Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004239

Physical Location & Seq

Genomic Coordinates Forward (+)

12336389 .. 12340106

Gene Structure 3718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18710.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCGTCGGGTTTGCACCAATGGGAATCAGACCCTCTCTTTTCAGCCGCTGAAGTTGTTCAAGATTCCGCTGACAGGATGGAATCGATTTTCCGCTTTCTGCTGCATGAGCTAGGTCTTGTTCAAGATGACTTTCCGGACCCAAAGTTGCATGCGTCGATAGATTATCATAAGCGTGAGCTTGCAACCACACTTGAAACGGCAAAGTGGCAGGTGTTGGAAGATTTTGAAAGAGCAGTCAGCTTTTCAGCTATGACAGGCAAATCCCAGATAAACGGGGATGTAATTTCAAGGCACAAGCAGTTTATCAGAGCCATTAGGGAACAAATAGCTTATGTGGAGAAGAGCTTGGAGGGCAAATCAATCGAGGATCCAATGAGAAATACAAGATGGGTCAACTTGAATGAACAAGATAGAGATGGGTTGGCATTGTTTCTTACTGGGGGAAATGTCACATCTGATTCTTATGATGGAGAAGACAGTAATATGTTGAGAAGATTTCTTGATCCAGCCACGTCATCTAGTGCCAAAGACGGCACTTCTGGGATTGTTGAACAGAAAAGCAGAGAAGTTGAGAATGGAGTAGTGCATGTGGACAATAATATTAATTCTAGGAAGGAGAACAACTTGAGGAAAGTCAGTTCTTATCCTAATACGAGGTTAGGATTTGAATTTACAGAGACCTCTTGTAAGAGACATGGTGAAGGTGGTAGTTGGGATCTGGAGGCTGATGAAGCAATACCAGAAAACTTCTCAAGCAAGAACAAGTTGAGAGGTGTCTGGAGCAGAATTAATCCATATGGGTTCTTGACTAACATATGGACTAATTATGGGAGTAGGGTCACTAGGAGTTATACTAAGAGATTTAAAGATGGAGAAGAACAAAGTCATTCCCCATCATCTGCTGATGTATCTCATGCCCCCCAGGGTAATCAGGGTATGTGGTTAGCCAATGGGTATAGATATTTCAATGCACTACCTCTTCAGTTTCGAACACAAATTATGCACTTGCAGAGCTGGCTTGGTGTAATTAGGGCAAGATACCAAAGATCACCTTACCGCATCCAAGTCCAGAGATATGCTATTCTGTTGGTTTTGATAATAGTATTGGGACTTATTATTATAGGTACCCATCTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syntaxin-6_N

Protein Analysis

381

Amino Acids

43.24

Weight (kDa)

6.43

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004239)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710
malus_domestica	MD12G1036300.v1.1 MD14G1023100.v1.1
prunus_persica	Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1
pyrus_communis	pycom14g02200
rosa_chinensis	RchiOBHm_Chr3g0473681
rosa_laevigata	RLG00000023994
rosa_multiflora	Rmu_sc0003069.1_g000003 Rmu_sc0004984.1_g000006 Rmu_sc0005978.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407950
rosa_rugosa	Rorug03G0133900 Rorug03G0133900 Rorug03G0134000 Rorug03G0134100 Rorug03G0134200
rosa_samantha	Rh3AG185500 Rh3BG213500 Rh3CG210200 Rh3DG209300
rosa_wichuraiana	Rw0G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
Acc36I	ACCTGC	1 cut(s)	202
Acc65I	GGTACC	1 cut(s)	1127
AccB1I	GGYRCC	1 cut(s)	1127
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	4 cut(s)	48, 69, 94, 1060
AclWI	GGATC	4 cut(s)	365, 378, 500, 726
AcsI	RAATTY	1 cut(s)	671
AcuI	CTGAAG	2 cut(s)	72, 968
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	1129
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	9 cut(s)	62, 125, 197, 230, 291, 403, 554, 671, 970
AjiI	CACGTC	1 cut(s)	516
AjnI	CCWGG	1 cut(s)	924
AloI	GAACNNNNNNTCC	2 cut(s)	625, 657
AluBI	AGCT	7 cut(s)	112, 181, 243, 251, 332, 348, 1017
AluI	AGCT	7 cut(s)	112, 181, 243, 251, 332, 348, 1017
Alw26I	GTCTC	2 cut(s)	674, 688
AlwI	GGATC	4 cut(s)	365, 378, 500, 726
AlwNI	CAGNNNCTG	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	671
AseI	ATTAAT	2 cut(s)	606, 792
Asp700I	GAANNNNTTC	1 cut(s)	57
Asp718I	GGTACC	1 cut(s)	1127
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	713, 1044
AsuII	TTCGAA	1 cut(s)	991
AvaII	GGWCC	1 cut(s)	139
BamHI	GGATCC	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	1127
BbsI	GAAGAC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	7 cut(s)	73, 384, 413, 464, 866, 904, 1140
BceAI	ACGGC	2 cut(s)	216, 550
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BciT130I	CCWGG	1 cut(s)	926
BcoDI	GTCTC	2 cut(s)	674, 688
BfaI	CTAG	4 cut(s)	113, 522, 612, 846
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	2 cut(s)	48, 104
BlsI	GCNGC	2 cut(s)	49, 105
Bme1390I	CCNGG	1 cut(s)	926
Bme18I	GGWCC	1 cut(s)	139
BmgBI	CACGTC	1 cut(s)	516
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	3 cut(s)	141, 372, 1129
BmrFI	CCNGG	1 cut(s)	926
BmrI	ACTGGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	1071
BmuI	ACTGGG	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	483
BpmI	CTGGAG	2 cut(s)	743, 802
Bpu14I	TTCGAA	1 cut(s)	991
BpuEI	CTTGAG	2 cut(s)	649, 739
Bsa29I	ATCGAT	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	674
BsaJI	CCNNGG	2 cut(s)	924, 925
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	445
BseAI	TCCGGA	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	926
BseCI	ATCGAT	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	924, 925
BseGI	GGATG	3 cut(s)	84, 286, 1062
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	445
BseXI	GCAGC	1 cut(s)	90
BshNI	GGYRCC	1 cut(s)	1127
BshVI	ATCGAT	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	1125
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	2 cut(s)	674, 688
BsmFI	GGGAC	1 cut(s)	1125
Bso31I	GGTCTC	1 cut(s)	674
Bsp119I	TTCGAA	1 cut(s)	991
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	370, 505, 718, 1049
BspACI	CCGC	4 cut(s)	48, 69, 94, 1060
BspDI	ATCGAT	1 cut(s)	86
BspEI	TCCGGA	1 cut(s)	136
BspLI	GGNNCC	3 cut(s)	141, 372, 1129
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	4 cut(s)	365, 378, 500, 726
BspQI	GCTCTTC	1 cut(s)	338
BspT104I	TTCGAA	1 cut(s)	991
BspT107I	GGYRCC	1 cut(s)	1127
BspTNI	GGTCTC	1 cut(s)	674
BsrI	ACTGG	1 cut(s)	445
BssECI	CCNNGG	2 cut(s)	924, 925
BssMI	GATC	4 cut(s)	370, 505, 718, 1049
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	926
Bst4CI	ACNGT	1 cut(s)	482
Bst6I	CTCTTC	2 cut(s)	338, 987
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	991
BstC8I	GCNNGC	3 cut(s)	153, 183, 1019
BstDEI	CTNAG	1 cut(s)	858
BstF5I	GGATG	3 cut(s)	84, 286, 1062
BstKTI	GATC	4 cut(s)	373, 508, 721, 1052
BstMAI	GTCTC	2 cut(s)	674, 688
BstMBI	GATC	4 cut(s)	370, 505, 718, 1049
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 354, 734, 1018
BstNI	CCWGG	1 cut(s)	926
BstNSI	RCATGY	2 cut(s)	155, 593
BstSCI	CCNGG	1 cut(s)	924
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	2 cut(s)	370, 718
BstYI	RGATCY	2 cut(s)	370, 718
Bsu15I	ATCGAT	1 cut(s)	86
BsuTUI	ATCGAT	1 cut(s)	86
BtrI	CACGTC	1 cut(s)	516
BtsCI	GGATG	3 cut(s)	84, 286, 1062
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	3 cut(s)	153, 183, 1019
CaiI	CAGNNNCTG	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	139
ClaI	ATCGAT	1 cut(s)	86
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	1128
CviAII	CATG	5 cut(s)	107, 152, 590, 698, 917
CviQI	GTAC	1 cut(s)	1128
DdeI	CTNAG	1 cut(s)	858
DpnI	GATC	4 cut(s)	372, 507, 720, 1051
DpnII	GATC	4 cut(s)	370, 505, 718, 1049
DraI	TTTAAA	1 cut(s)	868
Eam1104I	CTCTTC	2 cut(s)	338, 987
EarI	CTCTTC	2 cut(s)	338, 987
Eco31I	GGTCTC	1 cut(s)	674
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	72, 968
EcoRII	CCWGG	1 cut(s)	924
FaeI	CATG	5 cut(s)	110, 155, 593, 701, 920
FalI	AAGNNNNNCTT	2 cut(s)	1039, 1071
FaqI	GGGAC	1 cut(s)	1125
FatI	CATG	5 cut(s)	106, 151, 589, 697, 916
FauNDI	CATATG	2 cut(s)	799, 818
Fnu4HI	GCNGC	2 cut(s)	48, 104
FokI	GGATG	3 cut(s)	91, 293, 1049
Fsp4HI	GCNGC	2 cut(s)	48, 104
FspBI	CTAG	4 cut(s)	113, 522, 612, 846
GluI	GCNGC	2 cut(s)	48, 104
GsuI	CTGGAG	2 cut(s)	743, 802
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	144
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	110, 155, 593, 701, 920
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	4 cut(s)	26, 65, 83, 461
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	2 cut(s)	713, 1044
Hpy166II	GTNNAC	2 cut(s)	397, 595
Hpy188I	TCNGA	3 cut(s)	31, 311, 460
Hpy188III	TCNNGA	8 cut(s)	62, 125, 137, 503, 722, 781, 808, 1072
Hpy8I	GTNNAC	2 cut(s)	397, 595
Hpy99I	CGWCG	2 cut(s)	10, 160
HpyAV	CCTTC	2 cut(s)	610, 698
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4IV	ACGT	1 cut(s)	515
HpyCH4V	TGCA	8 cut(s)	16, 106, 151, 185, 589, 974, 1006, 1012
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 354, 734, 1018
HpyF3I	CTNAG	1 cut(s)	858
HpySE526I	ACGT	1 cut(s)	515
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	110, 155, 593, 701, 920
Kpn2I	TCCGGA	1 cut(s)	136
KpnI	GGTACC	1 cut(s)	1131
Kzo9I	GATC	4 cut(s)	370, 505, 718, 1049
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	1 cut(s)	783
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	1 cut(s)	1071
MaeI	CTAG	4 cut(s)	113, 522, 612, 846
MaeII	ACGT	1 cut(s)	515
MaeIII	GTNAC	2 cut(s)	451, 841
MalI	GATC	4 cut(s)	372, 507, 720, 1051
MboI	GATC	4 cut(s)	370, 505, 718, 1049
MboII	GAAGA	6 cut(s)	233, 355, 488, 507, 890, 974
MflI	RGATCY	2 cut(s)	370, 718
MluCI	AATT	7 cut(s)	285, 607, 671, 789, 826, 999, 1029
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	9 cut(s)	45, 346, 361, 624, 651, 694, 718, 767, 990
MroI	TCCGGA	1 cut(s)	136
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	4 cut(s)	606, 792, 867, 1141
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	2 cut(s)	50, 71
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	926
MvaI	CCWGG	1 cut(s)	926
MwoI	GCNNNNNNNGC	4 cut(s)	109, 354, 734, 1018
NdeI	CATATG	2 cut(s)	799, 818
NdeII	GATC	4 cut(s)	370, 505, 718, 1049
NlaIII	CATG	5 cut(s)	110, 155, 593, 701, 920
NlaIV	GGNNCC	3 cut(s)	141, 372, 1129
NmuCI	GTSAC	2 cut(s)	451, 841
NspI	RCATGY	2 cut(s)	155, 593
NspV	TTCGAA	1 cut(s)	991
PaeI	GCATGC	1 cut(s)	155
PaqCI	CACCTGC	1 cut(s)	202
PasI	CCCWGGG	1 cut(s)	925
PciSI	GCTCTTC	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	4 cut(s)	26, 65, 83, 461
PkrI	GCNGC	2 cut(s)	49, 105
PshBI	ATTAAT	2 cut(s)	606, 792
Psp6I	CCWGG	1 cut(s)	924
PspGI	CCWGG	1 cut(s)	924
PspN4I	GGNNCC	3 cut(s)	141, 372, 1129
PspPI	GGNCC	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	2 cut(s)	370, 718
RsaI	GTAC	1 cut(s)	1129
RsaNI	GTAC	1 cut(s)	1128
RseI	CAYNNNNRTG	1 cut(s)	174
SapI	GCTCTTC	1 cut(s)	338
SaqAI	TTAA	4 cut(s)	606, 792, 867, 1141
SatI	GCNGC	2 cut(s)	48, 104
Sau3AI	GATC	4 cut(s)	370, 505, 718, 1049
Sau96I	GGNCC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	926
SfaNI	GCATC	1 cut(s)	1071
SfuI	TTCGAA	1 cut(s)	991
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	2 cut(s)	628, 754
SmoI	CTYRAG	2 cut(s)	628, 754
SphI	GCATGC	1 cut(s)	155
Sse9I	AATT	7 cut(s)	285, 607, 671, 789, 826, 999, 1029
SsiI	CCGC	4 cut(s)	48, 69, 94, 1060
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	4 cut(s)	113, 522, 612, 846
StyD4I	CCNGG	1 cut(s)	924
TaaI	ACNGT	1 cut(s)	482
TaiI	ACGT	1 cut(s)	518
TaqI	TCGA	4 cut(s)	86, 158, 366, 991
TasI	AATT	7 cut(s)	285, 607, 671, 789, 826, 999, 1029
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	4 cut(s)	26, 65, 83, 461
Tru1I	TTAA	4 cut(s)	606, 792, 867, 1141
Tru9I	TTAA	4 cut(s)	606, 792, 867, 1141
TseFI	GTSAC	2 cut(s)	451, 841
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	2 cut(s)	451, 841
TspDTI	ATGAA	2 cut(s)	420, 747
VpaK11BI	GGWCC	1 cut(s)	139
VspI	ATTAAT	2 cut(s)	606, 792
XapI	RAATTY	1 cut(s)	671
XceI	RCATGY	2 cut(s)	155, 593
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	4 cut(s)	113, 522, 612, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.