Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008147

Physical Location & Seq

Genomic Coordinates Forward (+)

37331148 .. 37331866

Gene Structure 719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCAGGTAAATAATGCTGCTTCAGTTACCCTGAGAAGAACCGAAGAATATACCTTAGAAGATTTATCAAGTATGATGGGTACCAATGTTGAATCTTCTTACCATCTCTGTCAACTTTCATACCCTCTCTTGAAGGCCTCAGAAAATGCAAGTATTGTATTTATCGCCTCCATAGCTGGTGCCATAGCTCTACCTAGACTATCTGCTTATGCAGCAACAAAGAGTGCTGTTATCCAAATTTCAAAGAACTTGGCATGTGAGTGGGCAAGAGACAAAATTCGAACAAACACTGTAGCGCCATGGGCTGTCAACACCGGTGTTAAAGTTGAAAATGATGATCATTCTGAGGATTTCAGACGATTAATAGGTCGAACTCCAATTCGTCGTGTTGCTGAGCCTAATGAAATTTCATCCTTGGTCTCTTTCCTCTGCCTTCCTGCTGCTTCTTACATCAATGGACAGGTTGTTAATGTTGATGGAGGATTTACAGTGAGCGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

167

Amino Acids

18.16

Weight (kDa)

6.11

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	3 - 163	2.7e-36	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	3 - 112	2.4e-24	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21280
malus_domestica	MD07G1203600.v1.1
pyrus_communis	pycom04g12220 pycom11g07960 pycom11g07980 pycom12g14210
rosa_chinensis	RchiOBHm_Chr3g0465431 RchiOBHm_Chr3g0465481 RchiOBHm_Chr3g0491421 RchiOBHm_Chr4g0408491
rosa_laevigata	RLG00000024640
rosa_roxburghii	Rroxscaffold_6G00407890 Rroxscaffold_6G00415070
rosa_rugosa	Rorug03G0162700 Rorug03G0249300
rosa_samantha	Rh3AG185900 Rh3BG141900 Rh3BG213800 Rh3CG143000 Rh3CG210600 Rh3DG143000 Rh3DG209700 Rh4CG157900 Rh7AG357500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	80
AccB1I	GGYRCC	2 cut(s)	80, 179
AccBSI	CCGCTC	1 cut(s)	495
AciI	CCGC	1 cut(s)	495
AcsI	RAATTY	3 cut(s)	237, 276, 405
AcuI	CTGAAG	1 cut(s)	6
AfaI	GTAC	1 cut(s)	82
AgeI	ACCGGT	1 cut(s)	314
AgsI	TTSAA	4 cut(s)	92, 133, 243, 329
AluBI	AGCT	2 cut(s)	176, 188
AluI	AGCT	2 cut(s)	176, 188
Alw26I	GTCTC	2 cut(s)	264, 424
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	3 cut(s)	17, 212, 440
ApoI	RAATTY	3 cut(s)	237, 276, 405
AseI	ATTAAT	1 cut(s)	362
AsiGI	ACCGGT	1 cut(s)	314
Asp718I	GGTACC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	298
AsuII	TTCGAA	1 cut(s)	280
BaeI	ACNNNNGTAYC	2 cut(s)	72, 105
BanI	GGYRCC	2 cut(s)	80, 179
BbvI	GCAGC	3 cut(s)	4, 224, 427
BccI	CCATC	3 cut(s)	70, 111, 470
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	264, 424
BfaI	CTAG	2 cut(s)	195, 502
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	299
BisI	GCNGC	3 cut(s)	18, 213, 441
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	3 cut(s)	19, 214, 442
BmiI	GGNNCC	2 cut(s)	82, 181
Bpu1102I	GCTNAGC	1 cut(s)	393
Bpu14I	TTCGAA	1 cut(s)	280
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	2 cut(s)	299, 414
BsaWI	WCCGGW	1 cut(s)	314
Bse118I	RCCGGY	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	299, 414
BseGI	GGATG	1 cut(s)	410
BseMII	CTCAG	4 cut(s)	23, 153, 336, 384
BseXI	GCAGC	3 cut(s)	4, 224, 427
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	2 cut(s)	80, 179
BshTI	ACCGGT	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	315
BsmAI	GTCTC	2 cut(s)	264, 424
BsnI	GGCC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	424
Bsp119I	TTCGAA	1 cut(s)	280
Bsp143I	GATC	1 cut(s)	337
Bsp1720I	GCTNAGC	1 cut(s)	393
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	4 cut(s)	24, 152, 337, 385
BspLI	GGNNCC	2 cut(s)	82, 181
BspT104I	TTCGAA	1 cut(s)	280
BspT107I	GGYRCC	2 cut(s)	80, 179
BspTNI	GGTCTC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	495
BsrFI	RCCGGY	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	299, 414
BssMI	GATC	1 cut(s)	337
BssT1I	CCWWGG	2 cut(s)	299, 414
Bst4CI	ACNGT	2 cut(s)	292, 490
BstBI	TTCGAA	1 cut(s)	280
BstDEI	CTNAG	5 cut(s)	32, 55, 139, 345, 393
BstDSI	CCRYGG	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	410
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	2 cut(s)	264, 424
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 212, 302
BstNSI	RCATGY	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	3 cut(s)	4, 224, 427
BsuRI	GGCC	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	410
BtsIMutI	CAGTG	2 cut(s)	288, 495
CfoI	GCGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	81
CspAI	ACCGGT	1 cut(s)	314
CviAII	CATG	2 cut(s)	255, 300
CviJI	RGCY	5 cut(s)	137, 176, 188, 305, 397
CviKI_1	RGCY	5 cut(s)	137, 176, 188, 305, 397
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	5 cut(s)	32, 55, 139, 345, 393
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eco130I	CCWWGG	2 cut(s)	299, 414
Eco147I	AGGCCT	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	6
EcoT14I	CCWWGG	2 cut(s)	299, 414
ErhI	CCWWGG	2 cut(s)	299, 414
FaeI	CATG	2 cut(s)	258, 303
FaiI	YATR	8 cut(s)	51, 74, 121, 173, 185, 210, 256, 301
FatI	CATG	2 cut(s)	254, 299
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	3 cut(s)	18, 213, 441
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	3 cut(s)	18, 213, 441
FspBI	CTAG	2 cut(s)	195, 502
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	3 cut(s)	18, 213, 441
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	1 cut(s)	315
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	2 cut(s)	258, 303
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HincII	GTYRAC	2 cut(s)	113, 310
HindII	GTYRAC	2 cut(s)	113, 310
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	315
Hpy166II	GTNNAC	2 cut(s)	113, 310
Hpy188I	TCNGA	3 cut(s)	142, 346, 356
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	2 cut(s)	113, 310
Hpy99I	CGWCG	1 cut(s)	387
HpyAV	CCTTC	2 cut(s)	127, 443
HpyCH4III	ACNGT	2 cut(s)	292, 490
HpyCH4V	TGCA	3 cut(s)	4, 149, 212
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 212, 302
HpyF3I	CTNAG	5 cut(s)	32, 55, 139, 345, 393
Hsp92II	CATG	2 cut(s)	258, 303
HspAI	GCGC	1 cut(s)	296
KpnI	GGTACC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	337
LpnPI	CCDG	5 cut(s)	44, 162, 328, 446, 450
Lsp1109I	GCAGC	3 cut(s)	4, 224, 427
MaeI	CTAG	2 cut(s)	195, 502
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	339
MbiI	CCGCTC	1 cut(s)	495
MboI	GATC	1 cut(s)	337
MboII	GAAGA	4 cut(s)	48, 56, 71, 87
MluCI	AATT	4 cut(s)	237, 276, 378, 405
MnlI	CCTC	6 cut(s)	135, 148, 178, 340, 437, 473
MseI	TTAA	3 cut(s)	321, 362, 468
MslI	CAYNNNNRTG	1 cut(s)	259
MspI	CCGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	173, 212, 302
NcoI	CCATGG	1 cut(s)	299
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	258, 303
NlaIV	GGNNCC	2 cut(s)	82, 181
NspI	RCATGY	1 cut(s)	258
NspV	TTCGAA	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	92
PinAI	ACCGGT	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	19, 214, 442
PshBI	ATTAAT	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	82, 181
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	321, 362, 468
SatI	GCNGC	3 cut(s)	18, 213, 441
Sau3AI	GATC	1 cut(s)	337
SetI	ASST	7 cut(s)	9, 56, 178, 190, 196, 370, 465
SfcI	CTRYAG	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	280
SgrAI	CRCCGGYG	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	259
Sse9I	AATT	4 cut(s)	237, 276, 378, 405
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	1 cut(s)	495
SspMI	CTAG	2 cut(s)	195, 502
StuI	AGGCCT	1 cut(s)	137
StyI	CCWWGG	2 cut(s)	299, 414
TaaI	ACNGT	2 cut(s)	292, 490
TaqI	TCGA	2 cut(s)	280, 370
TasI	AATT	4 cut(s)	237, 276, 378, 405
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	3 cut(s)	321, 362, 468
Tru9I	TTAA	3 cut(s)	321, 362, 468
TscAI	CASTG	2 cut(s)	295, 495
TseI	GCWGC	3 cut(s)	17, 212, 440
TspDTI	ATGAA	3 cut(s)	108, 399, 417
TspRI	CASTG	2 cut(s)	295, 495
VspI	ATTAAT	1 cut(s)	362
XapI	RAATTY	3 cut(s)	237, 276, 405
XceI	RCATGY	1 cut(s)	258
XspI	CTAG	2 cut(s)	195, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.