FvH4_6g21280

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008147
Physical Location & Seq
Reverse (-)
14825513 .. 14825991
479 bp
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UTR
Exon/CDS
Intron
FvH4_6g21280.t1

Sequence Viewer

Length: 333 bp
ATGCAGCAACTAAAGGTAATTGCGTCAATTACTTTGTTCTTCAACAAAAAATTTGGATCATACTATCCTATTACTGACAAGAGCTTAACTGGAAATTTTACAGGAGCTATCATTCAGATTTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCATGATTGAGCATCGTGATGATTTCAGAAGGCTAATAGCTCGAACTCCCATTCGTCGCCTTGCAGACCCTAATGAGATATCATCTCTAGTGATATTTCTTTGCCTCCCAGCTGCTTCATACATCAATGGACAAGTTGTTAGCTTTGATGGAGGATTTACAGTTACTGGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

111

Amino Acids

12.49

Weight (kDa)

10.15

Isoelectric Point (pI)

29.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 61 - 106 1.6e-09 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 2 cut(s) 50, 94
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 5 cut(s) 84, 107, 197, 269, 300
AluI AGCT 5 cut(s) 84, 107, 197, 269, 300
AlwI GGATC 1 cut(s) 64
AlwNI CAGNNNCTG 1 cut(s) 323
ApeKI GCWGC 2 cut(s) 4, 269
ApoI RAATTY 2 cut(s) 50, 94
BbvI GCAGC 2 cut(s) 16, 256
BccI CCATC 1 cut(s) 299
BfaI CTAG 2 cut(s) 245, 331
BisI GCNGC 2 cut(s) 5, 270
BlsI GCNGC 2 cut(s) 6, 271
BmsI GCATC 1 cut(s) 178
Bse1I ACTGG 2 cut(s) 94, 328
BseNI ACTGG 2 cut(s) 94, 328
BseXI GCAGC 2 cut(s) 16, 256
BseYI CCCAGC 1 cut(s) 265
Bsp143I GATC 1 cut(s) 56
BspHI TCATGA 1 cut(s) 159
BspPI GGATC 1 cut(s) 64
BsrI ACTGG 2 cut(s) 94, 328
BssMI GATC 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 319
BstKTI GATC 1 cut(s) 59
BstMBI GATC 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 16, 256
CaiI CAGNNNCTG 1 cut(s) 323
CciI TCATGA 1 cut(s) 159
CseI GACGC 1 cut(s) 12
CviAII CATG 1 cut(s) 160
CviJI RGCY 6 cut(s) 84, 107, 190, 197, 269, 300
CviKI_1 RGCY 6 cut(s) 84, 107, 190, 197, 269, 300
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
Eco32I GATATC 1 cut(s) 237
EcoRV GATATC 1 cut(s) 237
FaeI CATG 1 cut(s) 163
FaiI YATR 3 cut(s) 61, 161, 277
FatI CATG 1 cut(s) 159
Fnu4HI GCNGC 2 cut(s) 5, 270
Fsp4HI GCNGC 2 cut(s) 5, 270
FspBI CTAG 2 cut(s) 245, 331
GluI GCNGC 2 cut(s) 5, 270
GsaI CCCAGC 1 cut(s) 269
HgaI GACGC 1 cut(s) 12
Hin1II CATG 1 cut(s) 163
Hpy188I TCNGA 3 cut(s) 117, 124, 185
Hpy188III TCNNGA 2 cut(s) 160, 173
Hpy99I CGWCG 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 4, 221
Hsp92II CATG 1 cut(s) 163
Kzo9I GATC 1 cut(s) 56
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 4 cut(s) 75, 87, 279, 309
Lsp1109I GCAGC 2 cut(s) 16, 256
LweI GCATC 1 cut(s) 178
MaeI CTAG 2 cut(s) 245, 331
MaeIII GTNAC 1 cut(s) 319
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MboII GAAGA 1 cut(s) 31
MluCI AATT 4 cut(s) 18, 27, 50, 94
MnlI CCTC 2 cut(s) 272, 302
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 269
NdeII GATC 1 cut(s) 56
NlaIII CATG 1 cut(s) 163
PagI TCATGA 1 cut(s) 159
PkrI GCNGC 2 cut(s) 6, 271
PspFI CCCAGC 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 323
PvuII CAGCTG 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 2 cut(s) 5, 270
Sau3AI GATC 1 cut(s) 56
SetI ASST 6 cut(s) 18, 86, 109, 199, 271, 302
SfaNI GCATC 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 4 cut(s) 18, 27, 50, 94
SspMI CTAG 2 cut(s) 245, 331
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 199
TasI AATT 4 cut(s) 18, 27, 50, 94
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseI GCWGC 2 cut(s) 4, 269
TspDTI ATGAA 1 cut(s) 264
XapI RAATTY 2 cut(s) 50, 94
XspI CTAG 2 cut(s) 245, 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.