RLG00000023994

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0004239
Physical Location & Seq
Reverse (-)
30751180 .. 30754239
3060 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023994

Sequence Viewer

Length: 1161 bp
ATGGCGTCGGGTTTGCACCAATGGGAATCAGACCCTCTTTTTTCAGCTGCTGAAGTTGTTCAAGATTCCGCTGACCGGATGGAATCGACTTTCCGATTTCTGCTTCATGAGCTCAGTCTTGTTCAAAATGACTTTCCGGACCCAAAGTTGCACGCGTCGATAGATTATCATAAACGTGATCTTGCAACGACACTTGAAACAGCAAAGTGGCAGTTGGAAGATTTTGAAAGAGCAGTCAGCTTTTCAGCTATGACAGGCAAGTCCCAGATACAAGGGGATGTAATTTTAAGGCACAAGCAGTTTATCAGAGCTATTAGGGAACAGATAGCTTATGTGGAGAAGAGCTTGGAGGGCACATCAGTAGGAGATCCAATGAGAAAGACAGAATGGATCAACTTGAATGAACAAGACAGAGATGGCTTGGCATTGTTTCTTTCTGGGGGAAATGCCACAGAGCACTCTGATTCATATGATGGAGAAGACAGTAGTATGTTGAGAAGATTTCTTGATCCAACAACATCGTCCAGTGCCAAAGACAGTACTTCTGGGATTGTGGAGCAGAAAAGCAGAGAAATTGAGAACAGGAATGGAGTAGTGCATGTGGACCACAGTATTGACTCTAGGAAGGAGAACAACTTGAGGAAAGTTAGTTCTTATCCTAATACAAGGTCAGGTTTTGAATTTACAGAGACCTCTTGTAACAGATATGGTGAAGGTGGTAGTTGGGATCTGGAGGCTAATGAAGCCAAACCAGAAAGCTTCTTATCCAAGAACAAGTTGAGAGGTGTCTGGAGCAGAATAAATGCATATGGGTTCTTGACCAACATATGGACTCTTTATGGGAGTAGGGTCACTAGGAATTACACAAAGAGATTTAAAGATGGAGAAGAACAAAGTCATTCCCCATCATCTGCTGATGTTTCTCATGCTCCCCAGGGTCATCAGGGGACGTGGTTAGCCAATGGGTATAGAAATTTTGAAGTATTATCGGTGCAGGTTCGAACAAAGATTATGCACTTGCAGACCTGGCTTGGTGTAATTAGGGCAAGATACCAAGGATCACCTTATCGCATCCAAGTCCAGAGGCATGCTGTTCAGTTGGTTTTTATAATAGTATTTGGACTCATTATTTTAGGTACACTGGTGTCTCAACTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

387

Amino Acids

43.83

Weight (kDa)

6.37

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STX6_10_61_N PF09177 11 - 111 2.3e-16 Syntaxin 6/10/61, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1109
AasI GACNNNNNNGTC 1 cut(s) 259
Acc36I ACCTGC 1 cut(s) 985
AccB7I CCANNNNNTGG 1 cut(s) 828
AccII CGCG 1 cut(s) 155
AccIII TCCGGA 1 cut(s) 136
AciI CCGC 1 cut(s) 69
AclWI GGATC 5 cut(s) 362, 398, 503, 735, 1066
AcsI RAATTY 2 cut(s) 680, 973
AcuI CTGAAG 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 541, 1138
AfiI CCNNNNNNNGG 2 cut(s) 75, 828
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 7 cut(s) 62, 125, 197, 227, 400, 680, 980
AjiI CACGTC 1 cut(s) 951
AjnI CCWGG 2 cut(s) 933, 1025
AloI GAACNNNNNNTCC 2 cut(s) 634, 666
AluBI AGCT 8 cut(s) 47, 112, 240, 248, 311, 329, 345, 759
AluI AGCT 8 cut(s) 47, 112, 240, 248, 311, 329, 345, 759
Alw21I GWGCWC 2 cut(s) 114, 459
Alw26I GTCTC 2 cut(s) 683, 1152
AlwI GGATC 5 cut(s) 362, 398, 503, 735, 1066
AlwNI CAGNNNCTG 1 cut(s) 50
Aor13HI TCCGGA 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 2 cut(s) 680, 973
Asp700I GAANNNNTTC 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 139, 604
AsuHPI GGTGA 2 cut(s) 722, 1053
AsuII TTCGAA 1 cut(s) 1000
AvaII GGWCC 2 cut(s) 139, 604
BaeGI GKGCMC 1 cut(s) 356
BaeI ACNNNNGTAYC 2 cut(s) 1128, 1161
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 486
Bbv12I GWGCWC 2 cut(s) 114, 459
BbvI GCAGC 1 cut(s) 34
BccI CCATC 5 cut(s) 73, 410, 467, 875, 913
BciT130I CCWGG 2 cut(s) 935, 1027
BcoDI GTCTC 2 cut(s) 683, 1152
BfaI CTAG 2 cut(s) 621, 855
BfuAI ACCTGC 1 cut(s) 985
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmcAI AGTACT 1 cut(s) 541
Bme1390I CCNGG 2 cut(s) 935, 1027
Bme18I GGWCC 2 cut(s) 139, 604
BmgBI CACGTC 1 cut(s) 951
BmgT120I GGNCC 2 cut(s) 139, 604
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 2 cut(s) 935, 1027
BmsI GCATC 1 cut(s) 1080
BpiI GAAGAC 1 cut(s) 486
BpmI CTGGAG 2 cut(s) 752, 811
Bpu14I TTCGAA 1 cut(s) 1000
BpuEI CTTGAG 1 cut(s) 658
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 683
BsaJI CCNNGG 3 cut(s) 933, 934, 1054
BsaWI WCCGGW 2 cut(s) 75, 136
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 828
Bse1I ACTGG 2 cut(s) 525, 1146
BseAI TCCGGA 1 cut(s) 136
BseBI CCWGG 2 cut(s) 935, 1027
BseDI CCNNGG 3 cut(s) 933, 934, 1054
BseGI GGATG 3 cut(s) 84, 283, 1071
BseLI CCNNNNNNNGG 2 cut(s) 75, 828
BseMII CTCAG 1 cut(s) 127
BseNI ACTGG 2 cut(s) 525, 1146
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 1013
Bsh1236I CGCG 1 cut(s) 155
BsiHKAI GWGCWC 2 cut(s) 114, 459
BsiSI CCGG 2 cut(s) 76, 137
BslFI GGGAC 2 cut(s) 247, 961
BslI CCNNNNNNNGG 2 cut(s) 75, 828
BsmAI GTCTC 2 cut(s) 683, 1152
BsmFI GGGAC 2 cut(s) 247, 961
Bso31I GGTCTC 1 cut(s) 683
Bsp119I TTCGAA 1 cut(s) 1000
Bsp1286I GDGCHC 3 cut(s) 114, 356, 459
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 6 cut(s) 178, 367, 390, 508, 727, 1058
BspACI CCGC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 126
BspEI TCCGGA 1 cut(s) 136
BspFNI CGCG 1 cut(s) 155
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 985
BspPI GGATC 5 cut(s) 362, 398, 503, 735, 1066
BspQI GCTCTTC 1 cut(s) 335
BspT104I TTCGAA 1 cut(s) 1000
BspTNI GGTCTC 1 cut(s) 683
BsrI ACTGG 2 cut(s) 525, 1146
BssECI CCNNGG 3 cut(s) 933, 934, 1054
BssMI GATC 6 cut(s) 178, 367, 390, 508, 727, 1058
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 1054
Bst2UI CCWGG 2 cut(s) 935, 1027
Bst4CI ACNGT 3 cut(s) 485, 539, 611
Bst6I CTCTTC 1 cut(s) 335
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 1000
BstC8I GCNNGC 2 cut(s) 153, 1089
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 3 cut(s) 84, 283, 1071
BstFNI CGCG 1 cut(s) 155
BstKTI GATC 6 cut(s) 181, 370, 393, 511, 730, 1061
BstMAI GTCTC 2 cut(s) 683, 1152
BstMBI GATC 6 cut(s) 178, 367, 390, 508, 727, 1058
BstMWI GCNNNNNNNGC 4 cut(s) 109, 351, 743, 1027
BstNI CCWGG 2 cut(s) 935, 1027
BstNSI RCATGY 2 cut(s) 602, 1091
BstSCI CCNGG 2 cut(s) 933, 1025
BstSLI GKGCMC 1 cut(s) 356
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 2 cut(s) 367, 727
BstYI RGATCY 2 cut(s) 367, 727
BtrI CACGTC 1 cut(s) 951
BtsCI GGATG 3 cut(s) 84, 283, 1071
BtsIMutI CAGTG 2 cut(s) 532, 1139
BveI ACCTGC 1 cut(s) 985
Cac8I GCNNGC 2 cut(s) 153, 1089
CaiI CAGNNNCTG 1 cut(s) 50
CciI TCATGA 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 139, 604
CseI GACGC 1 cut(s) 144
Csp6I GTAC 2 cut(s) 540, 1137
CviAII CATG 4 cut(s) 107, 599, 926, 1088
CviQI GTAC 2 cut(s) 540, 1137
DdeI CTNAG 1 cut(s) 113
DpnI GATC 6 cut(s) 180, 369, 392, 510, 729, 1060
DpnII GATC 6 cut(s) 178, 367, 390, 508, 727, 1058
DraI TTTAAA 1 cut(s) 877
DrdI GACNNNNNNGTC 1 cut(s) 259
DseDI GACNNNNNNGTC 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Ecl136II GAGCTC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 1054
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 683
Eco47I GGWCC 2 cut(s) 139, 604
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 933, 1025
EcoT14I CCWWGG 1 cut(s) 1054
EcoT22I ATGCAT 1 cut(s) 808
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 1054
FaeI CATG 4 cut(s) 110, 602, 929, 1091
FaqI GGGAC 2 cut(s) 247, 961
FatI CATG 4 cut(s) 106, 598, 925, 1087
FauNDI CATATG 3 cut(s) 469, 808, 827
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 3 cut(s) 91, 290, 1058
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 2 cut(s) 621, 855
GluI GCNGC 1 cut(s) 48
GsuI CTGGAG 2 cut(s) 752, 811
HapII CCGG 2 cut(s) 76, 137
HgaI GACGC 1 cut(s) 144
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 110, 602, 929, 1091
HindIII AAGCTT 1 cut(s) 757
HinfI GANTC 7 cut(s) 26, 65, 83, 464, 617, 832, 1122
HpaII CCGG 2 cut(s) 76, 137
HphI GGTGA 2 cut(s) 722, 1053
Hpy166II GTNNAC 2 cut(s) 604, 1139
Hpy188I TCNGA 4 cut(s) 31, 95, 308, 463
Hpy188III TCNNGA 8 cut(s) 62, 107, 137, 506, 731, 790, 817, 1081
Hpy8I GTNNAC 2 cut(s) 604, 1139
Hpy99I CGWCG 2 cut(s) 10, 160
HpyAV CCTTC 2 cut(s) 619, 707
HpyCH4III ACNGT 3 cut(s) 485, 539, 611
HpyCH4IV ACGT 2 cut(s) 175, 950
HpyCH4V TGCA 8 cut(s) 16, 151, 185, 598, 806, 994, 1015, 1021
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 351, 743, 1027
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 2 cut(s) 175, 950
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 110, 602, 929, 1091
Kpn2I TCCGGA 1 cut(s) 136
Kzo9I GATC 6 cut(s) 178, 367, 390, 508, 727, 1058
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 3 cut(s) 556, 792, 934
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 1080
MaeI CTAG 2 cut(s) 621, 855
MaeII ACGT 2 cut(s) 175, 950
MaeIII GTNAC 2 cut(s) 698, 850
MalI GATC 6 cut(s) 180, 369, 392, 510, 729, 1060
MboI GATC 6 cut(s) 178, 367, 390, 508, 727, 1058
MboII GAAGA 5 cut(s) 230, 352, 491, 510, 899
MflI RGATCY 2 cut(s) 367, 727
MhlI GDGCHC 3 cut(s) 114, 356, 459
MluCI AATT 6 cut(s) 282, 573, 680, 859, 973, 1038
MluI ACGCGT 1 cut(s) 153
MlyI GAGTC 3 cut(s) 611, 826, 1116
MmeI TCCRAC 2 cut(s) 195, 536
MnlI CCTC 7 cut(s) 45, 343, 633, 703, 727, 776, 1077
Mph1103I ATGCAT 1 cut(s) 808
MroI TCCGGA 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 3 cut(s) 287, 876, 1159
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 2 cut(s) 47, 71
MspI CCGG 2 cut(s) 76, 137
MspR9I CCNGG 2 cut(s) 935, 1027
MvaI CCWGG 2 cut(s) 935, 1027
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 4 cut(s) 109, 351, 743, 1027
NdeI CATATG 3 cut(s) 469, 808, 827
NdeII GATC 6 cut(s) 178, 367, 390, 508, 727, 1058
NlaIII CATG 4 cut(s) 110, 602, 929, 1091
NlaIV GGNNCC 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 850
NsiI ATGCAT 1 cut(s) 808
NspI RCATGY 2 cut(s) 602, 1091
NspV TTCGAA 1 cut(s) 1000
PaeI GCATGC 1 cut(s) 1091
PagI TCATGA 1 cut(s) 106
PasI CCCWGGG 1 cut(s) 934
PciSI GCTCTTC 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 4 cut(s) 26, 65, 83, 464
PflMI CCANNNNNTGG 1 cut(s) 828
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 3 cut(s) 611, 826, 1116
PpsI GAGTC 3 cut(s) 611, 826, 1116
PsiI TTATAA 1 cut(s) 1109
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 2 cut(s) 933, 1025
PspGI CCWGG 2 cut(s) 933, 1025
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 2 cut(s) 139, 604
PstNI CAGNNNCTG 1 cut(s) 50
PsuI RGATCY 2 cut(s) 367, 727
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 2 cut(s) 541, 1138
RsaNI GTAC 2 cut(s) 540, 1137
RseI CAYNNNNRTG 1 cut(s) 174
SacI GAGCTC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 335
SaqAI TTAA 3 cut(s) 287, 876, 1159
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 6 cut(s) 178, 367, 390, 508, 727, 1058
Sau96I GGNCC 2 cut(s) 139, 604
ScaI AGTACT 1 cut(s) 541
SchI GAGTC 3 cut(s) 611, 826, 1116
ScrFI CCNGG 2 cut(s) 935, 1027
SduI GDGCHC 3 cut(s) 114, 356, 459
SfaNI GCATC 1 cut(s) 1080
SfuI TTCGAA 1 cut(s) 1000
SinI GGWCC 2 cut(s) 139, 604
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 637
SmoI CTYRAG 1 cut(s) 637
SphI GCATGC 1 cut(s) 1091
Sse9I AATT 6 cut(s) 282, 573, 680, 859, 973, 1038
SsiI CCGC 1 cut(s) 69
SspMI CTAG 2 cut(s) 621, 855
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 933, 1025
StyI CCWWGG 1 cut(s) 1054
TaaI ACNGT 3 cut(s) 485, 539, 611
TaiI ACGT 2 cut(s) 178, 953
TaqI TCGA 3 cut(s) 86, 158, 1000
TasI AATT 6 cut(s) 282, 573, 680, 859, 973, 1038
TatI WGTACW 1 cut(s) 539
TfiI GAWTC 4 cut(s) 26, 65, 83, 464
Tru1I TTAA 3 cut(s) 287, 876, 1159
Tru9I TTAA 3 cut(s) 287, 876, 1159
TscAI CASTG 2 cut(s) 532, 1146
TseFI GTSAC 1 cut(s) 850
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 850
TspDTI ATGAA 4 cut(s) 95, 417, 456, 756
TspRI CASTG 2 cut(s) 532, 1146
Van91I CCANNNNNTGG 1 cut(s) 828
VpaK11BI GGWCC 2 cut(s) 139, 604
XapI RAATTY 2 cut(s) 680, 973
XceI RCATGY 2 cut(s) 602, 1091
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 2 cut(s) 621, 855
ZrmI AGTACT 1 cut(s) 541
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.