19.98

Weight (kDa)

4.05

Isoelectric Point (pI)

74.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15790 FvH4_6g15810
prunus_persica	Prupe.6G237100_v2.0.a1
pyrus_communis	pycom04g09370 pycom12g11790
rosa_laevigata	RLG00000024343 RLG00000024344
rosa_multiflora	Rmu_sc0004871.1_g000009
rosa_roxburghii	Rroxscaffold_6G00411800
rosa_rugosa	Rorug03G0102300
rosa_samantha	Rh3AG151600 Rh3AG151700 Rh3BG175100 Rh3BG175200 Rh3CG166300 Rh3CG166500 Rh3DG200300 Rh3DG200400
rosa_wichuraiana	Rw3G014290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	93, 473
AclWI	GGATC	2 cut(s)	270, 283
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	2 cut(s)	99, 234
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	200, 380, 487
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	4 cut(s)	82, 124, 226, 245
AluI	AGCT	4 cut(s)	82, 124, 226, 245
AlwI	GGATC	2 cut(s)	270, 283
AlwNI	CAGNNNCTG	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	2 cut(s)	73, 268
BciT130I	CCWGG	1 cut(s)	303
BfmI	CTRYAG	2 cut(s)	30, 355
BglI	GCCNNNNNGGC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	303
BmeT110I	CYCGRG	1 cut(s)	77
BmiI	GGNNCC	3 cut(s)	210, 277, 327
BmrFI	CCNGG	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	372
BplI	GAGNNNNNCTC	1 cut(s)	534
BpmI	CTGGAG	2 cut(s)	120, 231
BpuEI	CTTGAG	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	288
BseRI	GAGGAG	3 cut(s)	111, 174, 177
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	92
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	77
Bsp143I	GATC	4 cut(s)	118, 275, 280, 547
BspACI	CCGC	2 cut(s)	93, 473
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	3 cut(s)	210, 277, 327
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	2 cut(s)	270, 283
BssMI	GATC	4 cut(s)	118, 275, 280, 547
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	297, 537
BstKTI	GATC	4 cut(s)	121, 278, 283, 550
BstMBI	GATC	4 cut(s)	118, 275, 280, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	2 cut(s)	30, 355
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	2 cut(s)	275, 547
BstYI	RGATCY	2 cut(s)	275, 547
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	30
CaiI	CAGNNNCTG	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	9 cut(s)	5, 82, 124, 209, 226, 245, 301, 326, 536
CviKI_1	RGCY	9 cut(s)	5, 82, 124, 209, 226, 245, 301, 326, 536
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	2 cut(s)	297, 537
DpnI	GATC	4 cut(s)	120, 277, 282, 549
DpnII	GATC	4 cut(s)	118, 275, 280, 547
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco57I	CTGAAG	2 cut(s)	99, 234
Eco88I	CYCGRG	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	301
FaeI	CATG	1 cut(s)	325
FaiI	YATR	4 cut(s)	222, 323, 399, 501
FatI	CATG	1 cut(s)	321
FauI	CCCGC	1 cut(s)	466
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
GsuI	CTGGAG	2 cut(s)	120, 231
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	325
HinfI	GANTC	3 cut(s)	43, 101, 314
Hpy188I	TCNGA	7 cut(s)	118, 275, 280, 292, 319, 406, 554
Hpy188III	TCNNGA	5 cut(s)	77, 86, 137, 212, 311
HpyAV	CCTTC	2 cut(s)	159, 189
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	297, 537
Hsp92II	CATG	1 cut(s)	325
Kzo9I	GATC	4 cut(s)	118, 275, 280, 547
LmnI	GCTCC	5 cut(s)	163, 214, 250, 331, 406
Lsp1109I	GCAGC	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	4 cut(s)	120, 277, 282, 549
MboI	GATC	4 cut(s)	118, 275, 280, 547
MboII	GAAGA	5 cut(s)	96, 105, 255, 377, 505
MflI	RGATCY	2 cut(s)	275, 547
MluCI	AATT	3 cut(s)	284, 380, 530
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	3 cut(s)	260, 375, 445
MnlI	CCTC	5 cut(s)	16, 89, 195, 198, 199
MseI	TTAA	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	4 cut(s)	118, 275, 280, 547
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	3 cut(s)	210, 277, 327
PfeI	GAWTC	2 cut(s)	43, 101
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	210, 277, 327
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	275, 547
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	4 cut(s)	118, 275, 280, 547
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	303
SetI	ASST	5 cut(s)	84, 126, 228, 247, 256
SfcI	CTRYAG	2 cut(s)	30, 355
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
Sse9I	AATT	3 cut(s)	284, 380, 530
SsiI	CCGC	2 cut(s)	93, 473
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	340
TasI	AATT	3 cut(s)	284, 380, 530
TfiI	GAWTC	2 cut(s)	43, 101
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	48
XapI	RAATTY	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.