Rh1AG060300

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000333
Physical Location & Seq
Forward (+)
9892249 .. 9895825
3577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG060300.1

Sequence Viewer

Length: 261 bp
ATGGTTGCTAAGGAGTTTGGCATACCAGTTCAATTTCAGCGGTTTTGGCTGTGGGCGAAGTGTCAAAACCATACATATCGTCCAAACCGTCCGTTGATTCCCATGAAGGAAACACAACATGTTGGGCAGTTGAGGGAGGTATCAAATAAGGCTCATTACTTCATAATGCAGAACTCAAGTTGTTCTTGGATATTAGCTTGGAAGGGTAATATTGTCTTGCATCTAAAGACTGTAGCTAGAAAGATCTTTGCAGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203
Pfam Domains
Protein Families
MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

86

Amino Acids

10.15

Weight (kDa)

10.3

Isoelectric Point (pI)

26.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
USP7_ICP0_bdg PF12436 13 - 50 2.2e-06 ICP0-binding domain of Ubiquitin-specific protease 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 40
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 1 cut(s) 32
AluBI AGCT 3 cut(s) 197, 236, 254
AluI AGCT 3 cut(s) 197, 236, 254
ApeKI GCWGC 1 cut(s) 251
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 231
BglII AGATCT 1 cut(s) 243
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmsI GCATC 1 cut(s) 229
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 26
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 1 cut(s) 40
BsrI ACTGG 1 cut(s) 26
BssMI GATC 1 cut(s) 243
Bst4CI ACNGT 2 cut(s) 89, 232
BstDEI CTNAG 1 cut(s) 9
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNSI RCATGY 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
CviAII CATG 2 cut(s) 103, 119
CviJI RGCY 5 cut(s) 49, 152, 197, 236, 254
CviKI_1 RGCY 5 cut(s) 49, 152, 197, 236, 254
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
FaeI CATG 2 cut(s) 106, 122
FaiI YATR 6 cut(s) 23, 72, 76, 104, 120, 164
FalI AAGNNNNNCTT 2 cut(s) 169, 201
FatI CATG 2 cut(s) 102, 118
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 1 cut(s) 237
GluI GCNGC 1 cut(s) 252
Hin1II CATG 2 cut(s) 106, 122
HinfI GANTC 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 100, 196
HpyCH4III ACNGT 2 cut(s) 89, 232
HpyCH4V TGCA 3 cut(s) 169, 220, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 2 cut(s) 106, 122
Kzo9I GATC 1 cut(s) 243
LpnPI CCDG 1 cut(s) 39
LweI GCATC 1 cut(s) 229
MaeI CTAG 1 cut(s) 237
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MflI RGATCY 1 cut(s) 243
MluCI AATT 1 cut(s) 32
MnlI CCTC 2 cut(s) 126, 130
MseI TTAA 1 cut(s) 259
MspA1I CMGCKG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 1 cut(s) 243
NlaIII CATG 2 cut(s) 106, 122
NspI RCATGY 1 cut(s) 122
PciI ACATGT 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 85
PfeI GAWTC 1 cut(s) 97
PkrI GCNGC 1 cut(s) 253
PscI ACATGT 1 cut(s) 118
PsuI RGATCY 1 cut(s) 243
SaqAI TTAA 1 cut(s) 259
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 1 cut(s) 243
SetI ASST 4 cut(s) 141, 199, 238, 256
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 231
SgeI CNNG 8 cut(s) 38, 115, 131, 189, 198, 210, 229, 249
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
Sse9I AATT 1 cut(s) 32
SsiI CCGC 1 cut(s) 40
SspI AATATT 1 cut(s) 211
SspMI CTAG 1 cut(s) 237
TaaI ACNGT 2 cut(s) 89, 232
TasI AATT 1 cut(s) 32
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 1 cut(s) 259
Tru9I TTAA 1 cut(s) 259
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 119, 151
TspGWI ACGGA 1 cut(s) 81
XceI RCATGY 1 cut(s) 122
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.