Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004239

Physical Location & Seq

Genomic Coordinates Reverse (-)

30513575 .. 30516972

Gene Structure 3398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTTGAGAAGATTTCTTGATCCAACAACATCGTCTAGTGCGAAGGACAGTACTTCTGGCATTGTTGAGCAGAAAAGCAGAGAAATTGAGAATTTGAATAGGAATGGAGTAGTGCATGTGGAGCATAATATGGACTCTAGGAAGGAGAACAACTTGAGGAAAGTAAGTTCTTATCCTAATACAAGGTCAGGTTTTGAATTTACAGAGACCTCTTGTAACAGATATGGTGAAGGTAGTAGTTGGGATCTGGAGGCTAATGAAGCCAAACCAGAAAGCTTCTTATCCAAGAACAAGTTGAGAGGTGTCTGGAGCAGAATAAATGCATATGGGTTCTTGACCAACATATGGACTCTTTATGGGAGTAGGGTCACTAGGAATTACACAAAGAGATTTAAAGATGGAGAAGAACAAAGTCATTCCCCATCATCTGCTGATGTCTCTCATGCTCCCCAGGGTCATCAGGGGACGTGGTTAGCCAATGGGTATAGAAATTTTGAAGTATTATCGGTGCAGGTTCGAACAAAGATTATGCACTTGCAAGCCTGGCTTGGTGTAATTAGGGCAAGATACCAAAGATCACCTTATCGCATCCAAGTCCAGAGGCGTGCTGTTCAGTTGGTTATGATAATAGTATTTGGACTCATTATTTTAGGTACGCTGGTGTCTCTACTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syntaxin-6_N

Protein Analysis

225

Amino Acids

25.75

Weight (kDa)

9.99

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004239)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710
malus_domestica	MD12G1036300.v1.1 MD14G1023100.v1.1
prunus_persica	Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1
pyrus_communis	pycom14g02200
rosa_chinensis	RchiOBHm_Chr3g0473681
rosa_laevigata	RLG00000023994
rosa_multiflora	Rmu_sc0003069.1_g000003 Rmu_sc0004984.1_g000006 Rmu_sc0005978.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407950
rosa_rugosa	Rorug03G0133900 Rorug03G0133900 Rorug03G0134000 Rorug03G0134100 Rorug03G0134200
rosa_samantha	Rh3AG185500 Rh3BG213500 Rh3CG210200 Rh3DG209300
rosa_wichuraiana	Rw0G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	502
AccB7I	CCANNNNNTGG	1 cut(s)	345
AclWI	GGATC	2 cut(s)	14, 252
AcsI	RAATTY	3 cut(s)	91, 197, 490
AfaI	GTAC	2 cut(s)	52, 655
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	97, 197, 497
AjiI	CACGTC	1 cut(s)	468
AjnI	CCWGG	2 cut(s)	450, 542
AloI	GAACNNNNNNTCC	2 cut(s)	151, 183
AluBI	AGCT	1 cut(s)	276
AluI	AGCT	1 cut(s)	276
Alw26I	GTCTC	3 cut(s)	200, 442, 669
AlwI	GGATC	2 cut(s)	14, 252
ApoI	RAATTY	3 cut(s)	91, 197, 490
AsuHPI	GGTGA	2 cut(s)	239, 570
AsuII	TTCGAA	1 cut(s)	517
BaeI	ACNNNNGTAYC	2 cut(s)	645, 678
BccI	CCATC	2 cut(s)	392, 430
BciT130I	CCWGG	2 cut(s)	452, 544
BcoDI	GTCTC	3 cut(s)	200, 442, 669
BfaI	CTAG	3 cut(s)	36, 138, 372
BfuAI	ACCTGC	1 cut(s)	502
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	452, 544
BmgBI	CACGTC	1 cut(s)	468
BmrFI	CCNGG	2 cut(s)	452, 544
BmsI	GCATC	1 cut(s)	597
BpmI	CTGGAG	2 cut(s)	269, 328
Bpu14I	TTCGAA	1 cut(s)	517
BpuEI	CTTGAG	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	450, 451
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
BseBI	CCWGG	2 cut(s)	452, 544
BseDI	CCNNGG	2 cut(s)	450, 451
BseGI	GGATG	1 cut(s)	588
BseLI	CCNNNNNNNGG	1 cut(s)	345
BsgI	GTGCAG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	3 cut(s)	200, 442, 669
BsmFI	GGGAC	1 cut(s)	478
Bso31I	GGTCTC	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	517
Bsp143I	GATC	3 cut(s)	19, 244, 575
BspMI	ACCTGC	1 cut(s)	502
BspPI	GGATC	2 cut(s)	14, 252
BspT104I	TTCGAA	1 cut(s)	517
BspTNI	GGTCTC	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	450, 451
BssMI	GATC	3 cut(s)	19, 244, 575
Bst2UI	CCWGG	2 cut(s)	452, 544
Bst4CI	ACNGT	1 cut(s)	50
BstBI	TTCGAA	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	540, 606
BstF5I	GGATG	1 cut(s)	588
BstKTI	GATC	3 cut(s)	22, 247, 578
BstMAI	GTCTC	3 cut(s)	200, 442, 669
BstMBI	GATC	3 cut(s)	19, 244, 575
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 260, 544
BstNI	CCWGG	2 cut(s)	452, 544
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	450, 542
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BtrI	CACGTC	1 cut(s)	468
BtsCI	GGATG	1 cut(s)	588
BveI	ACCTGC	1 cut(s)	502
Cac8I	GCNNGC	2 cut(s)	540, 606
Csp6I	GTAC	2 cut(s)	51, 654
CviAII	CATG	2 cut(s)	116, 443
CviJI	RGCY	6 cut(s)	254, 263, 276, 476, 542, 547
CviKI_1	RGCY	6 cut(s)	254, 263, 276, 476, 542, 547
CviQI	GTAC	2 cut(s)	51, 654
DpnI	GATC	3 cut(s)	21, 246, 577
DpnII	GATC	3 cut(s)	19, 244, 575
DraI	TTTAAA	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	200
EcoRII	CCWGG	2 cut(s)	450, 542
EcoT22I	ATGCAT	1 cut(s)	325
FaeI	CATG	2 cut(s)	119, 446
FalI	AAGNNNNNCTT	4 cut(s)	531, 563, 565, 597
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	2 cut(s)	115, 442
FauNDI	CATATG	2 cut(s)	325, 344
FokI	GGATG	1 cut(s)	575
FspBI	CTAG	3 cut(s)	36, 138, 372
GsuI	CTGGAG	2 cut(s)	269, 328
Hin1II	CATG	2 cut(s)	119, 446
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	3 cut(s)	134, 349, 639
HphI	GGTGA	2 cut(s)	239, 570
Hpy188III	TCNNGA	5 cut(s)	17, 248, 307, 334, 598
HpyAV	CCTTC	3 cut(s)	37, 136, 224
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	5 cut(s)	115, 323, 511, 532, 538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 260, 544
HpySE526I	ACGT	1 cut(s)	467
Hsp92II	CATG	2 cut(s)	119, 446
Kzo9I	GATC	3 cut(s)	19, 244, 575
LmnI	GCTCC	3 cut(s)	121, 309, 451
LweI	GCATC	1 cut(s)	597
MaeI	CTAG	3 cut(s)	36, 138, 372
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	2 cut(s)	215, 367
MalI	GATC	3 cut(s)	21, 246, 577
MboI	GATC	3 cut(s)	19, 244, 575
MboII	GAAGA	2 cut(s)	21, 416
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	6 cut(s)	84, 91, 197, 376, 490, 555
MlyI	GAGTC	3 cut(s)	128, 343, 633
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	5 cut(s)	150, 220, 244, 293, 594
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	2 cut(s)	393, 676
MspR9I	CCNGG	2 cut(s)	452, 544
MvaI	CCWGG	2 cut(s)	452, 544
MwoI	GCNNNNNNNGC	3 cut(s)	121, 260, 544
NdeI	CATATG	2 cut(s)	325, 344
NdeII	GATC	3 cut(s)	19, 244, 575
NlaIII	CATG	2 cut(s)	119, 446
NmuCI	GTSAC	1 cut(s)	367
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	517
PasI	CCCWGGG	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	345
PleI	GAGTC	3 cut(s)	128, 343, 633
PpsI	GAGTC	3 cut(s)	128, 343, 633
Psp6I	CCWGG	2 cut(s)	450, 542
PspGI	CCWGG	2 cut(s)	450, 542
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	2 cut(s)	52, 655
RsaNI	GTAC	2 cut(s)	51, 654
SaqAI	TTAA	2 cut(s)	393, 676
Sau3AI	GATC	3 cut(s)	19, 244, 575
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	3 cut(s)	128, 343, 633
ScrFI	CCNGG	2 cut(s)	452, 544
SfaNI	GCATC	1 cut(s)	597
SfuI	TTCGAA	1 cut(s)	517
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	6 cut(s)	84, 91, 197, 376, 490, 555
SspMI	CTAG	3 cut(s)	36, 138, 372
StyD4I	CCNGG	2 cut(s)	450, 542
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	1 cut(s)	517
TasI	AATT	6 cut(s)	84, 91, 197, 376, 490, 555
TatI	WGTACW	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	393, 676
Tru9I	TTAA	2 cut(s)	393, 676
TseFI	GTSAC	1 cut(s)	367
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	1 cut(s)	273
Van91I	CCANNNNNTGG	1 cut(s)	345
XapI	RAATTY	3 cut(s)	91, 197, 490
XceI	RCATGY	1 cut(s)	119
XspI	CTAG	3 cut(s)	36, 138, 372
ZrmI	AGTACT	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.