Rorug03G0134000

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004239
Physical Location & Seq
Forward (+)
10960940 .. 10961359
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0134000.1

Sequence Viewer

Length: 420 bp
ATGATAACTCTCCCCCGTGGAACCCTAGCAGCGCCGACTGGAGGCGCAGAGCATGAAGACGGCGGTCCTTGCTGCCCTCATATAGCGCGCCAGACTCGCTCCGGCGTCAGCTTTCTCCCTACGGTCTTTTTATGGCCGGTCTTGGCTTCGATTCTAATCGGACGTATCCAATTTCTTACTGCAGATCCGATTCTGAGGGAGAAGGATTTAGCTGATGAGTGCTTGACCTTTTGGGATGACGGTGGTGGGACGACATATGCTATTTCGGTGTGGCATCCCGACAATTTGGCTAGACAGCGGAGTGTTGATGTTGGTGGAATCGATATGTATATCCCTGGTTTTGATTCCTCGACTGCCGAGCTTAGGTTGCGACTGTCGGGTCGTGGTGGCAAAGACGACCTAGTTTGGATGGAAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

139

Amino Acids

15.13

Weight (kDa)

4.88

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 378
AccII CGCG 1 cut(s) 88
AciI CCGC 2 cut(s) 63, 298
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 41, 363
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 3 cut(s) 111, 212, 361
AluI AGCT 3 cut(s) 111, 212, 361
AlwI GGATC 1 cut(s) 179
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 29, 72
AspLEI GCGC 4 cut(s) 34, 47, 88, 90
AspS9I GGNCC 1 cut(s) 65
AvaII GGWCC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 41, 59
BccI CCATC 1 cut(s) 403
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 336
BciVI GTATCC 1 cut(s) 176
BfaI CTAG 4 cut(s) 26, 291, 401, 418
BfmI CTRYAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 35
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 2 cut(s) 30, 73
BlsI GCNGC 2 cut(s) 31, 74
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 283
BoxI GACNNNNGTC 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 362
Bsa29I ATCGAT 1 cut(s) 321
BsaBI GATNNNNATC 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 16, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 363
Bse118I RCCGGY 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 155
BseBI CCWGG 1 cut(s) 336
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 16, 334
BseGI GGATG 3 cut(s) 241, 274, 414
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 2 cut(s) 41, 363
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 43
BsePI GCGCGC 1 cut(s) 86
BseXI GCAGC 2 cut(s) 41, 59
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 136
BshVI ATCGAT 1 cut(s) 321
BsiSI CCGG 2 cut(s) 102, 137
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 2 cut(s) 41, 363
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 2 cut(s) 63, 298
BspANI GGCC 1 cut(s) 136
BspCNI CTCAG 1 cut(s) 186
BspDI ATCGAT 1 cut(s) 321
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 22
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 136
BsrI ACTGG 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 16, 334
BssHII GCGCGC 1 cut(s) 86
BssMI GATC 1 cut(s) 184
BssNI GRCGYC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 3 cut(s) 124, 242, 375
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 194, 362
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 3 cut(s) 241, 274, 414
BstFNI CGCG 1 cut(s) 88
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 4 cut(s) 34, 47, 88, 90
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 3 cut(s) 69, 96, 367
BstNI CCWGG 1 cut(s) 336
BstPAI GACNNNNGTC 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 180
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 41, 59
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 321
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 1 cut(s) 136
BsuTUI ATCGAT 1 cut(s) 321
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 3 cut(s) 241, 274, 414
Cac8I GCNNGC 1 cut(s) 88
CfoI GCGC 4 cut(s) 34, 47, 88, 90
Cfr10I RCCGGY 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 65
ClaI ATCGAT 1 cut(s) 321
CseI GACGC 1 cut(s) 94
CviAII CATG 1 cut(s) 53
CviJI RGCY 6 cut(s) 111, 136, 146, 212, 290, 361
CviKI_1 RGCY 6 cut(s) 111, 136, 146, 212, 290, 361
DdeI CTNAG 2 cut(s) 194, 362
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
DrdI GACNNNNNNGTC 1 cut(s) 378
DseDI GACNNNNNNGTC 1 cut(s) 378
EaeI YGGCCR 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 1 cut(s) 56
FaiI YATR 8 cut(s) 54, 81, 83, 133, 256, 258, 326, 330
FaqI GGGAC 1 cut(s) 262
FatI CATG 1 cut(s) 52
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 30, 73
FokI GGATG 2 cut(s) 248, 261
Fsp4HI GCNGC 2 cut(s) 30, 73
FspBI CTAG 4 cut(s) 26, 291, 401, 418
GlaI GCGC 4 cut(s) 33, 46, 87, 89
GluI GCNGC 2 cut(s) 30, 73
GsuI CTGGAG 1 cut(s) 60
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 1 cut(s) 136
HapII CCGG 2 cut(s) 102, 137
HgaI GACGC 1 cut(s) 94
HhaI GCGC 4 cut(s) 34, 47, 88, 90
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 4 cut(s) 32, 45, 86, 88
HinP1I GCGC 4 cut(s) 32, 45, 86, 88
HinfI GANTC 5 cut(s) 94, 151, 190, 318, 344
HpaII CCGG 2 cut(s) 102, 137
Hpy188I TCNGA 3 cut(s) 161, 189, 195
Hpy188III TCNNGA 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 3 cut(s) 124, 242, 375
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 96, 367
HpyF3I CTNAG 2 cut(s) 194, 362
HpySE526I ACGT 1 cut(s) 163
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 4 cut(s) 32, 45, 86, 88
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 6 cut(s) 24, 104, 115, 150, 321, 348
Lsp1109I GCAGC 2 cut(s) 41, 59
LweI GCATC 1 cut(s) 283
MaeI CTAG 4 cut(s) 26, 291, 401, 418
MaeII ACGT 1 cut(s) 163
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 1 cut(s) 68
MflI RGATCY 1 cut(s) 184
MluCI AATT 2 cut(s) 170, 283
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 4 cut(s) 35, 87, 189, 358
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 2 cut(s) 102, 137
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 3 cut(s) 69, 96, 367
NdeI CATATG 1 cut(s) 256
NdeII GATC 1 cut(s) 184
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 1 cut(s) 22
NmeAIII GCCGAG 1 cut(s) 382
PauI GCGCGC 1 cut(s) 86
PfeI GAWTC 4 cut(s) 151, 190, 318, 344
PkrI GCNGC 2 cut(s) 31, 74
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PshAI GACNNNNGTC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 65
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 184
PteI GCGCGC 1 cut(s) 86
SatI GCNGC 2 cut(s) 30, 73
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 336
SetI ASST 8 cut(s) 113, 166, 214, 230, 363, 368, 402, 419
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 65
Sse9I AATT 2 cut(s) 170, 283
SsiI CCGC 2 cut(s) 63, 298
SspMI CTAG 4 cut(s) 26, 291, 401, 418
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 3 cut(s) 124, 242, 375
TaiI ACGT 1 cut(s) 166
TaqI TCGA 3 cut(s) 149, 321, 350
TasI AATT 2 cut(s) 170, 283
TfiI GAWTC 4 cut(s) 151, 190, 318, 344
TseI GCWGC 2 cut(s) 29, 72
TspDTI ATGAA 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 65
XspI CTAG 4 cut(s) 26, 291, 401, 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.