RchiOBHm_Chr3g0473681

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0004239
Physical Location & Seq
Forward (+)
19463721 .. 19467504
3784 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43934

Sequence Viewer

Length: 1164 bp
ATGGCGTCGGGTTTGCACCAATGGGAATCAGACCCTCTTTTTTCAGCTGCTGAAGTTGTTCAAGATTCCGCTGACCGGATGGAATCGACTTTCCGCTTTCTGCTTCATGAGCTCAGTCTTGTTCAAAATGACTTTCCGGACCCAAAGTTGCACGCGTCGATAGATTATCATAAACGTGATCTTGCAACGACACTTGAAACAGCAAAGTGGCAGTTGGAAGATTTTGAAAGAGCAGTCAGCTTTTCAGCTATGACAGGCAAGTCCCAGATACAAGGGGATGTAATTTTAAGGCACAAGCAGTTTATCAGAGCCATCAGGGAACAAATAGCTTATGTGGAGAAGAGCTTGGAGGGGACATCAATAGGAGATCCAATGAGAAATACGGAATGGGTCAAGTTGAATGAACAAGATAGAGATGGCTTGGCATTGTTTCTTTCGGGGGGAAATGCCACAGAGCACTCTGATTCTTATGATGGAGAAGACAGTAGTATGTTGAGAAGATTTCTTGATCCAACAACATCGTCTAGTGCCAAAGACAGTACTTCTGGCATTGTTGAGCAGAAAAGCAGAGAAATTGAGAATTTTAATAGGAATGGAGTAGTGCATGTGGACCATAATATGGAATCTAGGAAGGAGAACAACTTGAGGAAAGTAAGTTCTTATCCTAATACAAGGTCAGGTTTTGAATTTACAGAGACCTCTTATAACAGATATGGTGAAGGTAGTAGTTGGGATCTGGAGGCTAATGAAGCCAAACCAGAAAGCTTCTTATCCAAGAACAAGTTGAGACGTGTCTGGAGCAGAATAAATGCATATGGGTTCTTGACCAACATATGGACTCTTTATGGGAGTAGGGTCACTAGGAATTACACAAAGAGATTTAAAGATGGAGAAGAACAAAGTCATTCCCCATCATCTGCTGATGTTTCTCATGCTCCCCAGGGTCATCAGGGGACGTGGTTAGCCAATGGGTATAGAAATTTTGAAGTATTATCGGTGCAGGTTCGAACAAAGATTATGCACTTGCAGACCTGGCTTGGTGTAATTAGGGCAAGATACCAAAGGTCACCTTATCGCATCCAAGTCCAGAGGCGTGCTGTTCAGTTGGTTTTGATAATAGTATTTGGACTCATTATTTTAGGTACGCTGGTGTCTCTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

387

Amino Acids

44.28

Weight (kDa)

6.89

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STX6_10_61_N PF09177 11 - 111 2.3e-16 Syntaxin 6/10/61, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 705
AasI GACNNNNNNGTC 1 cut(s) 259
Acc36I ACCTGC 1 cut(s) 991
AccB7I CCANNNNNTGG 2 cut(s) 619, 834
AccII CGCG 1 cut(s) 155
AccIII TCCGGA 1 cut(s) 136
AciI CCGC 2 cut(s) 69, 94
AclWI GGATC 3 cut(s) 362, 503, 741
AcsI RAATTY 3 cut(s) 580, 686, 979
AcuI CTGAAG 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 541, 1144
AfiI CCNNNNNNNGG 3 cut(s) 75, 619, 834
AflIII ACRYGT 2 cut(s) 153, 790
AgsI TTSAA 7 cut(s) 62, 125, 197, 227, 400, 686, 986
AjiI CACGTC 2 cut(s) 791, 957
AjnI CCWGG 2 cut(s) 939, 1031
AloI GAACNNNNNNTCC 2 cut(s) 640, 672
AluBI AGCT 7 cut(s) 47, 112, 240, 248, 329, 345, 765
AluI AGCT 7 cut(s) 47, 112, 240, 248, 329, 345, 765
Alw21I GWGCWC 2 cut(s) 114, 459
Alw26I GTCTC 3 cut(s) 689, 781, 1158
AlwI GGATC 3 cut(s) 362, 503, 741
AlwNI CAGNNNCTG 1 cut(s) 50
Aor13HI TCCGGA 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 3 cut(s) 580, 686, 979
Asp700I GAANNNNTTC 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 139, 610
AsuHPI GGTGA 2 cut(s) 728, 1059
AsuII TTCGAA 1 cut(s) 1006
AvaII GGWCC 2 cut(s) 139, 610
BaeI ACNNNNGTAYC 1 cut(s) 1134
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 486
Bbv12I GWGCWC 2 cut(s) 114, 459
BbvI GCAGC 1 cut(s) 34
BccI CCATC 6 cut(s) 73, 320, 410, 467, 881, 919
BciT130I CCWGG 2 cut(s) 941, 1033
BcoDI GTCTC 3 cut(s) 689, 781, 1158
BfaI CTAG 4 cut(s) 525, 627, 861, 1157
BfuAI ACCTGC 1 cut(s) 991
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmcAI AGTACT 1 cut(s) 541
Bme1390I CCNGG 2 cut(s) 941, 1033
Bme18I GGWCC 2 cut(s) 139, 610
BmgBI CACGTC 2 cut(s) 791, 957
BmgT120I GGNCC 2 cut(s) 139, 610
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 2 cut(s) 941, 1033
BmsI GCATC 1 cut(s) 1086
BpiI GAAGAC 1 cut(s) 486
BpmI CTGGAG 2 cut(s) 758, 817
Bpu14I TTCGAA 1 cut(s) 1006
BpuEI CTTGAG 1 cut(s) 664
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 689
BsaJI CCNNGG 2 cut(s) 939, 940
BsaWI WCCGGW 2 cut(s) 75, 136
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 619, 834
BseAI TCCGGA 1 cut(s) 136
BseBI CCWGG 2 cut(s) 941, 1033
BseDI CCNNGG 2 cut(s) 939, 940
BseGI GGATG 3 cut(s) 84, 283, 1077
BseLI CCNNNNNNNGG 3 cut(s) 75, 619, 834
BseMII CTCAG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 1019
Bsh1236I CGCG 1 cut(s) 155
BsiHKAI GWGCWC 2 cut(s) 114, 459
BsiSI CCGG 2 cut(s) 76, 137
BslFI GGGAC 3 cut(s) 247, 367, 967
BslI CCNNNNNNNGG 3 cut(s) 75, 619, 834
BsmAI GTCTC 3 cut(s) 689, 781, 1158
BsmBI CGTCTC 1 cut(s) 781
BsmFI GGGAC 3 cut(s) 247, 367, 967
Bso31I GGTCTC 1 cut(s) 689
Bsp119I TTCGAA 1 cut(s) 1006
Bsp1286I GDGCHC 2 cut(s) 114, 459
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 4 cut(s) 178, 367, 508, 733
BspACI CCGC 2 cut(s) 69, 94
BspCNI CTCAG 1 cut(s) 126
BspEI TCCGGA 1 cut(s) 136
BspFNI CGCG 1 cut(s) 155
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 991
BspPI GGATC 3 cut(s) 362, 503, 741
BspQI GCTCTTC 1 cut(s) 335
BspT104I TTCGAA 1 cut(s) 1006
BspTNI GGTCTC 1 cut(s) 689
BssECI CCNNGG 2 cut(s) 939, 940
BssMI GATC 4 cut(s) 178, 367, 508, 733
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 941, 1033
Bst4CI ACNGT 2 cut(s) 485, 539
Bst6I CTCTTC 1 cut(s) 335
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 1006
BstC8I GCNNGC 2 cut(s) 153, 1095
BstDEI CTNAG 1 cut(s) 113
BstEII GGTNACC 1 cut(s) 1065
BstF5I GGATG 3 cut(s) 84, 283, 1077
BstFNI CGCG 1 cut(s) 155
BstKTI GATC 4 cut(s) 181, 370, 511, 736
BstMAI GTCTC 3 cut(s) 689, 781, 1158
BstMBI GATC 4 cut(s) 178, 367, 508, 733
BstMWI GCNNNNNNNGC 3 cut(s) 109, 749, 1033
BstNI CCWGG 2 cut(s) 941, 1033
BstNSI RCATGY 1 cut(s) 608
BstPI GGTNACC 1 cut(s) 1065
BstSCI CCNGG 2 cut(s) 939, 1031
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 2 cut(s) 367, 733
BstYI RGATCY 2 cut(s) 367, 733
BtrI CACGTC 2 cut(s) 791, 957
BtsCI GGATG 3 cut(s) 84, 283, 1077
BveI ACCTGC 1 cut(s) 991
Cac8I GCNNGC 2 cut(s) 153, 1095
CaiI CAGNNNCTG 1 cut(s) 50
CciI TCATGA 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 139, 610
CseI GACGC 1 cut(s) 144
Csp6I GTAC 2 cut(s) 540, 1143
CviAII CATG 3 cut(s) 107, 605, 932
CviQI GTAC 2 cut(s) 540, 1143
DdeI CTNAG 1 cut(s) 113
DpnI GATC 4 cut(s) 180, 369, 510, 735
DpnII GATC 4 cut(s) 178, 367, 508, 733
DraI TTTAAA 1 cut(s) 883
DrdI GACNNNNNNGTC 1 cut(s) 259
DseDI GACNNNNNNGTC 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 689
Eco47I GGWCC 2 cut(s) 139, 610
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 72
Eco91I GGTNACC 1 cut(s) 1065
EcoICRI GAGCTC 1 cut(s) 112
EcoO65I GGTNACC 1 cut(s) 1065
EcoRII CCWGG 2 cut(s) 939, 1031
EcoT22I ATGCAT 1 cut(s) 814
EcoT38I GRGCYC 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 781
FaeI CATG 3 cut(s) 110, 608, 935
FalI AAGNNNNNCTT 2 cut(s) 1054, 1086
FaqI GGGAC 3 cut(s) 247, 367, 967
FatI CATG 3 cut(s) 106, 604, 931
FauNDI CATATG 2 cut(s) 814, 833
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 3 cut(s) 91, 290, 1064
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 4 cut(s) 525, 627, 861, 1157
GluI GCNGC 1 cut(s) 48
GsuI CTGGAG 2 cut(s) 758, 817
HapII CCGG 2 cut(s) 76, 137
HgaI GACGC 1 cut(s) 144
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 110, 608, 935
HindIII AAGCTT 1 cut(s) 763
HinfI GANTC 7 cut(s) 26, 65, 83, 464, 623, 838, 1128
HpaII CCGG 2 cut(s) 76, 137
HphI GGTGA 2 cut(s) 728, 1059
Hpy166II GTNNAC 1 cut(s) 610
Hpy188I TCNGA 3 cut(s) 31, 308, 463
Hpy188III TCNNGA 8 cut(s) 62, 107, 137, 506, 737, 796, 823, 1087
Hpy8I GTNNAC 1 cut(s) 610
Hpy99I CGWCG 2 cut(s) 10, 160
HpyAV CCTTC 2 cut(s) 625, 713
HpyCH4III ACNGT 2 cut(s) 485, 539
HpyCH4IV ACGT 3 cut(s) 175, 790, 956
HpyCH4V TGCA 8 cut(s) 16, 151, 185, 604, 812, 1000, 1021, 1027
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 749, 1033
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 3 cut(s) 175, 790, 956
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 110, 608, 935
Kpn2I TCCGGA 1 cut(s) 136
Kzo9I GATC 4 cut(s) 178, 367, 508, 733
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 2 cut(s) 798, 940
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 1086
MaeI CTAG 4 cut(s) 525, 627, 861, 1157
MaeII ACGT 3 cut(s) 175, 790, 956
MaeIII GTNAC 2 cut(s) 856, 1065
MalI GATC 4 cut(s) 180, 369, 510, 735
MboI GATC 4 cut(s) 178, 367, 508, 733
MboII GAAGA 5 cut(s) 230, 352, 491, 510, 905
MflI RGATCY 2 cut(s) 367, 733
MhlI GDGCHC 2 cut(s) 114, 459
MluCI AATT 7 cut(s) 282, 573, 580, 686, 865, 979, 1044
MluI ACGCGT 1 cut(s) 153
MlyI GAGTC 2 cut(s) 832, 1122
MmeI TCCRAC 2 cut(s) 195, 536
MnlI CCTC 6 cut(s) 45, 343, 639, 709, 733, 1083
Mph1103I ATGCAT 1 cut(s) 814
MroI TCCGGA 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 4 cut(s) 287, 585, 882, 1162
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 2 cut(s) 47, 71
MspI CCGG 2 cut(s) 76, 137
MspR9I CCNGG 2 cut(s) 941, 1033
MvaI CCWGG 2 cut(s) 941, 1033
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 3 cut(s) 109, 749, 1033
NdeI CATATG 2 cut(s) 814, 833
NdeII GATC 4 cut(s) 178, 367, 508, 733
NlaIII CATG 3 cut(s) 110, 608, 935
NlaIV GGNNCC 1 cut(s) 141
NmuCI GTSAC 2 cut(s) 856, 1065
NsiI ATGCAT 1 cut(s) 814
NspI RCATGY 1 cut(s) 608
NspV TTCGAA 1 cut(s) 1006
PagI TCATGA 1 cut(s) 106
PasI CCCWGGG 1 cut(s) 940
PciSI GCTCTTC 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 5 cut(s) 26, 65, 83, 464, 623
PflMI CCANNNNNTGG 2 cut(s) 619, 834
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 2 cut(s) 832, 1122
PpsI GAGTC 2 cut(s) 832, 1122
PsiI TTATAA 1 cut(s) 705
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 2 cut(s) 939, 1031
PspEI GGTNACC 1 cut(s) 1065
PspGI CCWGG 2 cut(s) 939, 1031
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 2 cut(s) 139, 610
PstNI CAGNNNCTG 1 cut(s) 50
PsuI RGATCY 2 cut(s) 367, 733
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 2 cut(s) 541, 1144
RsaNI GTAC 2 cut(s) 540, 1143
RseI CAYNNNNRTG 1 cut(s) 174
SacI GAGCTC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 335
SaqAI TTAA 4 cut(s) 287, 585, 882, 1162
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 4 cut(s) 178, 367, 508, 733
Sau96I GGNCC 2 cut(s) 139, 610
ScaI AGTACT 1 cut(s) 541
SchI GAGTC 2 cut(s) 832, 1122
ScrFI CCNGG 2 cut(s) 941, 1033
SduI GDGCHC 2 cut(s) 114, 459
SfaNI GCATC 1 cut(s) 1086
SfuI TTCGAA 1 cut(s) 1006
SinI GGWCC 2 cut(s) 139, 610
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 643
SmoI CTYRAG 1 cut(s) 643
Sse9I AATT 7 cut(s) 282, 573, 580, 686, 865, 979, 1044
SsiI CCGC 2 cut(s) 69, 94
SspMI CTAG 4 cut(s) 525, 627, 861, 1157
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 939, 1031
TaaI ACNGT 2 cut(s) 485, 539
TaiI ACGT 3 cut(s) 178, 793, 959
TaqI TCGA 3 cut(s) 86, 158, 1006
TasI AATT 7 cut(s) 282, 573, 580, 686, 865, 979, 1044
TatI WGTACW 1 cut(s) 539
TfiI GAWTC 5 cut(s) 26, 65, 83, 464, 623
Tru1I TTAA 4 cut(s) 287, 585, 882, 1162
Tru9I TTAA 4 cut(s) 287, 585, 882, 1162
TseFI GTSAC 2 cut(s) 856, 1065
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 2 cut(s) 856, 1065
TspDTI ATGAA 3 cut(s) 95, 417, 762
TspGWI ACGGA 1 cut(s) 398
Van91I CCANNNNNTGG 2 cut(s) 619, 834
VpaK11BI GGWCC 2 cut(s) 139, 610
XapI RAATTY 3 cut(s) 580, 686, 979
XceI RCATGY 1 cut(s) 608
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 4 cut(s) 525, 627, 861, 1157
ZrmI AGTACT 1 cut(s) 541
Zsp2I ATGCAT 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.