Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003069.1

Orthogroup ID

OG0004239

Physical Location & Seq

Genomic Coordinates Reverse (-)

24531 .. 27525

Gene Structure 2995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003069.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atggcgtcgggtttgcaccaatgggaatcagaccctcttttttcagctgctgaagttgttcaagattccgctgaccggatggaatctactttccgctttctgctgcatgagctcagtcttgttcaaaatgactttccggacccaaagttgcacgcgtcgatagattatcataaacgtgatcttgcaacgacacttgaaacagcaaagtggcaggtggttttagtgactctgtcatgccagttggaagattttgaaagagcagtcagcttttcagctatgacaggcaagtcccagatacaaggggatgtaattttaaggcacaagcagtttatcagagccattagggaacaaatagcttatgtggagaagagcttggaggggacatcaataggagatccaatgagaaatacggagtgggtcaagttgaatgaacaagatagagatggcttggcattgtttctttcggggggaaatgccacagagcactctgattcttatgatggagaagacagtagtatgttgagaagatttcttgatccaacaacatcgtctagtgccaaagacagtacttctggcattgttgagcagaaaagcagagaaattgagaatttgaataggaatggagtagtgcatgtggaccataatatggactctaggaaggagaacaacttgaggaaagtaagttcttatcctaatacaaggtcaggttttgaattgacagagacctcttgtaacagatatggtgaaggtggtagttgggatctggaggctaatgaagccaaaccagaaagcttcttatccaagaacaagctgagaggtgtctggagcagaataaatgcgtacgggttctttatcaacatatggactctttatgggagtagggtcactaggaattacacaaagagatttaaagatggagaagaacaaagtcattccccatcatctgctgatgtttctcatgctccccagggtcatcaggggacgtggttagccaatgggtatagaaattttgtagtattatcggtgcaggttcgaacaaagattatgcgcttgcagacctggcttggtgtaattagggcaagataccaaagatcaccttatcgcatccaagtccagaggcgtgctgttcagttggttttgataatagtatttggactcattattttaggtacgctggtgtctctacttgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syntaxin-6_N

Protein Analysis

397

Amino Acids

45.1

Weight (kDa)

7.2

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004239)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710 FvH4_6g18710
malus_domestica	MD12G1036300.v1.1 MD14G1023100.v1.1
prunus_persica	Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1 Prupe.7G110100_v2.0.a1
pyrus_communis	pycom14g02200
rosa_chinensis	RchiOBHm_Chr3g0473681
rosa_laevigata	RLG00000023994
rosa_multiflora	Rmu_sc0003069.1_g000003 Rmu_sc0004984.1_g000006 Rmu_sc0005978.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407950
rosa_rugosa	Rorug03G0133900 Rorug03G0133900 Rorug03G0134000 Rorug03G0134100 Rorug03G0134200
rosa_samantha	Rh3AG185500 Rh3BG213500 Rh3CG210200 Rh3DG209300
rosa_wichuraiana	Rw0G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
AasI	GACNNNNNNGTC	1 cut(s)	286
Acc36I	ACCTGC	2 cut(s)	202, 1018
AccB7I	CCANNNNNTGG	1 cut(s)	646
AccII	CGCG	1 cut(s)	155
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	2 cut(s)	69, 94
AclWI	GGATC	3 cut(s)	389, 530, 768
AcsI	RAATTY	2 cut(s)	607, 1006
AcuI	CTGAAG	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	568, 842, 1171
AfiI	CCNNNNNNNGG	2 cut(s)	75, 646
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	7 cut(s)	62, 125, 197, 254, 427, 613, 713
AjiI	CACGTC	1 cut(s)	984
AjnI	CCWGG	2 cut(s)	966, 1058
AloI	GAACNNNNNNTCC	2 cut(s)	667, 699
AluBI	AGCT	8 cut(s)	47, 112, 267, 275, 356, 372, 792, 811
AluI	AGCT	8 cut(s)	47, 112, 267, 275, 356, 372, 792, 811
Alw21I	GWGCWC	2 cut(s)	114, 486
Alw26I	GTCTC	2 cut(s)	716, 1185
AlwI	GGATC	3 cut(s)	389, 530, 768
AlwNI	CAGNNNCTG	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	136
ApeKI	GCWGC	2 cut(s)	47, 103
ApoI	RAATTY	2 cut(s)	607, 1006
Asp700I	GAANNNNTTC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	1050
AspS9I	GGNCC	2 cut(s)	139, 637
AsuHPI	GGTGA	2 cut(s)	755, 1086
AsuII	TTCGAA	1 cut(s)	1033
AvaII	GGWCC	2 cut(s)	139, 637
BaeI	ACNNNNGTAYC	2 cut(s)	1161, 1194
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	2 cut(s)	114, 486
BbvI	GCAGC	2 cut(s)	34, 90
BccI	CCATC	5 cut(s)	73, 437, 494, 908, 946
BciT130I	CCWGG	2 cut(s)	968, 1060
BcoDI	GTCTC	2 cut(s)	716, 1185
BfaI	CTAG	3 cut(s)	552, 654, 888
BfuAI	ACCTGC	2 cut(s)	202, 1018
BisI	GCNGC	2 cut(s)	48, 104
BlsI	GCNGC	2 cut(s)	49, 105
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	2 cut(s)	968, 1060
Bme18I	GGWCC	2 cut(s)	139, 637
BmgBI	CACGTC	1 cut(s)	984
BmgT120I	GGNCC	2 cut(s)	139, 637
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	2 cut(s)	968, 1060
BmsI	GCATC	1 cut(s)	1113
BpiI	GAAGAC	1 cut(s)	513
BpmI	CTGGAG	2 cut(s)	785, 844
Bpu14I	TTCGAA	1 cut(s)	1033
BpuEI	CTTGAG	1 cut(s)	691
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	716
BsaJI	CCNNGG	2 cut(s)	966, 967
BsaWI	WCCGGW	2 cut(s)	75, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 646
Bse1I	ACTGG	1 cut(s)	238
BseAI	TCCGGA	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	968, 1060
BseDI	CCNNGG	2 cut(s)	966, 967
BseGI	GGATG	3 cut(s)	84, 310, 1104
BseLI	CCNNNNNNNGG	2 cut(s)	75, 646
BseMII	CTCAG	2 cut(s)	127, 803
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	34, 90
BsgI	GTGCAG	1 cut(s)	1046
Bsh1236I	CGCG	1 cut(s)	155
BsiHKAI	GWGCWC	2 cut(s)	114, 486
BsiSI	CCGG	2 cut(s)	76, 137
BsiWI	CGTACG	1 cut(s)	840
BslFI	GGGAC	3 cut(s)	274, 394, 994
BslI	CCNNNNNNNGG	2 cut(s)	75, 646
BsmAI	GTCTC	2 cut(s)	716, 1185
BsmFI	GGGAC	3 cut(s)	274, 394, 994
Bso31I	GGTCTC	1 cut(s)	716
Bsp119I	TTCGAA	1 cut(s)	1033
Bsp1286I	GDGCHC	2 cut(s)	114, 486
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	5 cut(s)	178, 394, 535, 760, 1091
BspACI	CCGC	2 cut(s)	69, 94
BspCNI	CTCAG	2 cut(s)	126, 804
BspEI	TCCGGA	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	141
BspMI	ACCTGC	2 cut(s)	202, 1018
BspPI	GGATC	3 cut(s)	389, 530, 768
BspQI	GCTCTTC	1 cut(s)	362
BspT104I	TTCGAA	1 cut(s)	1033
BspTNI	GGTCTC	1 cut(s)	716
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	966, 967
BssMI	GATC	5 cut(s)	178, 394, 535, 760, 1091
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	968, 1060
Bst4CI	ACNGT	2 cut(s)	512, 566
Bst6I	CTCTTC	1 cut(s)	362
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	1033
BstC8I	GCNNGC	3 cut(s)	153, 1052, 1122
BstDEI	CTNAG	2 cut(s)	113, 812
BstF5I	GGATG	3 cut(s)	84, 310, 1104
BstFNI	CGCG	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	1050
BstKTI	GATC	5 cut(s)	181, 397, 538, 763, 1094
BstMAI	GTCTC	2 cut(s)	716, 1185
BstMBI	GATC	5 cut(s)	178, 394, 535, 760, 1091
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 776, 1060
BstNI	CCWGG	2 cut(s)	968, 1060
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	2 cut(s)	966, 1058
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	34, 90
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	2 cut(s)	394, 760
BstYI	RGATCY	2 cut(s)	394, 760
BtrI	CACGTC	1 cut(s)	984
BtsCI	GGATG	3 cut(s)	84, 310, 1104
BveI	ACCTGC	2 cut(s)	202, 1018
Cac8I	GCNNGC	3 cut(s)	153, 1052, 1122
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	1 cut(s)	1050
Cfr13I	GGNCC	2 cut(s)	139, 637
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	3 cut(s)	567, 841, 1170
CviAII	CATG	4 cut(s)	107, 234, 632, 959
CviQI	GTAC	3 cut(s)	567, 841, 1170
DdeI	CTNAG	2 cut(s)	113, 812
DpnI	GATC	5 cut(s)	180, 396, 537, 762, 1093
DpnII	GATC	5 cut(s)	178, 394, 535, 760, 1091
DraI	TTTAAA	1 cut(s)	910
DrdI	GACNNNNNNGTC	1 cut(s)	286
DseDI	GACNNNNNNGTC	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	716
Eco47I	GGWCC	2 cut(s)	139, 637
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	966, 1058
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	4 cut(s)	110, 237, 635, 962
FalI	AAGNNNNNCTT	2 cut(s)	1081, 1113
FaqI	GGGAC	3 cut(s)	274, 394, 994
FatI	CATG	4 cut(s)	106, 233, 631, 958
FauNDI	CATATG	1 cut(s)	860
Fnu4HI	GCNGC	2 cut(s)	48, 104
FokI	GGATG	3 cut(s)	91, 317, 1091
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	48, 104
FspBI	CTAG	3 cut(s)	552, 654, 888
GlaI	GCGC	1 cut(s)	1049
GluI	GCNGC	2 cut(s)	48, 104
GsuI	CTGGAG	2 cut(s)	785, 844
HapII	CCGG	2 cut(s)	76, 137
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	1050
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	110, 237, 635, 962
Hin6I	GCGC	1 cut(s)	1048
HinP1I	GCGC	1 cut(s)	1048
HindIII	AAGCTT	1 cut(s)	790
HinfI	GANTC	8 cut(s)	26, 65, 83, 226, 491, 650, 865, 1155
HpaII	CCGG	2 cut(s)	76, 137
HphI	GGTGA	2 cut(s)	755, 1086
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	3 cut(s)	31, 335, 490
Hpy188III	TCNNGA	6 cut(s)	62, 137, 533, 764, 823, 1114
Hpy8I	GTNNAC	1 cut(s)	637
Hpy99I	CGWCG	2 cut(s)	10, 160
HpyAV	CCTTC	2 cut(s)	652, 740
HpyCH4III	ACNGT	2 cut(s)	512, 566
HpyCH4IV	ACGT	2 cut(s)	175, 983
HpyCH4V	TGCA	7 cut(s)	16, 106, 151, 185, 631, 1027, 1054
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 776, 1060
HpyF3I	CTNAG	2 cut(s)	113, 812
HpySE526I	ACGT	2 cut(s)	175, 983
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	110, 237, 635, 962
HspAI	GCGC	1 cut(s)	1048
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	5 cut(s)	178, 394, 535, 760, 1091
LguI	GCTCTTC	1 cut(s)	362
LmnI	GCTCC	2 cut(s)	825, 967
Lsp1109I	GCAGC	2 cut(s)	34, 90
LweI	GCATC	1 cut(s)	1113
MaeI	CTAG	3 cut(s)	552, 654, 888
MaeII	ACGT	2 cut(s)	175, 983
MaeIII	GTNAC	3 cut(s)	223, 731, 883
MalI	GATC	5 cut(s)	180, 396, 537, 762, 1093
MboI	GATC	5 cut(s)	178, 394, 535, 760, 1091
MboII	GAAGA	5 cut(s)	257, 379, 518, 537, 932
MflI	RGATCY	2 cut(s)	394, 760
MhlI	GDGCHC	2 cut(s)	114, 486
MluCI	AATT	7 cut(s)	309, 600, 607, 713, 892, 1006, 1071
MluI	ACGCGT	1 cut(s)	153
MlyI	GAGTC	4 cut(s)	220, 644, 859, 1149
MmeI	TCCRAC	2 cut(s)	222, 563
MnlI	CCTC	7 cut(s)	45, 370, 666, 736, 760, 809, 1110
MroI	TCCGGA	1 cut(s)	136
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	3 cut(s)	314, 909, 1192
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	2 cut(s)	47, 71
MspI	CCGG	2 cut(s)	76, 137
MspR9I	CCNGG	2 cut(s)	968, 1060
MvaI	CCWGG	2 cut(s)	968, 1060
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	3 cut(s)	109, 776, 1060
NdeI	CATATG	1 cut(s)	860
NdeII	GATC	5 cut(s)	178, 394, 535, 760, 1091
NlaIII	CATG	4 cut(s)	110, 237, 635, 962
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	2 cut(s)	223, 883
NspI	RCATGY	1 cut(s)	635
NspV	TTCGAA	1 cut(s)	1033
PaqCI	CACCTGC	1 cut(s)	202
PasI	CCCWGGG	1 cut(s)	967
PciSI	GCTCTTC	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	4 cut(s)	26, 65, 83, 491
Pfl23II	CGTACG	1 cut(s)	840
PflFI	GACNNNGTC	1 cut(s)	229
PflMI	CCANNNNNTGG	1 cut(s)	646
PkrI	GCNGC	2 cut(s)	49, 105
PleI	GAGTC	4 cut(s)	220, 644, 859, 1149
PpsI	GAGTC	4 cut(s)	220, 644, 859, 1149
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	966, 1058
PspGI	CCWGG	2 cut(s)	966, 1058
PspLI	CGTACG	1 cut(s)	840
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	2 cut(s)	139, 637
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	2 cut(s)	394, 760
PsyI	GACNNNGTC	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	3 cut(s)	568, 842, 1171
RsaNI	GTAC	3 cut(s)	567, 841, 1170
RseI	CAYNNNNRTG	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	3 cut(s)	314, 909, 1192
SatI	GCNGC	2 cut(s)	48, 104
Sau3AI	GATC	5 cut(s)	178, 394, 535, 760, 1091
Sau96I	GGNCC	2 cut(s)	139, 637
ScaI	AGTACT	1 cut(s)	568
SchI	GAGTC	4 cut(s)	220, 644, 859, 1149
ScrFI	CCNGG	2 cut(s)	968, 1060
SduI	GDGCHC	2 cut(s)	114, 486
SfaNI	GCATC	1 cut(s)	1113
SfuI	TTCGAA	1 cut(s)	1033
SinI	GGWCC	2 cut(s)	139, 637
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	670
SmoI	CTYRAG	1 cut(s)	670
Sse9I	AATT	7 cut(s)	309, 600, 607, 713, 892, 1006, 1071
SsiI	CCGC	2 cut(s)	69, 94
SspMI	CTAG	3 cut(s)	552, 654, 888
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	966, 1058
TaaI	ACNGT	2 cut(s)	512, 566
TaiI	ACGT	2 cut(s)	178, 986
TaqI	TCGA	2 cut(s)	158, 1033
TasI	AATT	7 cut(s)	309, 600, 607, 713, 892, 1006, 1071
TatI	WGTACW	1 cut(s)	566
TfiI	GAWTC	4 cut(s)	26, 65, 83, 491
Tru1I	TTAA	3 cut(s)	314, 909, 1192
Tru9I	TTAA	3 cut(s)	314, 909, 1192
TseFI	GTSAC	2 cut(s)	223, 883
TseI	GCWGC	2 cut(s)	47, 103
Tsp45I	GTSAC	2 cut(s)	223, 883
TspDTI	ATGAA	2 cut(s)	444, 789
TspGWI	ACGGA	1 cut(s)	425
Tth111I	GACNNNGTC	1 cut(s)	229
Van91I	CCANNNNNTGG	1 cut(s)	646
VpaK11BI	GGWCC	2 cut(s)	139, 637
XapI	RAATTY	2 cut(s)	607, 1006
XceI	RCATGY	1 cut(s)	635
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	3 cut(s)	552, 654, 888
ZrmI	AGTACT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.