Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00346

Orthogroup ID

OG0004239

Physical Location & Seq

Genomic Coordinates Reverse (-)

5930 .. 9582

Gene Structure 3653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G008880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGACAGGCAAGTCCCAGATACAAGGGGATGTAATTTTAAGGCACAAGCAGTTTATCAGAGCCATTAGGGAACAAATAGCTTATGTGGAGAAGAGCTTGGAGGGGACATCAATAGGAGATCCAATGAGAAATACGGAGTGGGTCAAGTTGAATGAACAAGATAGAGATGGCTTGGCATTGTTTCTTTCGGGGGGAAATGCCACAGAGCACTCTGATTCTTATGATGGAGAAGACAGTAGTATGTTGAGAAGATTTCTTGATCCAACAACATCATCTAGTGCCAAAGACAGTACTTCTGGCATTGTTGAGCAGAAAAGCAGAGAAATTGAGAATTTGAATAGGAATGGAGTAGTGCATGTGGATCATAATATGGACTCTAGGAAGGAGAACAACTTGAGGAAAGTAAGTTCTTATCCTAATACAAGGTCAGGTTTTGAATTGACAGAGACCTCTTGTAACAGATATGGTGAAGGTGGTAGTTGGGATCTGGAGGCTAATGAAGCCAAACCAGAAAGCTTCTTATCCAAGAACAAGTTGAGAGGTGTCTGGAGCAGAATAAATGCATATGGGTTCTTGACCAACATATGGACTCTTTATGGGAGTAGGGTCACTAGGAATTACACAAAGAGATTTAAAGATGGAGAAGAACAAAGTCATTCCCCATCATCTGCTGATGTTTCTCATGCTCCCCAGGGTCATCAGGGGACGTGGTTAGCCAGTGGGTATAGAAATTTTGAAGTATTATCGGTGCAGGTTCGAACAAAGATTATGCGCTTGCAGACCTGGCTTGGTGTAATTAGGGCAAGATACCAAAGATCACCTTATCGCATCCAAGTCCAGAGGCGTGCTGTTCAGTTGGTTTTGATAATAGTATTTGGACTCATTATTTTAGGTACGCTGGTGTCTCTACTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syntaxin-6_N

Protein Analysis

305

Amino Acids

34.6

Weight (kDa)

9.44

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004239)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710
malus_domestica	MD12G1036300.v1.1 MD14G1023100.v1.1
prunus_persica	Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1
pyrus_communis	pycom14g02200
rosa_chinensis	RchiOBHm_Chr3g0473681
rosa_laevigata	RLG00000023994
rosa_multiflora	Rmu_sc0003069.1_g000003 Rmu_sc0004984.1_g000006 Rmu_sc0005978.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407950
rosa_rugosa	Rorug03G0133900 Rorug03G0133900 Rorug03G0134000 Rorug03G0134100 Rorug03G0134200
rosa_samantha	Rh3AG185500 Rh3BG213500 Rh3CG210200 Rh3DG209300
rosa_wichuraiana	Rw0G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
Acc36I	ACCTGC	1 cut(s)	742
AccB7I	CCANNNNNTGG	1 cut(s)	585
AclWI	GGATC	4 cut(s)	113, 254, 369, 492
AcsI	RAATTY	2 cut(s)	331, 730
AfaI	GTAC	2 cut(s)	292, 895
AfiI	CCNNNNNNNGG	1 cut(s)	585
AgsI	TTSAA	4 cut(s)	151, 337, 437, 737
AjiI	CACGTC	1 cut(s)	708
AjnI	CCWGG	2 cut(s)	690, 782
AloI	GAACNNNNNNTCC	2 cut(s)	391, 423
AluBI	AGCT	3 cut(s)	80, 96, 516
AluI	AGCT	3 cut(s)	80, 96, 516
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	440, 909
AlwI	GGATC	4 cut(s)	113, 254, 369, 492
ApoI	RAATTY	2 cut(s)	331, 730
AspLEI	GCGC	1 cut(s)	774
AsuHPI	GGTGA	2 cut(s)	479, 810
AsuII	TTCGAA	1 cut(s)	757
BaeI	ACNNNNGTAYC	2 cut(s)	885, 918
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	4 cut(s)	161, 218, 632, 670
BciT130I	CCWGG	2 cut(s)	692, 784
BcoDI	GTCTC	2 cut(s)	440, 909
BfaI	CTAG	3 cut(s)	276, 378, 612
BfuAI	ACCTGC	1 cut(s)	742
BmcAI	AGTACT	1 cut(s)	292
Bme1390I	CCNGG	2 cut(s)	692, 784
BmgBI	CACGTC	1 cut(s)	708
BmrFI	CCNGG	2 cut(s)	692, 784
BmsI	GCATC	1 cut(s)	837
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	2 cut(s)	509, 568
Bpu14I	TTCGAA	1 cut(s)	757
BpuEI	CTTGAG	1 cut(s)	415
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	690, 691
Bsc4I	CCNNNNNNNGG	1 cut(s)	585
Bse1I	ACTGG	1 cut(s)	717
BseBI	CCWGG	2 cut(s)	692, 784
BseDI	CCNNGG	2 cut(s)	690, 691
BseGI	GGATG	2 cut(s)	34, 828
BseLI	CCNNNNNNNGG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	717
BsgI	GTGCAG	1 cut(s)	770
BsiHKAI	GWGCWC	1 cut(s)	210
BslFI	GGGAC	2 cut(s)	118, 718
BslI	CCNNNNNNNGG	1 cut(s)	585
BsmAI	GTCTC	2 cut(s)	440, 909
BsmFI	GGGAC	2 cut(s)	118, 718
Bso31I	GGTCTC	1 cut(s)	440
Bsp119I	TTCGAA	1 cut(s)	757
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	5 cut(s)	118, 259, 361, 484, 815
BspMI	ACCTGC	1 cut(s)	742
BspPI	GGATC	4 cut(s)	113, 254, 369, 492
BspQI	GCTCTTC	1 cut(s)	86
BspT104I	TTCGAA	1 cut(s)	757
BspTNI	GGTCTC	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	717
BssECI	CCNNGG	2 cut(s)	690, 691
BssMI	GATC	5 cut(s)	118, 259, 361, 484, 815
Bst2UI	CCWGG	2 cut(s)	692, 784
Bst4CI	ACNGT	2 cut(s)	236, 290
Bst6I	CTCTTC	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	757
BstC8I	GCNNGC	2 cut(s)	776, 846
BstF5I	GGATG	2 cut(s)	34, 828
BstHHI	GCGC	1 cut(s)	774
BstKTI	GATC	5 cut(s)	121, 262, 364, 487, 818
BstMAI	GTCTC	2 cut(s)	440, 909
BstMBI	GATC	5 cut(s)	118, 259, 361, 484, 815
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 784
BstNI	CCWGG	2 cut(s)	692, 784
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	2 cut(s)	690, 782
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	118, 484
BstYI	RGATCY	2 cut(s)	118, 484
BtrI	CACGTC	1 cut(s)	708
BtsCI	GGATG	2 cut(s)	34, 828
BtsIMutI	CAGTG	1 cut(s)	724
BveI	ACCTGC	1 cut(s)	742
Cac8I	GCNNGC	2 cut(s)	776, 846
CfoI	GCGC	1 cut(s)	774
Csp6I	GTAC	2 cut(s)	291, 894
CviAII	CATG	2 cut(s)	356, 683
CviJI	RGCY	9 cut(s)	62, 80, 96, 171, 494, 503, 516, 716, 787
CviKI_1	RGCY	9 cut(s)	62, 80, 96, 171, 494, 503, 516, 716, 787
CviQI	GTAC	2 cut(s)	291, 894
DpnI	GATC	5 cut(s)	120, 261, 363, 486, 817
DpnII	GATC	5 cut(s)	118, 259, 361, 484, 815
DraI	TTTAAA	1 cut(s)	634
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	440
EcoRII	CCWGG	2 cut(s)	690, 782
EcoT22I	ATGCAT	1 cut(s)	565
FaeI	CATG	2 cut(s)	359, 686
FalI	AAGNNNNNCTT	2 cut(s)	805, 837
FaqI	GGGAC	2 cut(s)	118, 718
FatI	CATG	2 cut(s)	355, 682
FauNDI	CATATG	2 cut(s)	565, 584
FokI	GGATG	2 cut(s)	41, 815
FspBI	CTAG	3 cut(s)	276, 378, 612
GlaI	GCGC	1 cut(s)	773
GsuI	CTGGAG	2 cut(s)	509, 568
HhaI	GCGC	1 cut(s)	774
Hin1II	CATG	2 cut(s)	359, 686
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	4 cut(s)	215, 374, 589, 879
HphI	GGTGA	2 cut(s)	479, 810
Hpy188I	TCNGA	2 cut(s)	59, 214
Hpy188III	TCNNGA	5 cut(s)	257, 488, 547, 574, 838
HpyAV	CCTTC	2 cut(s)	376, 464
HpyCH4III	ACNGT	2 cut(s)	236, 290
HpyCH4IV	ACGT	1 cut(s)	707
HpyCH4V	TGCA	4 cut(s)	355, 563, 751, 778
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 784
HpySE526I	ACGT	1 cut(s)	707
Hsp92II	CATG	2 cut(s)	359, 686
HspAI	GCGC	1 cut(s)	772
Kzo9I	GATC	5 cut(s)	118, 259, 361, 484, 815
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	2 cut(s)	549, 691
LweI	GCATC	1 cut(s)	837
MaeI	CTAG	3 cut(s)	276, 378, 612
MaeII	ACGT	1 cut(s)	707
MaeIII	GTNAC	2 cut(s)	455, 607
MalI	GATC	5 cut(s)	120, 261, 363, 486, 817
MboI	GATC	5 cut(s)	118, 259, 361, 484, 815
MboII	GAAGA	4 cut(s)	103, 242, 261, 656
MflI	RGATCY	2 cut(s)	118, 484
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	7 cut(s)	33, 324, 331, 437, 616, 730, 795
MlyI	GAGTC	3 cut(s)	368, 583, 873
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	6 cut(s)	94, 390, 460, 484, 533, 834
Mph1103I	ATGCAT	1 cut(s)	565
MseI	TTAA	3 cut(s)	38, 633, 916
MspR9I	CCNGG	2 cut(s)	692, 784
MvaI	CCWGG	2 cut(s)	692, 784
MwoI	GCNNNNNNNGC	2 cut(s)	500, 784
NdeI	CATATG	2 cut(s)	565, 584
NdeII	GATC	5 cut(s)	118, 259, 361, 484, 815
NlaIII	CATG	2 cut(s)	359, 686
NmuCI	GTSAC	1 cut(s)	607
NsiI	ATGCAT	1 cut(s)	565
NspI	RCATGY	1 cut(s)	359
NspV	TTCGAA	1 cut(s)	757
PasI	CCCWGGG	1 cut(s)	691
PciSI	GCTCTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	215
PflMI	CCANNNNNTGG	1 cut(s)	585
PleI	GAGTC	3 cut(s)	368, 583, 873
PpsI	GAGTC	3 cut(s)	368, 583, 873
Psp6I	CCWGG	2 cut(s)	690, 782
PspGI	CCWGG	2 cut(s)	690, 782
PsuI	RGATCY	2 cut(s)	118, 484
RsaI	GTAC	2 cut(s)	292, 895
RsaNI	GTAC	2 cut(s)	291, 894
SapI	GCTCTTC	1 cut(s)	86
SaqAI	TTAA	3 cut(s)	38, 633, 916
Sau3AI	GATC	5 cut(s)	118, 259, 361, 484, 815
ScaI	AGTACT	1 cut(s)	292
SchI	GAGTC	3 cut(s)	368, 583, 873
ScrFI	CCNGG	2 cut(s)	692, 784
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	837
SfuI	TTCGAA	1 cut(s)	757
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
Sse9I	AATT	7 cut(s)	33, 324, 331, 437, 616, 730, 795
SspMI	CTAG	3 cut(s)	276, 378, 612
StyD4I	CCNGG	2 cut(s)	690, 782
TaaI	ACNGT	2 cut(s)	236, 290
TaiI	ACGT	1 cut(s)	710
TaqI	TCGA	1 cut(s)	757
TasI	AATT	7 cut(s)	33, 324, 331, 437, 616, 730, 795
TatI	WGTACW	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	3 cut(s)	38, 633, 916
Tru9I	TTAA	3 cut(s)	38, 633, 916
TscAI	CASTG	1 cut(s)	724
TseFI	GTSAC	1 cut(s)	607
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	2 cut(s)	168, 513
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	724
Van91I	CCANNNNNTGG	1 cut(s)	585
XapI	RAATTY	2 cut(s)	331, 730
XceI	RCATGY	1 cut(s)	359
XspI	CTAG	3 cut(s)	276, 378, 612
ZrmI	AGTACT	1 cut(s)	292
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.