Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000333

Physical Location & Seq

Genomic Coordinates Reverse (-)

13520805 .. 13524715

Gene Structure 3911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0162700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2118 bp

ATGATTACGTTTATGGACTCGAAAGAAAAATTGAAGGAGGGAGAGAAGTGCTTGGATCCTCAGCTATGGCATGCCTGTGCTGGAGGGATGGTTCAAATGCCATCGGTGAATGCCAAGGTTTTTTACTTCCCTCAGGGCCACGCCGAGCACGCTTGTGGCCCAGTCGATTTCAGGAACTGCCCGAGGATTCCGCCTTACATACTCTGCAGAGTCTCGGCCATCAAGTTCATGGCTGATCCTGAGACTGATGAGGTTTATGCCAAGATTAGGCTGGTTCCTTTGAGCTCCAGTGAGGCTGGTTATGAGGATAATGGAATTGGGGGGATTAATGGGGGTGATTCGCAAGATAAGCCAGCCTCATTTGCGAAGACTCTGACTCAGTCGGATGCTAACAATGGTGGGGGGTTTTCTGTGCCGAGATACTGTGCTGAAACCATCTTTCCCAGATTGGACTACTCGGCTGATCCTCCTGTGCAGACAATTCTTGCTAAGGATGTTCATGGCGAGACTTGGAAGTTTAGGCACATATATAGGGGCACGCCGAGGCGGCATCTATTGACCACCGGGTGGAGTACTTTTGTGAACCACAAGAAGCTTGTTGCTGGGGACTCGATTGTGTTTTTGAGGGCGGAGAACGGTGATCTTTGTGTTGGAATTCGGCGAGCCAAGAGGGGAATTGGGGGTGGGCCGGAGTCATCTTCTGGGTGGAATCCGGCGGGTGGGAATTGTGCCATGCCATATGGAGGGTTCTCTTCCTATTTGAGGGAGGATGAGGGGAAACTGATGAGAAATGGCAATGGTAATGGCTCGAATTCGAATGGAAGTCTAATGGGGAAGGGGAAAGTTGGTCCTGAATCGGTTTTGGAAGCTGCAACACTTGCTTCAAATGGACAACCCTTTGAGGTTGTTTACTACCCTCGAGCAAGTACTCCAGAGTTTTGTGTGAAAGCCTCGTTGGTGAAGGCAGCATTGCAGATCCGTTGGTGCCCCGGAATGAGATTTAAGATGGCCTTTGAAACCGAAGATTCTTCCAGGATAAGTTGGTTCATGGGAACCATATCCTCTGTTCATGTTTCTGAGCCTATGCGCTGGCCTGAATCACCTTGGCGGCTTCTCCAGGTTAGCTGGGATGAACCTGATTTGCTTCAGAATGTTAAGCGCGTTAGCCCGTGGCTGGTAGAATTGGTGTCAAACATGCCCGCCATCCATCTGACACCCTTCTCACCACCAAGGAAGAAGATGAGACTGCCACAACACCCCGATTTCCCGTTTGAGGGACAACTTCCAATGCCGACATTTTCCGGCAATCACCACCTCCTTGGAACCAGCAGCCCCTTCGGTTGTCTGCCCGACAAAACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTACGGTCTATCCTTATCAGATATCCACCTCAATAAACTGCAATCAGGTCTATTTCCGGCTGGTTTCCCGCCACTTGATCATGTTGCTACTCCCACCAAATTCTCCAATAACACAATGATTCAAAGGCCTACCATGAGCGAGAATGTGTCTTGCTTGTTAACTATGGCACATTCTCCACAGTCTTCAAAGAAACCCGATGATGTAAAGCCACCGCAGCTCATGCTCTTCGGTCAACCAATACTTACTGAGCAGCAAATCTCTATGAGCTCCTCTGGCGATACTGTCTCACCAGTGCTTACTGGAAATAGTTCGTCAGATGGAAGTGGAGATAAAATGGCAAACCATTCTGATAATTCTGGATCTGCACTTCACCAACAAAGCGTACAAGAGCGATCATCCGGTGAAGGTTTCCATTGGTATAAGGACACTCGGCATGAAGCTGAACCAAATTTGGAAACTGGTCACTGTAAAGTCTTTATGGAATCTGAAGATGTAGGCCGCACTCTTGACTTTTCACAGTTCAAGTCTTATGATGAATTGTATACGAAACTGGCAGACATGTTTGGCATAGAAAATTCCGAGACACTGAACCATGTGCTCTATCGAGATGCTACTGGTGCAGTCAAACACATTGGAGACGAACCATTCAGTTGCAGTGACTTTGTGAAAACGGCAAGGAGATTGACGATTCTAATGGATTCAGGCAGCAACAATGTAGGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203

Pfam Domains

Protein Families

MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

705

Amino Acids

77.42

Weight (kDa)

6.48

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	121 - 222	3.5e-23	B3 DNA binding domain
BRWD_AD	PF25313	295 - 396	7.9e-09	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	313 - 396	1.8e-33	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca	FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica	MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica	Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis	pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis	RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata	RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora	Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa	Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha	Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana	Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	984
AccB7I	CCANNNNNTGG	1 cut(s)	567
AccI	GTMKAC	1 cut(s)	1934
AccII	CGCG	1 cut(s)	1161
AciI	CCGC	9 cut(s)	191, 547, 629, 716, 1108, 1200, 1460, 1604, 1891
AclWI	GGATC	6 cut(s)	50, 63, 230, 458, 970, 1759
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	5 cut(s)	654, 811, 1490, 1840, 1966
AcuI	CTGAAG	2 cut(s)	1130, 1899
AdeI	CACNNNGTG	1 cut(s)	567
AfaI	GTAC	3 cut(s)	574, 928, 1776
AfiI	CCNNNNNNNGG	8 cut(s)	267, 567, 719, 743, 762, 1174, 1273, 1274
AflIII	ACRYGT	1 cut(s)	1950
AgsI	TTSAA	7 cut(s)	34, 95, 885, 1016, 1514, 1578, 1915
AjnI	CCWGG	3 cut(s)	1031, 1116, 1379
AjuI	GAANNNNNNNTTGG	2 cut(s)	938, 970
AleI	CACNNNNGTG	1 cut(s)	153
AloI	GAACNNNNNNTCC	2 cut(s)	75, 107
AluBI	AGCT	8 cut(s)	64, 285, 595, 869, 1125, 1609, 1659, 1832
AluI	AGCT	8 cut(s)	64, 285, 595, 869, 1125, 1609, 1659, 1832
Alw21I	GWGCWC	4 cut(s)	150, 287, 1661, 1992
Alw26I	GTCTC	7 cut(s)	217, 236, 500, 1237, 1681, 1967, 2022
AlwI	GGATC	6 cut(s)	50, 63, 230, 458, 970, 1759
AlwNI	CAGNNNCTG	1 cut(s)	177
Ama87I	CYCGRG	2 cut(s)	181, 918
AoxI	GGCC	8 cut(s)	136, 157, 216, 686, 1008, 1091, 1517, 1888
ApeKI	GCWGC	6 cut(s)	869, 965, 1329, 1606, 1642, 2097
ApoI	RAATTY	5 cut(s)	654, 811, 1490, 1840, 1966
AseI	ATTAAT	1 cut(s)	327
Asp700I	GAANNNNTTC	1 cut(s)	1699
AspLEI	GCGC	2 cut(s)	1089, 1161
AspS9I	GGNCC	4 cut(s)	136, 158, 686, 848
AsuC2I	CCSGG	2 cut(s)	565, 990
AsuII	TTCGAA	1 cut(s)	815
AvaI	CYCGRG	2 cut(s)	181, 918
AvaII	GGWCC	1 cut(s)	848
AxyI	CCTNAGG	1 cut(s)	132
BaeGI	GKGCMC	2 cut(s)	539, 989
BamHI	GGATCC	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	984
BanII	GRGCYC	2 cut(s)	287, 1661
BbsI	GAAGAC	2 cut(s)	374, 1566
Bbv12I	GWGCWC	4 cut(s)	150, 287, 1661, 1992
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	6 cut(s)	856, 977, 1341, 1618, 1654, 2109
BccI	CCATC	8 cut(s)	82, 109, 227, 443, 1000, 1211, 1215, 1703
BceAI	ACGGC	1 cut(s)	2079
BcgI	CGANNNNNNTGC	2 cut(s)	1318, 1352
BciT130I	CCWGG	3 cut(s)	1033, 1118, 1381
BclI	TGATCA	1 cut(s)	1468
BcnI	CCSGG	2 cut(s)	565, 990
BcoDI	GTCTC	7 cut(s)	217, 236, 500, 1237, 1681, 1967, 2022
BfmI	CTRYAG	1 cut(s)	205
BglI	GCCNNNNNGGC	1 cut(s)	547
BisI	GCNGC	9 cut(s)	548, 870, 966, 1109, 1330, 1607, 1643, 1891, 2098
BlsI	GCNGC	9 cut(s)	549, 871, 967, 1110, 1331, 1608, 1644, 1892, 2099
BmcAI	AGTACT	2 cut(s)	574, 928
Bme1390I	CCNGG	5 cut(s)	565, 990, 1033, 1118, 1381
Bme18I	GGWCC	1 cut(s)	848
BmeT110I	CYCGRG	2 cut(s)	181, 918
BmgT120I	GGNCC	4 cut(s)	136, 158, 686, 848
BmiI	GGNNCC	6 cut(s)	57, 276, 986, 1054, 1324, 1378
BmrFI	CCNGG	5 cut(s)	565, 990, 1033, 1118, 1381
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	3 cut(s)	376, 559, 1990
BmuI	ACTGGG	1 cut(s)	155
BpiI	GAAGAC	2 cut(s)	374, 1566
BpmI	CTGGAG	4 cut(s)	102, 271, 915, 1100
Bpu10I	CCTNAGC	2 cut(s)	60, 489
Bpu14I	TTCGAA	1 cut(s)	815
BpuMI	CCSGG	2 cut(s)	565, 990
BsaJI	CCNNGG	8 cut(s)	114, 182, 542, 988, 1103, 1169, 1229, 1318
BsaWI	WCCGGW	1 cut(s)	1790
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	8 cut(s)	267, 567, 719, 743, 762, 1174, 1273, 1274
Bse1I	ACTGG	7 cut(s)	161, 288, 1682, 1696, 1855, 1947, 2011
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	2 cut(s)	802, 968
BseBI	CCWGG	3 cut(s)	1033, 1118, 1381
BseDI	CCNNGG	8 cut(s)	114, 182, 542, 988, 1103, 1169, 1229, 1318
BseGI	GGATG	7 cut(s)	93, 391, 499, 775, 1135, 1203, 1787
BseLI	CCNNNNNNNGG	8 cut(s)	267, 567, 719, 743, 762, 1174, 1273, 1274
BseMI	GCAATG	2 cut(s)	802, 968
BseMII	CTCAG	6 cut(s)	74, 146, 231, 392, 1068, 1629
BseNI	ACTGG	7 cut(s)	161, 288, 1682, 1696, 1855, 1947, 2011
BseRI	GAGGAG	1 cut(s)	1651
BseSI	GKGCMC	2 cut(s)	539, 989
BseXI	GCAGC	6 cut(s)	856, 977, 1341, 1618, 1654, 2109
BseYI	CCCAGC	2 cut(s)	602, 1125
BsgI	GTGCAG	3 cut(s)	494, 1740, 2031
Bsh1236I	CGCG	1 cut(s)	1161
BshFI	GGCC	8 cut(s)	138, 159, 218, 688, 1010, 1093, 1519, 1890
BshNI	GGYRCC	1 cut(s)	984
BsiHKAI	GWGCWC	4 cut(s)	150, 287, 1661, 1992
BsiHKCI	CYCGRG	2 cut(s)	181, 918
BsiSI	CCGG	7 cut(s)	564, 689, 713, 990, 1302, 1448, 1791
BslFI	GGGAC	2 cut(s)	620, 1290
BslI	CCNNNNNNNGG	8 cut(s)	267, 567, 719, 743, 762, 1174, 1273, 1274
BsmAI	GTCTC	7 cut(s)	217, 236, 500, 1237, 1681, 1967, 2022
BsmBI	CGTCTC	1 cut(s)	2022
BsmFI	GGGAC	2 cut(s)	620, 1290
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	8 cut(s)	138, 159, 218, 688, 1010, 1093, 1519, 1890
BsoBI	CYCGRG	2 cut(s)	181, 918
Bsp119I	TTCGAA	1 cut(s)	815
Bsp1286I	GDGCHC	6 cut(s)	150, 287, 539, 989, 1661, 1992
Bsp143I	GATC	8 cut(s)	55, 235, 463, 640, 975, 1468, 1751, 1784
BspACI	CCGC	9 cut(s)	191, 547, 629, 716, 1108, 1200, 1460, 1604, 1891
BspANI	GGCC	8 cut(s)	138, 159, 218, 688, 1010, 1093, 1519, 1890
BspCNI	CTCAG	6 cut(s)	73, 145, 232, 391, 1069, 1630
BspFNI	CGCG	1 cut(s)	1161
BspLI	GGNNCC	6 cut(s)	57, 276, 986, 1054, 1324, 1378
BspMAI	CTGCAG	1 cut(s)	209
BspPI	GGATC	6 cut(s)	50, 63, 230, 458, 970, 1759
BspQI	GCTCTTC	1 cut(s)	1622
BspT104I	TTCGAA	1 cut(s)	815
BspT107I	GGYRCC	1 cut(s)	984
BsrDI	GCAATG	2 cut(s)	802, 968
BsrI	ACTGG	7 cut(s)	161, 288, 1682, 1696, 1855, 1947, 2011
BssECI	CCNNGG	8 cut(s)	114, 182, 542, 988, 1103, 1169, 1229, 1318
BssMI	GATC	8 cut(s)	55, 235, 463, 640, 975, 1468, 1751, 1784
BssNAI	GTATAC	1 cut(s)	1935
BssT1I	CCWWGG	4 cut(s)	114, 1103, 1229, 1318
Bst1107I	GTATAC	1 cut(s)	1935
Bst2UI	CCWGG	3 cut(s)	1033, 1118, 1381
Bst4CI	ACNGT	7 cut(s)	425, 638, 1397, 1572, 1675, 1859, 1911
Bst6I	CTCTTC	2 cut(s)	757, 1622
BstAPI	GCANNNNNTGC	2 cut(s)	878, 1612
BstBI	TTCGAA	1 cut(s)	815
BstDEI	CTNAG	7 cut(s)	60, 132, 240, 378, 489, 1077, 1638
BstDSI	CCRYGG	1 cut(s)	1169
BstENI	CCTNNNNNAGG	1 cut(s)	760
BstF5I	GGATG	7 cut(s)	93, 391, 499, 775, 1135, 1203, 1787
BstFNI	CGCG	1 cut(s)	1161
BstHHI	GCGC	2 cut(s)	1089, 1161
BstKTI	GATC	8 cut(s)	58, 238, 466, 643, 978, 1471, 1754, 1787
BstMAI	GTCTC	7 cut(s)	217, 236, 500, 1237, 1681, 1967, 2022
BstMBI	GATC	8 cut(s)	55, 235, 463, 640, 975, 1468, 1751, 1784
BstNI	CCWGG	3 cut(s)	1033, 1118, 1381
BstNSI	RCATGY	5 cut(s)	74, 1198, 1372, 1388, 1954
BstSCI	CCNGG	5 cut(s)	563, 988, 1031, 1116, 1379
BstSFI	CTRYAG	1 cut(s)	205
BstSLI	GKGCMC	2 cut(s)	539, 989
BstUI	CGCG	1 cut(s)	1161
BstV1I	GCAGC	6 cut(s)	856, 977, 1341, 1618, 1654, 2109
BstV2I	GAAGAC	2 cut(s)	374, 1566
BstX2I	RGATCY	3 cut(s)	55, 975, 1751
BstXI	CCANNNNNNTGG	1 cut(s)	1319
BstYI	RGATCY	3 cut(s)	55, 975, 1751
BstZ17I	GTATAC	1 cut(s)	1935
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	8 cut(s)	138, 159, 218, 688, 1010, 1093, 1519, 1890
BtgI	CCRYGG	1 cut(s)	1169
BtsCI	GGATG	7 cut(s)	93, 391, 499, 775, 1135, 1203, 1787
BtsI	GCAGTG	1 cut(s)	2053
BtsIMutI	CAGTG	5 cut(s)	295, 1689, 1855, 1976, 2053
CaiI	CAGNNNCTG	1 cut(s)	177
CfoI	GCGC	2 cut(s)	1089, 1161
Cfr13I	GGNCC	4 cut(s)	136, 158, 686, 848
Csp6I	GTAC	3 cut(s)	573, 927, 1775
CviQI	GTAC	3 cut(s)	573, 927, 1775
DdeI	CTNAG	7 cut(s)	60, 132, 240, 378, 489, 1077, 1638
DpnI	GATC	8 cut(s)	57, 237, 465, 642, 977, 1470, 1753, 1786
DpnII	GATC	8 cut(s)	55, 235, 463, 640, 975, 1468, 1751, 1784
DraIII	CACNNNGTG	1 cut(s)	567
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	757, 1622
EarI	CTCTTC	2 cut(s)	757, 1622
EciI	GGCGGA	2 cut(s)	180, 644
Ecl136II	GAGCTC	2 cut(s)	285, 1659
Eco130I	CCWWGG	4 cut(s)	114, 1103, 1229, 1318
Eco147I	AGGCCT	1 cut(s)	1519
Eco24I	GRGCYC	2 cut(s)	287, 1661
Eco32I	GATATC	1 cut(s)	1414
Eco47I	GGWCC	1 cut(s)	848
Eco53kI	GAGCTC	2 cut(s)	285, 1659
Eco57I	CTGAAG	2 cut(s)	1130, 1899
Eco81I	CCTNAGG	1 cut(s)	132
Eco88I	CYCGRG	2 cut(s)	181, 918
EcoICRI	GAGCTC	2 cut(s)	285, 1659
EcoNI	CCTNNNNNAGG	1 cut(s)	760
EcoRI	GAATTC	2 cut(s)	654, 811
EcoRII	CCWGG	3 cut(s)	1031, 1116, 1379
EcoRV	GATATC	1 cut(s)	1414
EcoT14I	CCWWGG	4 cut(s)	114, 1103, 1229, 1318
EcoT38I	GRGCYC	2 cut(s)	287, 1661
ErhI	CCWWGG	4 cut(s)	114, 1103, 1229, 1318
Esp3I	CGTCTC	1 cut(s)	2022
FalI	AAGNNNNNCTT	2 cut(s)	995, 1027
FaqI	GGGAC	2 cut(s)	620, 1290
FauI	CCCGC	3 cut(s)	709, 1207, 1467
FauNDI	CATATG	1 cut(s)	739
FbaI	TGATCA	1 cut(s)	1468
FblI	GTMKAC	1 cut(s)	1934
Fnu4HI	GCNGC	9 cut(s)	548, 870, 966, 1109, 1330, 1607, 1643, 1891, 2098
FokI	GGATG	7 cut(s)	100, 398, 506, 782, 1142, 1190, 1774
FriOI	GRGCYC	2 cut(s)	287, 1661
Fsp4HI	GCNGC	9 cut(s)	548, 870, 966, 1109, 1330, 1607, 1643, 1891, 2098
GlaI	GCGC	2 cut(s)	1088, 1160
GluI	GCNGC	9 cut(s)	548, 870, 966, 1109, 1330, 1607, 1643, 1891, 2098
GsaI	CCCAGC	2 cut(s)	606, 1129
GsuI	CTGGAG	4 cut(s)	102, 271, 915, 1100
HaeIII	GGCC	8 cut(s)	138, 159, 218, 688, 1010, 1093, 1519, 1890
HapII	CCGG	7 cut(s)	564, 689, 713, 990, 1302, 1448, 1791
HhaI	GCGC	2 cut(s)	1089, 1161
Hin6I	GCGC	2 cut(s)	1087, 1159
HinP1I	GCGC	2 cut(s)	1087, 1159
HincII	GTYRAC	2 cut(s)	1551, 1625
HindII	GTYRAC	2 cut(s)	1551, 1625
HindIII	AAGCTT	1 cut(s)	593
HpaI	GTTAAC	1 cut(s)	1551
HpaII	CCGG	7 cut(s)	564, 689, 713, 990, 1302, 1448, 1791
Hpy166II	GTNNAC	5 cut(s)	583, 910, 1551, 1625, 1935
Hpy188III	TCNNGA	7 cut(s)	172, 239, 851, 932, 1749, 1898, 1997
Hpy8I	GTNNAC	5 cut(s)	583, 910, 1551, 1625, 1935
HpyAV	CCTTC	6 cut(s)	28, 829, 955, 1228, 1345, 1790
HpyCH4III	ACNGT	7 cut(s)	425, 638, 1397, 1572, 1675, 1859, 1911
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	9 cut(s)	207, 475, 872, 973, 1372, 1432, 1757, 2012, 2046
HpyF3I	CTNAG	7 cut(s)	60, 132, 240, 378, 489, 1077, 1638
HpySE526I	ACGT	1 cut(s)	8
HspAI	GCGC	2 cut(s)	1087, 1159
Ksp22I	TGATCA	1 cut(s)	1468
KspAI	GTTAAC	1 cut(s)	1551
Kzo9I	GATC	8 cut(s)	55, 235, 463, 640, 975, 1468, 1751, 1784
LguI	GCTCTTC	1 cut(s)	1622
LmnI	GCTCC	3 cut(s)	290, 1376, 1664
Lsp1109I	GCAGC	6 cut(s)	856, 977, 1341, 1618, 1654, 2109
LweI	GCATC	3 cut(s)	376, 559, 1990
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	2 cut(s)	1853, 2048
MalI	GATC	8 cut(s)	57, 237, 465, 642, 977, 1470, 1753, 1786
MboI	GATC	8 cut(s)	55, 235, 463, 640, 975, 1468, 1751, 1784
MflI	RGATCY	3 cut(s)	55, 975, 1751
MhlI	GDGCHC	6 cut(s)	150, 287, 539, 989, 1661, 1992
MlyI	GAGTC	6 cut(s)	11, 219, 364, 370, 602, 701
MmeI	TCCRAC	2 cut(s)	363, 631
MroXI	GAANNNNTTC	1 cut(s)	1699
MseI	TTAA	4 cut(s)	327, 1002, 1155, 1550
MslI	CAYNNNNRTG	2 cut(s)	75, 153
MspI	CCGG	7 cut(s)	564, 689, 713, 990, 1302, 1448, 1791
MspR9I	CCNGG	5 cut(s)	565, 990, 1033, 1118, 1381
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	3 cut(s)	1033, 1118, 1381
MvnI	CGCG	1 cut(s)	1161
NciI	CCSGG	2 cut(s)	565, 990
NdeI	CATATG	1 cut(s)	739
NdeII	GATC	8 cut(s)	55, 235, 463, 640, 975, 1468, 1751, 1784
NlaIV	GGNNCC	6 cut(s)	57, 276, 986, 1054, 1324, 1378
NmeAIII	GCCGAG	6 cut(s)	169, 194, 437, 441, 567, 1801
NmuCI	GTSAC	2 cut(s)	1853, 2048
NspI	RCATGY	5 cut(s)	74, 1198, 1372, 1388, 1954
NspV	TTCGAA	1 cut(s)	815
OliI	CACNNNNGTG	1 cut(s)	153
PaeI	GCATGC	3 cut(s)	74, 1372, 1388
PaeR7I	CTCGAG	1 cut(s)	918
PceI	AGGCCT	1 cut(s)	1519
PciI	ACATGT	1 cut(s)	1950
PciSI	GCTCTTC	1 cut(s)	1622
PctI	GAATGC	1 cut(s)	115
PdmI	GAANNNNTTC	1 cut(s)	1699
PflFI	GACNNNGTC	1 cut(s)	379
PflMI	CCANNNNNTGG	1 cut(s)	567
PfoI	TCCNGGA	1 cut(s)	1031
PkrI	GCNGC	9 cut(s)	549, 871, 967, 1110, 1331, 1608, 1644, 1892, 2099
PleI	GAGTC	6 cut(s)	11, 218, 364, 370, 602, 700
PpsI	GAGTC	6 cut(s)	11, 218, 364, 370, 602, 700
PscI	ACATGT	1 cut(s)	1950
PshBI	ATTAAT	1 cut(s)	327
Psp124BI	GAGCTC	2 cut(s)	287, 1661
Psp6I	CCWGG	3 cut(s)	1031, 1116, 1379
PspFI	CCCAGC	2 cut(s)	602, 1125
PspGI	CCWGG	3 cut(s)	1031, 1116, 1379
PspN4I	GGNNCC	6 cut(s)	57, 276, 986, 1054, 1324, 1378
PspPI	GGNCC	4 cut(s)	136, 158, 686, 848
PspXI	VCTCGAGB	1 cut(s)	918
PstI	CTGCAG	1 cut(s)	209
PstNI	CAGNNNCTG	1 cut(s)	177
PsuI	RGATCY	3 cut(s)	55, 975, 1751
PsyI	GACNNNGTC	1 cut(s)	379
RsaI	GTAC	3 cut(s)	574, 928, 1776
RsaNI	GTAC	3 cut(s)	573, 927, 1775
RseI	CAYNNNNRTG	2 cut(s)	75, 153
SacI	GAGCTC	2 cut(s)	287, 1661
SapI	GCTCTTC	1 cut(s)	1622
SaqAI	TTAA	4 cut(s)	327, 1002, 1155, 1550
SatI	GCNGC	9 cut(s)	548, 870, 966, 1109, 1330, 1607, 1643, 1891, 2098
Sau3AI	GATC	8 cut(s)	55, 235, 463, 640, 975, 1468, 1751, 1784
Sau96I	GGNCC	4 cut(s)	136, 158, 686, 848
ScaI	AGTACT	2 cut(s)	574, 928
SchI	GAGTC	6 cut(s)	11, 219, 364, 370, 602, 701
ScrFI	CCNGG	5 cut(s)	565, 990, 1033, 1118, 1381
SduI	GDGCHC	6 cut(s)	150, 287, 539, 989, 1661, 1992
SfaNI	GCATC	3 cut(s)	376, 559, 1990
SfcI	CTRYAG	1 cut(s)	205
Sfr274I	CTCGAG	1 cut(s)	918
SfuI	TTCGAA	1 cut(s)	815
SinI	GGWCC	1 cut(s)	848
SlaI	CTCGAG	1 cut(s)	918
SmiMI	CAYNNNNRTG	2 cut(s)	75, 153
SmlI	CTYRAG	1 cut(s)	918
SmoI	CTYRAG	1 cut(s)	918
SphI	GCATGC	3 cut(s)	74, 1372, 1388
SseBI	AGGCCT	1 cut(s)	1519
SsiI	CCGC	9 cut(s)	191, 547, 629, 716, 1108, 1200, 1460, 1604, 1891
SstI	GAGCTC	2 cut(s)	287, 1661
StuI	AGGCCT	1 cut(s)	1519
StyD4I	CCNGG	5 cut(s)	563, 988, 1031, 1116, 1379
StyI	CCWWGG	4 cut(s)	114, 1103, 1229, 1318
TaaI	ACNGT	7 cut(s)	425, 638, 1397, 1572, 1675, 1859, 1911
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	7 cut(s)	20, 165, 611, 809, 815, 919, 1996
TaqII	GACCGA	1 cut(s)	1610
TatI	WGTACW	2 cut(s)	572, 926
TauI	GCSGC	3 cut(s)	550, 1111, 1893
Tru1I	TTAA	4 cut(s)	327, 1002, 1155, 1550
Tru9I	TTAA	4 cut(s)	327, 1002, 1155, 1550
TscAI	CASTG	5 cut(s)	295, 1689, 1862, 1983, 2053
TseFI	GTSAC	2 cut(s)	1853, 2048
TseI	GCWGC	6 cut(s)	869, 965, 1329, 1606, 1642, 2097
Tsp45I	GTSAC	2 cut(s)	1853, 2048
TspDTI	ATGAA	7 cut(s)	217, 488, 1036, 1058, 1146, 1842, 1941
TspGWI	ACGGA	1 cut(s)	968
TspRI	CASTG	5 cut(s)	295, 1689, 1862, 1983, 2053
Tth111I	GACNNNGTC	1 cut(s)	379
Van91I	CCANNNNNTGG	1 cut(s)	567
VpaK11BI	GGWCC	1 cut(s)	848
VspI	ATTAAT	1 cut(s)	327
XagI	CCTNNNNNAGG	1 cut(s)	760
XapI	RAATTY	5 cut(s)	654, 811, 1490, 1840, 1966
XceI	RCATGY	5 cut(s)	74, 1198, 1372, 1388, 1954
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 268
XhoI	CTCGAG	1 cut(s)	918
XmiI	GTMKAC	1 cut(s)	1934
XmnI	GAANNNNTTC	1 cut(s)	1699
ZrmI	AGTACT	2 cut(s)	574, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.