Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004239

Physical Location & Seq

Genomic Coordinates Reverse (-)

13780959 .. 13785918

Gene Structure 4960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G110100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCGTCGAGTTTGCACCAATGGGAGTCAGACCCTCTGTTTGCAGCAGCCGAAATTGTCCAAGATTCTGCTGACAGGATGGAATCAGTTTTCCGCCTTCTGCTGCATGAGCTCAGTCTTATTCAAGGTGACTGTCCAGACCTAAAGTTACTTGTGTCGATAGATTATCATAAACGTGATCTCGCAACAACACTTGAAACAGCAAAGTGGCAGTTGGAAGATTTTGAAAGAGCAGTCAGCTTTTCAGCTACGGCAGGCAAGCCCCAACTACAGGAGGATGTAATTTCAAGGCACAATCAGTTTATCAGAGCCATTAGAGAACAAATACTTTATGTGGAGAAGAACTTGGAGGGAACATCAATTGGAGATCCCATGAGAAATACAGAGTGGGTCAACTTGAATGAACAAGATAGAGATGGGTTGGCATTGTTTCTTTCTGGGGGAAATGACACAGACCACTCTGGTTGTTATGATGTGGAGGACAACAGTATCTTGGAAAGATTTCTTGATCCAATTACATCTAGTGCTAAAGACAGTACTTCTGGGATTGTTGAGCACAAAAGCAGAGGAATTGAGAACTTGAATATGAATGGAGTAGTGCCTTTGGACCGCGCTATTGACTCGAGGAAGGAGAACAACTGGACGAAAGTTGGTTCTTATAACAGATTTGGTGAAGGTACAAGGTTGAGTTCTGAATTAACAGATTATTTTCCAGAGACATCTGGTGACAGATATGGAGGTGATGGGAGTCAGGATTTGGAGGCTAATGAAGCCAAACCTGAAAGCTTCTTTTGCAAGGACAAGTTGAGAAGGTTCTGCAGCATAACAAACGTTCTAGGGTTCTTGAATAACATAAGGACTGTTTATGGGAGTAGGGTCACTAGGAATTATACAAAGAGATTTAAAGATGGAGAAGAACAAAGTCATTCCCCATCATGTGCTGCTGATGTTTCTCATGCTGCACAGGGGCAGCGTCAGGGAACATGGTTAGCATTTGGATATAGAAATTTTAGAGAATTATGTGTTGGGGTTCGGTCAAAAGTTATGTACTTACAGTCCTGGCTTGGTGTATTTAGGGCAAGATATCAAAGATCACCTTATGACATCCAAGTTCAGTGGCATTCTGTTCAATTGGTATTGATAGTGGTGCTTACACTCATTATTCTAGGTAAACTGGTGTCCTGGCTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syntaxin-6_N

Protein Analysis

398

Amino Acids

45.02

Weight (kDa)

5.49

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004239)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710
malus_domestica	MD12G1036300.v1.1 MD14G1023100.v1.1
prunus_persica	Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1
pyrus_communis	pycom14g02200
rosa_chinensis	RchiOBHm_Chr3g0473681
rosa_laevigata	RLG00000023994
rosa_multiflora	Rmu_sc0003069.1_g000003 Rmu_sc0004984.1_g000006 Rmu_sc0005978.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407950
rosa_rugosa	Rorug03G0133900 Rorug03G0133900 Rorug03G0134000 Rorug03G0134100 Rorug03G0134200
rosa_samantha	Rh3AG185500 Rh3BG213500 Rh3CG210200 Rh3DG209300
rosa_wichuraiana	Rw0G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
AccII	CGCG	1 cut(s)	612
AciI	CCGC	2 cut(s)	94, 610
AclI	AACGTT	1 cut(s)	831
AclWI	GGATC	2 cut(s)	362, 503
AcsI	RAATTY	1 cut(s)	1006
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	538, 679, 1049
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	8 cut(s)	125, 197, 227, 288, 400, 583, 847, 1130
AjnI	CCWGG	2 cut(s)	1058, 1181
AjuI	GAANNNNNNNTTGG	2 cut(s)	1008, 1040
AluBI	AGCT	4 cut(s)	112, 240, 248, 786
AluI	AGCT	4 cut(s)	112, 240, 248, 786
Alw21I	GWGCWC	2 cut(s)	114, 558
Alw26I	GTCTC	1 cut(s)	710
AlwI	GGATC	2 cut(s)	362, 503
Ama87I	CYCGRG	1 cut(s)	622
ApeKI	GCWGC	7 cut(s)	44, 47, 103, 819, 941, 959, 970
ApoI	RAATTY	1 cut(s)	1006
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp700I	GAANNNNTTC	1 cut(s)	501
AspLEI	GCGC	1 cut(s)	614
AspS9I	GGNCC	1 cut(s)	607
AsuHPI	GGTGA	5 cut(s)	140, 683, 737, 752, 1086
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	1 cut(s)	607
BaeI	ACNNNNGTAYC	2 cut(s)	472, 505
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	2 cut(s)	114, 558
BbvI	GCAGC	7 cut(s)	56, 59, 90, 831, 928, 946, 982
BccI	CCATC	5 cut(s)	73, 410, 737, 902, 940
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	2 cut(s)	1060, 1183
BcoDI	GTCTC	1 cut(s)	710
BfaI	CTAG	4 cut(s)	522, 836, 882, 1166
BfmI	CTRYAG	2 cut(s)	269, 817
BisI	GCNGC	7 cut(s)	45, 48, 104, 820, 942, 960, 971
BlsI	GCNGC	7 cut(s)	46, 49, 105, 821, 943, 961, 972
BmcAI	AGTACT	1 cut(s)	538
Bme1390I	CCNGG	2 cut(s)	1060, 1183
Bme18I	GGWCC	1 cut(s)	607
BmeT110I	CYCGRG	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	607
BmrFI	CCNGG	2 cut(s)	1060, 1183
BsaHI	GRCGYC	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	2 cut(s)	644, 1179
BseBI	CCWGG	2 cut(s)	1060, 1183
BseGI	GGATG	3 cut(s)	84, 283, 1104
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	2 cut(s)	644, 1179
BseXI	GCAGC	7 cut(s)	56, 59, 90, 831, 928, 946, 982
BsgI	GTGCAG	1 cut(s)	945
Bsh1236I	CGCG	1 cut(s)	612
BsiHKAI	GWGCWC	2 cut(s)	114, 558
BsiHKCI	CYCGRG	1 cut(s)	622
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	710
BsmI	GAATGC	1 cut(s)	1120
BsoBI	CYCGRG	1 cut(s)	622
Bsp1286I	GDGCHC	2 cut(s)	114, 558
Bsp143I	GATC	4 cut(s)	178, 367, 508, 1091
BspACI	CCGC	2 cut(s)	94, 610
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	612
BspMAI	CTGCAG	1 cut(s)	821
BspPI	GGATC	2 cut(s)	362, 503
BsrI	ACTGG	2 cut(s)	644, 1179
BssMI	GATC	4 cut(s)	178, 367, 508, 1091
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	1060, 1183
Bst4CI	ACNGT	5 cut(s)	134, 488, 536, 862, 1056
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	256, 260, 1188
BstDEI	CTNAG	2 cut(s)	113, 1191
BstF5I	GGATG	3 cut(s)	84, 283, 1104
BstFNI	CGCG	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	4 cut(s)	181, 370, 511, 1094
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	4 cut(s)	178, 367, 508, 1091
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 770, 792
BstNI	CCWGG	2 cut(s)	1060, 1183
BstSCI	CCNGG	2 cut(s)	1058, 1181
BstSFI	CTRYAG	2 cut(s)	269, 817
BstUI	CGCG	1 cut(s)	612
BstV1I	GCAGC	7 cut(s)	56, 59, 90, 831, 928, 946, 982
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BtsCI	GGATG	3 cut(s)	84, 283, 1104
BtsIMutI	CAGTG	1 cut(s)	1121
Cac8I	GCNNGC	3 cut(s)	256, 260, 1188
CfoI	GCGC	1 cut(s)	614
Cfr13I	GGNCC	1 cut(s)	607
CseI	GACGC	1 cut(s)	962
Csp6I	GTAC	3 cut(s)	537, 678, 1048
CspCI	CAANNNNNGTGG	4 cut(s)	446, 481, 1097, 1132
CviAII	CATG	5 cut(s)	107, 373, 936, 956, 984
CviQI	GTAC	3 cut(s)	537, 678, 1048
DdeI	CTNAG	2 cut(s)	113, 1191
DpnI	GATC	4 cut(s)	180, 369, 510, 1093
DpnII	GATC	4 cut(s)	178, 367, 508, 1091
DraI	TTTAAA	1 cut(s)	904
EciI	GGCGGA	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	1085
Eco47I	GGWCC	1 cut(s)	607
Eco53kI	GAGCTC	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	622
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	1058, 1181
EcoRV	GATATC	1 cut(s)	1085
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	5 cut(s)	110, 376, 939, 959, 987
FalI	AAGNNNNNCTT	2 cut(s)	1081, 1113
FatI	CATG	5 cut(s)	106, 372, 935, 955, 983
Fnu4HI	GCNGC	7 cut(s)	45, 48, 104, 820, 942, 960, 971
FokI	GGATG	3 cut(s)	91, 290, 1091
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	7 cut(s)	45, 48, 104, 820, 942, 960, 971
FspBI	CTAG	4 cut(s)	522, 836, 882, 1166
GlaI	GCGC	1 cut(s)	613
GluI	GCNGC	7 cut(s)	45, 48, 104, 820, 942, 960, 971
HgaI	GACGC	1 cut(s)	962
HhaI	GCGC	1 cut(s)	614
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	110, 376, 939, 959, 987
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	784
HinfI	GANTC	5 cut(s)	26, 65, 83, 620, 748
HphI	GGTGA	5 cut(s)	140, 683, 737, 752, 1086
Hpy166II	GTNNAC	2 cut(s)	394, 1172
Hpy188I	TCNGA	3 cut(s)	31, 308, 694
Hpy188III	TCNNGA	5 cut(s)	137, 506, 713, 752, 844
Hpy8I	GTNNAC	2 cut(s)	394, 1172
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	107, 622, 668, 804
HpyCH4III	ACNGT	5 cut(s)	134, 488, 536, 862, 1056
HpyCH4IV	ACGT	2 cut(s)	175, 831
HpyCH4V	TGCA	6 cut(s)	16, 44, 106, 795, 819, 962
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 770, 792
HpyF3I	CTNAG	2 cut(s)	113, 1191
HpySE526I	ACGT	2 cut(s)	175, 831
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	110, 376, 939, 959, 987
HspAI	GCGC	1 cut(s)	612
Kzo9I	GATC	4 cut(s)	178, 367, 508, 1091
Lsp1109I	GCAGC	7 cut(s)	56, 59, 90, 831, 928, 946, 982
MaeI	CTAG	4 cut(s)	522, 836, 882, 1166
MaeII	ACGT	2 cut(s)	175, 831
MaeIII	GTNAC	4 cut(s)	128, 147, 725, 877
MalI	GATC	4 cut(s)	180, 369, 510, 1093
MboI	GATC	4 cut(s)	178, 367, 508, 1091
MboII	GAAGA	3 cut(s)	230, 352, 926
MfeI	CAATTG	2 cut(s)	360, 1130
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	2 cut(s)	114, 558
MlyI	GAGTC	3 cut(s)	35, 614, 757
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	8 cut(s)	45, 268, 343, 472, 560, 618, 731, 754
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	2 cut(s)	698, 903
MslI	CAYNNNNRTG	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	1060, 1183
MunI	CAATTG	2 cut(s)	360, 1130
Mva1269I	GAATGC	1 cut(s)	1120
MvaI	CCWGG	2 cut(s)	1060, 1183
MvnI	CGCG	1 cut(s)	612
MwoI	GCNNNNNNNGC	3 cut(s)	109, 770, 792
NdeII	GATC	4 cut(s)	178, 367, 508, 1091
NlaIII	CATG	5 cut(s)	110, 376, 939, 959, 987
NmuCI	GTSAC	3 cut(s)	128, 725, 877
PaeR7I	CTCGAG	1 cut(s)	622
PctI	GAATGC	1 cut(s)	1120
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	65, 83
PkrI	GCNGC	7 cut(s)	46, 49, 105, 821, 943, 961, 972
PleI	GAGTC	3 cut(s)	34, 614, 756
PpsI	GAGTC	3 cut(s)	34, 614, 756
PsiI	TTATAA	1 cut(s)	660
Psp124BI	GAGCTC	1 cut(s)	114
Psp1406I	AACGTT	1 cut(s)	831
Psp6I	CCWGG	2 cut(s)	1058, 1181
PspGI	CCWGG	2 cut(s)	1058, 1181
PspPI	GGNCC	1 cut(s)	607
PspXI	VCTCGAGB	1 cut(s)	622
PstI	CTGCAG	1 cut(s)	821
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	3 cut(s)	538, 679, 1049
RsaNI	GTAC	3 cut(s)	537, 678, 1048
RseI	CAYNNNNRTG	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	698, 903
SatI	GCNGC	7 cut(s)	45, 48, 104, 820, 942, 960, 971
Sau3AI	GATC	4 cut(s)	178, 367, 508, 1091
Sau96I	GGNCC	1 cut(s)	607
ScaI	AGTACT	1 cut(s)	538
SchI	GAGTC	3 cut(s)	35, 614, 757
ScrFI	CCNGG	2 cut(s)	1060, 1183
SduI	GDGCHC	2 cut(s)	114, 558
SfcI	CTRYAG	2 cut(s)	269, 817
Sfr274I	CTCGAG	1 cut(s)	622
SinI	GGWCC	1 cut(s)	607
SlaI	CTCGAG	1 cut(s)	622
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
SsiI	CCGC	2 cut(s)	94, 610
SspMI	CTAG	4 cut(s)	522, 836, 882, 1166
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	1058, 1181
TaaI	ACNGT	5 cut(s)	134, 488, 536, 862, 1056
TaiI	ACGT	2 cut(s)	178, 834
TaqI	TCGA	3 cut(s)	8, 158, 623
TaqII	GACCGA	1 cut(s)	1023
TatI	WGTACW	2 cut(s)	536, 1047
TfiI	GAWTC	2 cut(s)	65, 83
Tru1I	TTAA	2 cut(s)	698, 903
Tru9I	TTAA	2 cut(s)	698, 903
TscAI	CASTG	1 cut(s)	1121
TseFI	GTSAC	3 cut(s)	128, 725, 877
TseI	GCWGC	7 cut(s)	44, 47, 103, 819, 941, 959, 970
Tsp45I	GTSAC	3 cut(s)	128, 725, 877
TspDTI	ATGAA	3 cut(s)	417, 602, 783
TspRI	CASTG	1 cut(s)	1121
VpaK11BI	GGWCC	1 cut(s)	607
XapI	RAATTY	1 cut(s)	1006
XhoI	CTCGAG	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	4 cut(s)	522, 836, 882, 1166
ZrmI	AGTACT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.