Rh3DG209300

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004239
Physical Location & Seq
Forward (+)
19367009 .. 19370913
3905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG209300.1

Sequence Viewer

Length: 1089 bp
ATGGAATCGACTTTCCGCTTTCTGCTGCATGAGCTTAGTCTTGTTCAAAATGACTTTCCGGACCCAAAGTTGCACGTGTCGATAGATTATCATAAACGTGATCTTGCAACGACACTTGAAACAGCAAAGTGGCAGTTGGAAGATTTTGAAAGAGCAGTCAGCTTTTCAGCTATGACAGGCAAGTCCCAGATACAAGGGGATGCAATTTTAAGGCACAAGCAGTTTATCAGAGCCATTAGGGAACAAATAGCTTATGTGGAGAAGAGCTTGGAGGGGACATCAATAGGAGATCCAATGAGAAATACGGAATGGGTCAAGTTGAATGAACAAGATAGAGATGGCTTGGCATTGTTTCTTTCGGGGGGAAATGCCACAGAGCACTCTGATTCTTATGATGGAGAAGACAGTAGTATGTTGAGAAGATTTCTTGATCCAACAACATCGTCTAGTGCCAAAGACAGTACTTCTGGCATTGTTGAGCAGAAAAGCAGAGAAATTGAGAATTTGAATAGGAATGGAGTAGTGCATGTGGACCATAATATGGACTCTAGGAAGGAGAACAACTTGAGGAAAGTAAGTTCTTATCCTAATACAAGGTCAGGTTTTGAATTTACAGAGACCTCTTGTAACAGATATGGTGAAGGTAGTAGTTGGGATCTGGAGGCTAATGAAGCCAAACCAGAAAGCTTCTTATCCAAGAACAAGCTGAGAGGTGTCTGGAGCAGAATAAATGCATATGGGTTCTTGATCAACATATGGACTCTTTATGGGAGTAGGGTCACTAGGAATTACACAAAGAGATTTAAAGATGGAGAAGAACAAAGTCATTCCCCATCATCTGCTGATGTTTCTCATGCACCCCAGGGTCATCAGGGGACATGGTTAGCCAATGGGTATAGAAATTTTGAAGTATTATCGGTGCCGGTTCGAACAAAGATTATGCACTTGCAGACCTGGCTTGGTGTAATTAGGGCAAGATACCAAAGATCACCTTATCGCATCCAAGTCCAGAGGCGTGCTGTTCAGTTGGTTTTGATAATAGTATTTGGACTCATTATTTTAGGTACGCTGGTGTCTCTACTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

362

Amino Acids

41.34

Weight (kDa)

8.48

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STX6_10_61_N PF09177 25 - 85 2.1e-10 Syntaxin 6/10/61, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 181
AccB1I GGYRCC 1 cut(s) 919
AccB7I CCANNNNNTGG 1 cut(s) 541
AccIII TCCGGA 1 cut(s) 58
AciI CCGC 1 cut(s) 16
AclWI GGATC 3 cut(s) 284, 425, 663
AcsI RAATTY 3 cut(s) 502, 608, 901
AcvI CACGTG 1 cut(s) 76
AfaI GTAC 2 cut(s) 463, 1066
AfiI CCNNNNNNNGG 1 cut(s) 541
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 7 cut(s) 47, 119, 149, 322, 508, 608, 908
AjnI CCWGG 2 cut(s) 861, 953
AloI GAACNNNNNNTCC 2 cut(s) 562, 594
AluBI AGCT 7 cut(s) 34, 162, 170, 251, 267, 687, 706
AluI AGCT 7 cut(s) 34, 162, 170, 251, 267, 687, 706
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 2 cut(s) 611, 1080
AlwI GGATC 3 cut(s) 284, 425, 663
Aor13HI TCCGGA 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 25
ApoI RAATTY 3 cut(s) 502, 608, 901
AspS9I GGNCC 2 cut(s) 61, 532
AsuHPI GGTGA 2 cut(s) 650, 981
AsuII TTCGAA 1 cut(s) 928
AvaII GGWCC 2 cut(s) 61, 532
BaeI ACNNNNGTAYC 2 cut(s) 1056, 1089
BanI GGYRCC 1 cut(s) 919
BbrPI CACGTG 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 12
BccI CCATC 4 cut(s) 332, 389, 803, 841
BciT130I CCWGG 2 cut(s) 863, 955
BclI TGATCA 1 cut(s) 747
BcoDI GTCTC 2 cut(s) 611, 1080
BfaI CTAG 3 cut(s) 447, 549, 783
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
BmcAI AGTACT 1 cut(s) 463
Bme1390I CCNGG 2 cut(s) 863, 955
Bme18I GGWCC 2 cut(s) 61, 532
BmgT120I GGNCC 2 cut(s) 61, 532
BmiI GGNNCC 2 cut(s) 63, 921
BmrFI CCNGG 2 cut(s) 863, 955
BmsI GCATC 2 cut(s) 190, 1008
BpiI GAAGAC 1 cut(s) 408
BpmI CTGGAG 2 cut(s) 680, 739
Bpu14I TTCGAA 1 cut(s) 928
BpuEI CTTGAG 1 cut(s) 586
BsaAI YACGTR 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 611
BsaJI CCNNGG 2 cut(s) 861, 862
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 541
Bse118I RCCGGY 1 cut(s) 922
BseAI TCCGGA 1 cut(s) 58
BseBI CCWGG 2 cut(s) 863, 955
BseDI CCNNGG 2 cut(s) 861, 862
BseGI GGATG 2 cut(s) 205, 999
BseLI CCNNNNNNNGG 1 cut(s) 541
BseMII CTCAG 1 cut(s) 698
BseXI GCAGC 1 cut(s) 12
BshNI GGYRCC 1 cut(s) 919
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 2 cut(s) 59, 923
BslFI GGGAC 3 cut(s) 169, 289, 889
BslI CCNNNNNNNGG 1 cut(s) 541
BsmAI GTCTC 2 cut(s) 611, 1080
BsmFI GGGAC 3 cut(s) 169, 289, 889
Bso31I GGTCTC 1 cut(s) 611
Bsp119I TTCGAA 1 cut(s) 928
Bsp1286I GDGCHC 1 cut(s) 381
Bsp13I TCCGGA 1 cut(s) 58
Bsp143I GATC 6 cut(s) 100, 289, 430, 655, 747, 986
BspACI CCGC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 699
BspEI TCCGGA 1 cut(s) 58
BspLI GGNNCC 2 cut(s) 63, 921
BspPI GGATC 3 cut(s) 284, 425, 663
BspQI GCTCTTC 1 cut(s) 257
BspT104I TTCGAA 1 cut(s) 928
BspT107I GGYRCC 1 cut(s) 919
BspTNI GGTCTC 1 cut(s) 611
BsrFI RCCGGY 1 cut(s) 922
BssAI RCCGGY 1 cut(s) 922
BssECI CCNNGG 2 cut(s) 861, 862
BssMI GATC 6 cut(s) 100, 289, 430, 655, 747, 986
Bst2UI CCWGG 2 cut(s) 863, 955
Bst4CI ACNGT 2 cut(s) 407, 461
Bst6I CTCTTC 1 cut(s) 257
BstBAI YACGTR 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 928
BstC8I GCNNGC 1 cut(s) 1017
BstDEI CTNAG 2 cut(s) 35, 707
BstF5I GGATG 2 cut(s) 205, 999
BstKTI GATC 6 cut(s) 103, 292, 433, 658, 750, 989
BstMAI GTCTC 2 cut(s) 611, 1080
BstMBI GATC 6 cut(s) 100, 289, 430, 655, 747, 986
BstMWI GCNNNNNNNGC 3 cut(s) 31, 671, 955
BstNI CCWGG 2 cut(s) 863, 955
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 2 cut(s) 861, 953
BstV1I GCAGC 1 cut(s) 12
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 2 cut(s) 289, 655
BstYI RGATCY 2 cut(s) 289, 655
BtsCI GGATG 2 cut(s) 205, 999
Cac8I GCNNGC 1 cut(s) 1017
Cfr10I RCCGGY 1 cut(s) 922
Cfr13I GGNCC 2 cut(s) 61, 532
Csp6I GTAC 2 cut(s) 462, 1065
CviAII CATG 4 cut(s) 29, 527, 854, 879
CviQI GTAC 2 cut(s) 462, 1065
DdeI CTNAG 2 cut(s) 35, 707
DpnI GATC 6 cut(s) 102, 291, 432, 657, 749, 988
DpnII GATC 6 cut(s) 100, 289, 430, 655, 747, 986
DraI TTTAAA 1 cut(s) 805
DrdI GACNNNNNNGTC 1 cut(s) 181
DseDI GACNNNNNNGTC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco31I GGTCTC 1 cut(s) 611
Eco47I GGWCC 2 cut(s) 61, 532
Eco72I CACGTG 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 861, 953
EcoT22I ATGCAT 1 cut(s) 736
FaeI CATG 4 cut(s) 32, 530, 857, 882
FalI AAGNNNNNCTT 2 cut(s) 976, 1008
FaqI GGGAC 3 cut(s) 169, 289, 889
FatI CATG 4 cut(s) 28, 526, 853, 878
FauNDI CATATG 2 cut(s) 736, 755
FbaI TGATCA 1 cut(s) 747
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 2 cut(s) 212, 986
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 3 cut(s) 447, 549, 783
GluI GCNGC 1 cut(s) 26
GsuI CTGGAG 2 cut(s) 680, 739
HapII CCGG 2 cut(s) 59, 923
Hin1II CATG 4 cut(s) 32, 530, 857, 882
HindIII AAGCTT 1 cut(s) 685
HinfI GANTC 5 cut(s) 5, 386, 545, 760, 1050
HpaII CCGG 2 cut(s) 59, 923
HphI GGTGA 2 cut(s) 650, 981
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 2 cut(s) 230, 385
Hpy188III TCNNGA 6 cut(s) 59, 428, 659, 718, 745, 1009
Hpy8I GTNNAC 1 cut(s) 532
HpyAV CCTTC 2 cut(s) 547, 635
HpyCH4III ACNGT 2 cut(s) 407, 461
HpyCH4IV ACGT 2 cut(s) 75, 97
HpyCH4V TGCA 9 cut(s) 28, 73, 107, 203, 526, 734, 857, 943, 949
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 671, 955
HpyF3I CTNAG 2 cut(s) 35, 707
HpySE526I ACGT 2 cut(s) 75, 97
Hsp92II CATG 4 cut(s) 32, 530, 857, 882
Kpn2I TCCGGA 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 747
Kzo9I GATC 6 cut(s) 100, 289, 430, 655, 747, 986
LguI GCTCTTC 1 cut(s) 257
LmnI GCTCC 1 cut(s) 720
Lsp1109I GCAGC 1 cut(s) 12
LweI GCATC 2 cut(s) 190, 1008
MaeI CTAG 3 cut(s) 447, 549, 783
MaeII ACGT 2 cut(s) 75, 97
MaeIII GTNAC 2 cut(s) 626, 778
MalI GATC 6 cut(s) 102, 291, 432, 657, 749, 988
MboI GATC 6 cut(s) 100, 289, 430, 655, 747, 986
MboII GAAGA 5 cut(s) 152, 274, 413, 432, 827
MflI RGATCY 2 cut(s) 289, 655
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 7 cut(s) 204, 495, 502, 608, 787, 901, 966
MlyI GAGTC 3 cut(s) 539, 754, 1044
MmeI TCCRAC 2 cut(s) 117, 458
MnlI CCTC 6 cut(s) 265, 561, 631, 655, 704, 1005
Mph1103I ATGCAT 1 cut(s) 736
MroI TCCGGA 1 cut(s) 58
MseI TTAA 3 cut(s) 209, 804, 1087
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 2 cut(s) 59, 923
MspR9I CCNGG 2 cut(s) 863, 955
MvaI CCWGG 2 cut(s) 863, 955
MwoI GCNNNNNNNGC 3 cut(s) 31, 671, 955
NdeI CATATG 2 cut(s) 736, 755
NdeII GATC 6 cut(s) 100, 289, 430, 655, 747, 986
NlaIII CATG 4 cut(s) 32, 530, 857, 882
NlaIV GGNNCC 2 cut(s) 63, 921
NmuCI GTSAC 1 cut(s) 778
NsiI ATGCAT 1 cut(s) 736
NspI RCATGY 1 cut(s) 530
NspV TTCGAA 1 cut(s) 928
PasI CCCWGGG 1 cut(s) 862
PciSI GCTCTTC 1 cut(s) 257
PfeI GAWTC 2 cut(s) 5, 386
PflMI CCANNNNNTGG 1 cut(s) 541
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 3 cut(s) 539, 754, 1044
PmaCI CACGTG 1 cut(s) 76
PmlI CACGTG 1 cut(s) 76
PpsI GAGTC 3 cut(s) 539, 754, 1044
Ppu21I YACGTR 1 cut(s) 76
Psp6I CCWGG 2 cut(s) 861, 953
PspCI CACGTG 1 cut(s) 76
PspGI CCWGG 2 cut(s) 861, 953
PspN4I GGNNCC 2 cut(s) 63, 921
PspPI GGNCC 2 cut(s) 61, 532
PsuI RGATCY 2 cut(s) 289, 655
RsaI GTAC 2 cut(s) 463, 1066
RsaNI GTAC 2 cut(s) 462, 1065
RseI CAYNNNNRTG 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 257
SaqAI TTAA 3 cut(s) 209, 804, 1087
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 6 cut(s) 100, 289, 430, 655, 747, 986
Sau96I GGNCC 2 cut(s) 61, 532
ScaI AGTACT 1 cut(s) 463
SchI GAGTC 3 cut(s) 539, 754, 1044
ScrFI CCNGG 2 cut(s) 863, 955
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 2 cut(s) 190, 1008
SfuI TTCGAA 1 cut(s) 928
SinI GGWCC 2 cut(s) 61, 532
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 565
SmoI CTYRAG 1 cut(s) 565
Sse9I AATT 7 cut(s) 204, 495, 502, 608, 787, 901, 966
SsiI CCGC 1 cut(s) 16
SspMI CTAG 3 cut(s) 447, 549, 783
StyD4I CCNGG 2 cut(s) 861, 953
TaaI ACNGT 2 cut(s) 407, 461
TaiI ACGT 2 cut(s) 78, 100
TaqI TCGA 3 cut(s) 8, 80, 928
TasI AATT 7 cut(s) 204, 495, 502, 608, 787, 901, 966
TatI WGTACW 1 cut(s) 461
TfiI GAWTC 2 cut(s) 5, 386
Tru1I TTAA 3 cut(s) 209, 804, 1087
Tru9I TTAA 3 cut(s) 209, 804, 1087
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 2 cut(s) 339, 684
TspGWI ACGGA 1 cut(s) 320
Van91I CCANNNNNTGG 1 cut(s) 541
VpaK11BI GGWCC 2 cut(s) 61, 532
XapI RAATTY 3 cut(s) 502, 608, 901
XceI RCATGY 1 cut(s) 530
XspI CTAG 3 cut(s) 447, 549, 783
ZrmI AGTACT 1 cut(s) 463
Zsp2I ATGCAT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.