Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004239

Physical Location & Seq

Genomic Coordinates Forward (+)

10978343 .. 10979784

Gene Structure 1442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0134100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAGCAAGCACGGTACTGGATGTGGGCAAAGCGCAAGCACAGTAGTCTGATGAGTGCTTCTCATGAAGTTCAGGTGCCTTCCCATGACGAATCGTCGTGGGAAGAACAAGCTTTTGCAGAAGATGCAGCGGGGCCTCTCGGAGGTTGCATATGGCCACCGAGATCTTATTCCTGCAGCTTCTGCAGGAGAGAGTTTCGTTCGGCTCAAGCTCTTGGCGGCCACATGAATGTCCACAGGAGAGACAGAGCTAGACTCAAGCAGTCTCCCAATAATGACCAAAATGTCGAAACTGCCCATCATCATCAGAATCATCAGGATATCTCTGTCCAAATCAATCCCTTCTCATCATCTCTGGGCACTTTTCATCAATACCCATCTCATCATCAAGTTTGTGCCTTGGTTTATAACCCTAATAACCCTAGTTCAGATCCTCCCTCATCGCCTTCTAGGGTTTCGACTCAATTACCAGGTAAAGATCAAAATTGTGGTCAAGAGCAAATTACCTTGAATATCCCAACTTCTAGGTCATCCTCTGTATCATCTCCTCCGTCCAGGTCAATCTTGACCGCAAATAGATATTATAATAACTCTGTTGCAAGAAAGACTGAAGCTGCAGAGAAGATCTCGAGAATTGTGGAATCTGGGTCATGTAGGGCTAATAAGGGTGCTGATTATGTTACAACTGATTTGTCTGTGAGTTTGAATTTGGTCGTCCGCTGTGCTCGTCCATCTGTGTCAGCTGGTGGTGATGAAAATGAAGCTATCATTAGTTGCAAGAGAAGAAGAATAATGGAGGAGAAGCAATCATCCAAAGATTCTTTACCTCTTTTCCTAAAATCGGAGGGTTTTGAAGTACTTAGCCGCCCCAGCTCCATTGAAGAGTTGGATCTTGAGCTCAGGCTCGGAGACCGGCCTAAGGTAATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syntaxin-6_N

Protein Analysis

310

Amino Acids

34.59

Weight (kDa)

8.6

Isoelectric Point (pI)

70.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004239)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710
malus_domestica	MD12G1036300.v1.1 MD14G1023100.v1.1
prunus_persica	Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1
pyrus_communis	pycom14g02200
rosa_chinensis	RchiOBHm_Chr3g0473681
rosa_laevigata	RLG00000023994
rosa_multiflora	Rmu_sc0003069.1_g000003 Rmu_sc0004984.1_g000006 Rmu_sc0005978.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407950
rosa_rugosa	Rorug03G0133900 Rorug03G0133900 Rorug03G0134000 Rorug03G0134100 Rorug03G0134200
rosa_samantha	Rh3AG185500 Rh3BG213500 Rh3CG210200 Rh3DG209300
rosa_wichuraiana	Rw0G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	408, 585
AasI	GACNNNNNNGTC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	5 cut(s)	131, 219, 570, 718, 865
AclWI	GGATC	2 cut(s)	425, 897
AcoI	YGGCCR	2 cut(s)	155, 220
AcsI	RAATTY	1 cut(s)	706
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	2 cut(s)	17, 858
AfiI	CCNNNNNNNGG	3 cut(s)	143, 841, 919
AgsI	TTSAA	4 cut(s)	511, 706, 854, 881
AhdI	GACNNNNNGTC	1 cut(s)	94
AjnI	CCWGG	2 cut(s)	469, 554
AluBI	AGCT	9 cut(s)	113, 180, 212, 251, 614, 743, 764, 873, 898
AluI	AGCT	9 cut(s)	113, 180, 212, 251, 614, 743, 764, 873, 898
Alw21I	GWGCWC	2 cut(s)	727, 900
Alw26I	GTCTC	3 cut(s)	237, 270, 903
AlwI	GGATC	2 cut(s)	425, 897
AlwNI	CAGNNNCTG	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	628
AoxI	GGCC	4 cut(s)	134, 155, 220, 914
ApeKI	GCWGC	3 cut(s)	128, 177, 614
ApoI	RAATTY	1 cut(s)	706
ArsI	GACNNNNNNTTYG	2 cut(s)	475, 507
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	761
AvaI	CYCGRG	1 cut(s)	628
AxyI	CCTNAGG	1 cut(s)	918
BaeGI	GKGCMC	1 cut(s)	362
BalI	TGGCCA	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	900
Bbv12I	GWGCWC	2 cut(s)	727, 900
BbvI	GCAGC	3 cut(s)	140, 189, 601
BccI	CCATC	3 cut(s)	306, 385, 739
BciT130I	CCWGG	2 cut(s)	471, 556
BcoDI	GTCTC	3 cut(s)	237, 270, 903
BfaI	CTAG	4 cut(s)	252, 423, 450, 525
BfmI	CTRYAG	3 cut(s)	175, 184, 615
BglII	AGATCT	2 cut(s)	164, 624
BisI	GCNGC	5 cut(s)	129, 178, 220, 615, 865
BlsI	GCNGC	5 cut(s)	130, 179, 221, 616, 866
BmcAI	AGTACT	1 cut(s)	858
Bme1390I	CCNGG	2 cut(s)	471, 556
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	78, 135
BmrFI	CCNGG	2 cut(s)	471, 556
BmsI	GCATC	1 cut(s)	115
BplI	GAGNNNNNCTC	6 cut(s)	46, 78, 240, 272, 611, 643
Bpu10I	CCTNAGC	1 cut(s)	899
BpuEI	CTTGAG	3 cut(s)	192, 242, 914
BsaI	GGTCTC	1 cut(s)	903
BsaJI	CCNNGG	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 841, 919
Bse118I	RCCGGY	1 cut(s)	912
Bse1I	ACTGG	1 cut(s)	23
Bse21I	CCTNAGG	1 cut(s)	918
BseBI	CCWGG	2 cut(s)	471, 556
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	3 cut(s)	27, 530, 809
BseLI	CCNNNNNNNGG	3 cut(s)	143, 841, 919
BseMII	CTCAG	1 cut(s)	913
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	2 cut(s)	537, 812
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	140, 189, 601
BseYI	CCCAGC	1 cut(s)	869
BshFI	GGCC	4 cut(s)	136, 157, 222, 916
BshNI	GGYRCC	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	727, 900
BsiHKCI	CYCGRG	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	913
BslI	CCNNNNNNNGG	3 cut(s)	143, 841, 919
BsmAI	GTCTC	3 cut(s)	237, 270, 903
BsnI	GGCC	4 cut(s)	136, 157, 222, 916
Bso31I	GGTCTC	1 cut(s)	903
BsoBI	CYCGRG	1 cut(s)	628
Bsp1286I	GDGCHC	3 cut(s)	362, 727, 900
Bsp143I	GATC	5 cut(s)	164, 430, 478, 624, 889
BspACI	CCGC	5 cut(s)	131, 219, 570, 718, 865
BspANI	GGCC	4 cut(s)	136, 157, 222, 916
BspCNI	CTCAG	1 cut(s)	912
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	78, 135
BspMAI	CTGCAG	3 cut(s)	179, 188, 619
BspPI	GGATC	2 cut(s)	425, 897
BspT107I	GGYRCC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	903
BsrFI	RCCGGY	1 cut(s)	912
BsrI	ACTGG	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	912
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	5 cut(s)	164, 430, 478, 624, 889
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	2 cut(s)	471, 556
Bst4CI	ACNGT	2 cut(s)	15, 44
Bst6I	CTCTTC	1 cut(s)	876
BstAPI	GCANNNNNTGC	2 cut(s)	125, 183
BstC8I	GCNNGC	2 cut(s)	9, 38
BstDEI	CTNAG	3 cut(s)	860, 899, 918
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	3 cut(s)	27, 530, 809
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	5 cut(s)	167, 433, 481, 627, 892
BstMAI	GTCTC	3 cut(s)	237, 270, 903
BstMBI	GATC	5 cut(s)	164, 430, 478, 624, 889
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 183, 870
BstNI	CCWGG	2 cut(s)	471, 556
BstSCI	CCNGG	2 cut(s)	469, 554
BstSFI	CTRYAG	3 cut(s)	175, 184, 615
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	3 cut(s)	140, 189, 601
BstX2I	RGATCY	4 cut(s)	164, 430, 624, 889
BstYI	RGATCY	4 cut(s)	164, 430, 624, 889
Bsu36I	CCTNAGG	1 cut(s)	918
BsuRI	GGCC	4 cut(s)	136, 157, 222, 916
BtgZI	GCGATG	1 cut(s)	426
BtsCI	GGATG	3 cut(s)	27, 530, 809
Cac8I	GCNNGC	2 cut(s)	9, 38
CaiI	CAGNNNCTG	1 cut(s)	183
CciI	TCATGA	1 cut(s)	64
CfoI	GCGC	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	912
Cfr13I	GGNCC	1 cut(s)	134
CsiI	ACCWGGT	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	16, 857
CviAII	CATG	4 cut(s)	65, 86, 226, 651
CviQI	GTAC	2 cut(s)	16, 857
DdeI	CTNAG	3 cut(s)	860, 899, 918
DpnI	GATC	5 cut(s)	166, 432, 480, 626, 891
DpnII	GATC	5 cut(s)	164, 430, 478, 624, 889
DrdI	GACNNNNNNGTC	1 cut(s)	284
DriI	GACNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	2 cut(s)	155, 220
Eam1104I	CTCTTC	1 cut(s)	876
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	876
Ecl136II	GAGCTC	1 cut(s)	898
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	900
Eco31I	GGTCTC	1 cut(s)	903
Eco32I	GATATC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	898
Eco57I	CTGAAG	1 cut(s)	630
Eco81I	CCTNAGG	1 cut(s)	918
Eco88I	CYCGRG	1 cut(s)	628
EcoICRI	GAGCTC	1 cut(s)	898
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	469, 554
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	900
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	4 cut(s)	68, 89, 229, 654
FaiI	YATR	9 cut(s)	66, 87, 152, 154, 227, 408, 585, 652, 678
FatI	CATG	4 cut(s)	64, 85, 225, 650
FauI	CCCGC	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	152
Fnu4HI	GCNGC	5 cut(s)	129, 178, 220, 615, 865
FokI	GGATG	3 cut(s)	34, 517, 796
FriOI	GRGCYC	1 cut(s)	900
Fsp4HI	GCNGC	5 cut(s)	129, 178, 220, 615, 865
FspBI	CTAG	4 cut(s)	252, 423, 450, 525
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	5 cut(s)	129, 178, 220, 615, 865
GsaI	CCCAGC	1 cut(s)	873
HaeIII	GGCC	4 cut(s)	136, 157, 222, 916
HapII	CCGG	1 cut(s)	913
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	4 cut(s)	68, 89, 229, 654
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	6 cut(s)	92, 255, 310, 460, 641, 818
HpaII	CCGG	1 cut(s)	913
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	6 cut(s)	51, 143, 309, 430, 844, 908
Hpy188III	TCNNGA	7 cut(s)	65, 317, 494, 565, 628, 630, 893
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	3 cut(s)	90, 352, 456
HpyCH4III	ACNGT	2 cut(s)	15, 44
HpyCH4V	TGCA	8 cut(s)	119, 128, 150, 177, 186, 599, 617, 777
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 183, 870
HpyF3I	CTNAG	3 cut(s)	860, 899, 918
Hsp92II	CATG	4 cut(s)	68, 89, 229, 654
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	5 cut(s)	164, 430, 478, 624, 889
LmnI	GCTCC	2 cut(s)	4, 878
Lsp1109I	GCAGC	3 cut(s)	140, 189, 601
LweI	GCATC	1 cut(s)	115
MabI	ACCWGGT	1 cut(s)	469
MaeI	CTAG	4 cut(s)	252, 423, 450, 525
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	5 cut(s)	166, 432, 480, 626, 891
MboI	GATC	5 cut(s)	164, 430, 478, 624, 889
MboII	GAAGA	6 cut(s)	116, 134, 634, 795, 798, 893
MflI	RGATCY	4 cut(s)	164, 430, 624, 889
MhlI	GDGCHC	3 cut(s)	362, 727, 900
MlsI	TGGCCA	1 cut(s)	157
MluCI	AATT	5 cut(s)	464, 484, 501, 633, 706
MluNI	TGGCCA	1 cut(s)	157
MlyI	GAGTC	2 cut(s)	249, 454
MmeI	TCCRAC	1 cut(s)	867
MnlI	CCTC	9 cut(s)	137, 147, 444, 448, 544, 558, 790, 837, 838
Mox20I	TGGCCA	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	157
MslI	CAYNNNNRTG	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	157
MspA1I	CMGCKG	3 cut(s)	131, 720, 743
MspI	CCGG	1 cut(s)	913
MspR9I	CCNGG	2 cut(s)	471, 556
MvaI	CCWGG	2 cut(s)	471, 556
MwoI	GCNNNNNNNGC	3 cut(s)	125, 183, 870
NdeI	CATATG	1 cut(s)	152
NdeII	GATC	5 cut(s)	164, 430, 478, 624, 889
NlaIII	CATG	4 cut(s)	68, 89, 229, 654
NlaIV	GGNNCC	2 cut(s)	78, 135
PaeR7I	CTCGAG	1 cut(s)	628
PagI	TCATGA	1 cut(s)	64
PfeI	GAWTC	4 cut(s)	92, 310, 641, 818
PkrI	GCNGC	5 cut(s)	130, 179, 221, 616, 866
PleI	GAGTC	2 cut(s)	249, 454
PpsI	GAGTC	2 cut(s)	249, 454
PsiI	TTATAA	2 cut(s)	408, 585
Psp124BI	GAGCTC	1 cut(s)	900
Psp6I	CCWGG	2 cut(s)	469, 554
PspFI	CCCAGC	1 cut(s)	869
PspGI	CCWGG	2 cut(s)	469, 554
PspN4I	GGNNCC	2 cut(s)	78, 135
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	3 cut(s)	179, 188, 619
PstNI	CAGNNNCTG	1 cut(s)	183
PsuI	RGATCY	4 cut(s)	164, 430, 624, 889
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	2 cut(s)	17, 858
RsaNI	GTAC	2 cut(s)	16, 857
RseI	CAYNNNNRTG	1 cut(s)	228
SacI	GAGCTC	1 cut(s)	900
SatI	GCNGC	5 cut(s)	129, 178, 220, 615, 865
Sau3AI	GATC	5 cut(s)	164, 430, 478, 624, 889
Sau96I	GGNCC	1 cut(s)	134
ScaI	AGTACT	1 cut(s)	858
SchI	GAGTC	2 cut(s)	249, 454
ScrFI	CCNGG	2 cut(s)	471, 556
SduI	GDGCHC	3 cut(s)	362, 727, 900
SexAI	ACCWGGT	1 cut(s)	469
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	3 cut(s)	175, 184, 615
Sfr274I	CTCGAG	1 cut(s)	628
SlaI	CTCGAG	1 cut(s)	628
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	4 cut(s)	207, 257, 628, 893
SmoI	CTYRAG	4 cut(s)	207, 257, 628, 893
Sse9I	AATT	5 cut(s)	464, 484, 501, 633, 706
SsiI	CCGC	5 cut(s)	131, 219, 570, 718, 865
SspMI	CTAG	4 cut(s)	252, 423, 450, 525
SstI	GAGCTC	1 cut(s)	900
StyD4I	CCNGG	2 cut(s)	469, 554
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	15, 44
TaqI	TCGA	3 cut(s)	288, 458, 629
TasI	AATT	5 cut(s)	464, 484, 501, 633, 706
TatI	WGTACW	1 cut(s)	856
TauI	GCSGC	2 cut(s)	222, 867
TfiI	GAWTC	4 cut(s)	92, 310, 641, 818
TseI	GCWGC	3 cut(s)	128, 177, 614
TspDTI	ATGAA	5 cut(s)	81, 242, 356, 768, 774
TspGWI	ACGGA	1 cut(s)	540
XagI	CCTNNNNNAGG	1 cut(s)	141
XapI	RAATTY	1 cut(s)	706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XhoI	CTCGAG	1 cut(s)	628
XspI	CTAG	4 cut(s)	252, 423, 450, 525
ZrmI	AGTACT	1 cut(s)	858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.