Ubiquitin carboxyl-terminal hydrolase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MATH_2 | PF22486 | 63 - 186 | 3.3e-37 | MATH domain |
| MATH | PF00917 | 75 - 188 | 1.2e-15 | MATH domain |
| UCH | PF00443 | 206 - 527 | 6.6e-60 | Ubiquitin carboxyl-terminal hydrolase |
| UCH_1 | PF13423 | 206 - 481 | 2.1e-14 | Ubiquitin carboxyl-terminal hydrolase |
| USP7_ICP0_bdg | PF12436 | 631 - 883 | 2e-76 | ICP0-binding domain of Ubiquitin-specific protease 7 |
| USP7_C2 | PF14533 | 893 - 1101 | 5.3e-56 | Ubiquitin-specific protease C-terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 867 |
| Acc36I | ACCTGC | 1 cut(s) | 3216 |
| AccB1I | GGYRCC | 1 cut(s) | 957 |
| AccI | GTMKAC | 1 cut(s) | 1876 |
| AccII | CGCG | 1 cut(s) | 1738 |
| AclI | AACGTT | 2 cut(s) | 1201, 1894 |
| AclWI | GGATC | 6 cut(s) | 167, 315, 1800, 2543, 2965, 3007 |
| AcoI | YGGCCR | 2 cut(s) | 1934, 3228 |
| AcsI | RAATTY | 7 cut(s) | 346, 402, 1430, 1544, 2111, 3061, 3172 |
| AcuI | CTGAAG | 6 cut(s) | 647, 764, 1175, 1679, 1725, 2997 |
| AcvI | CACGTG | 1 cut(s) | 455 |
| AcyI | GRCGYC | 1 cut(s) | 864 |
| AfaI | GTAC | 7 cut(s) | 674, 704, 785, 934, 1326, 3129, 3275 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 515, 2363, 2707, 3154, 3283 |
| AflII | CTTAAG | 1 cut(s) | 2828 |
| AgeI | ACCGGT | 1 cut(s) | 608 |
| AhlI | ACTAGT | 1 cut(s) | 794 |
| AjnI | CCWGG | 3 cut(s) | 1519, 2406, 3051 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2028, 2060, 3261, 3293 |
| AleI | CACNNNNGTG | 1 cut(s) | 1365 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 2243, 2275, 2456, 2488 |
| Alw21I | GWGCWC | 5 cut(s) | 1362, 2139, 2655, 2778, 2804 |
| Alw26I | GTCTC | 2 cut(s) | 2853, 3095 |
| Alw44I | GTGCAC | 3 cut(s) | 1358, 2651, 2774 |
| AlwI | GGATC | 6 cut(s) | 167, 315, 1800, 2543, 2965, 3007 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 341 |
| AoxI | GGCC | 5 cut(s) | 1403, 1934, 2048, 2719, 3228 |
| ApaLI | GTGCAC | 3 cut(s) | 1358, 2651, 2774 |
| ApeKI | GCWGC | 6 cut(s) | 34, 37, 40, 43, 856, 2370 |
| ApoI | RAATTY | 7 cut(s) | 346, 402, 1430, 1544, 2111, 3061, 3172 |
| AsiGI | ACCGGT | 1 cut(s) | 608 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2094 |
| AspLEI | GCGC | 3 cut(s) | 1095, 1711, 1738 |
| AspS9I | GGNCC | 3 cut(s) | 107, 2048, 2996 |
| AsuC2I | CCSGG | 1 cut(s) | 2708 |
| AsuHPI | GGTGA | 3 cut(s) | 506, 1115, 3367 |
| AsuII | TTCGAA | 2 cut(s) | 565, 2262 |
| AvaII | GGWCC | 2 cut(s) | 107, 2996 |
| BaeGI | GKGCMC | 5 cut(s) | 960, 1362, 1386, 2655, 2778 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 783, 816 |
| BalI | TGGCCA | 1 cut(s) | 3230 |
| BanI | GGYRCC | 1 cut(s) | 957 |
| BanII | GRGCYC | 2 cut(s) | 1474, 2139 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1488, 1520 |
| BbrPI | CACGTG | 1 cut(s) | 455 |
| BbsI | GAAGAC | 2 cut(s) | 909, 2087 |
| Bbv12I | GWGCWC | 5 cut(s) | 1362, 2139, 2655, 2778, 2804 |
| BbvI | GCAGC | 6 cut(s) | 46, 49, 52, 55, 868, 2382 |
| BccI | CCATC | 3 cut(s) | 742, 825, 2321 |
| BciT130I | CCWGG | 3 cut(s) | 1521, 2408, 3053 |
| BciVI | GTATCC | 1 cut(s) | 270 |
| BclI | TGATCA | 3 cut(s) | 1417, 2941, 3295 |
| BcnI | CCSGG | 1 cut(s) | 2708 |
| BcoDI | GTCTC | 2 cut(s) | 2853, 3095 |
| BcuI | ACTAGT | 1 cut(s) | 794 |
| BfaI | CTAG | 4 cut(s) | 26, 186, 513, 795 |
| BfoI | RGCGCY | 1 cut(s) | 1096 |
| BfrI | CTTAAG | 1 cut(s) | 2828 |
| BfuAI | ACCTGC | 1 cut(s) | 3216 |
| BfuI | GTATCC | 1 cut(s) | 270 |
| Bme1390I | CCNGG | 4 cut(s) | 1521, 2408, 2708, 3053 |
| Bme18I | GGWCC | 2 cut(s) | 107, 2996 |
| BmgT120I | GGNCC | 3 cut(s) | 107, 2048, 2996 |
| BmiI | GGNNCC | 1 cut(s) | 959 |
| BmrFI | CCNGG | 4 cut(s) | 1521, 2408, 2708, 3053 |
| BmrI | ACTGGG | 2 cut(s) | 370, 475 |
| BmsI | GCATC | 8 cut(s) | 66, 145, 753, 826, 990, 1132, 1300, 1821 |
| BmuI | ACTGGG | 2 cut(s) | 370, 475 |
| BpiI | GAAGAC | 2 cut(s) | 909, 2087 |
| BpmI | CTGGAG | 2 cut(s) | 1496, 2058 |
| Bpu14I | TTCGAA | 2 cut(s) | 565, 2262 |
| BpuEI | CTTGAG | 3 cut(s) | 1118, 1979, 2501 |
| BpuMI | CCSGG | 1 cut(s) | 2708 |
| BsaAI | YACGTR | 3 cut(s) | 455, 1586, 2960 |
| BsaHI | GRCGYC | 1 cut(s) | 864 |
| BsaJI | CCNNGG | 8 cut(s) | 291, 631, 1230, 1520, 2181, 2757, 3189, 3277 |
| BsaWI | WCCGGW | 3 cut(s) | 160, 608, 2139 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1469, 1499 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 515, 2363, 2707, 3154, 3283 |
| Bse118I | RCCGGY | 3 cut(s) | 608, 1932, 3352 |
| Bse1I | ACTGG | 5 cut(s) | 376, 470, 587, 1880, 2954 |
| Bse3DI | GCAATG | 2 cut(s) | 755, 1632 |
| BseBI | CCWGG | 3 cut(s) | 1521, 2408, 3053 |
| BseDI | CCNNGG | 8 cut(s) | 291, 631, 1230, 1520, 2181, 2757, 3189, 3277 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 515, 2363, 2707, 3154, 3283 |
| BseMI | GCAATG | 2 cut(s) | 755, 1632 |
| BseMII | CTCAG | 2 cut(s) | 2372, 2881 |
| BseNI | ACTGG | 5 cut(s) | 376, 470, 587, 1880, 2954 |
| BseRI | GAGGAG | 4 cut(s) | 6, 2061, 2637, 3170 |
| BseSI | GKGCMC | 5 cut(s) | 960, 1362, 1386, 2655, 2778 |
| BseXI | GCAGC | 6 cut(s) | 46, 49, 52, 55, 868, 2382 |
| BsgI | GTGCAG | 2 cut(s) | 168, 2982 |
| Bsh1236I | CGCG | 1 cut(s) | 1738 |
| BshFI | GGCC | 5 cut(s) | 1405, 1936, 2050, 2721, 3230 |
| BshNI | GGYRCC | 1 cut(s) | 957 |
| BshTI | ACCGGT | 1 cut(s) | 608 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1362, 2139, 2655, 2778, 2804 |
| BsiSI | CCGG | 7 cut(s) | 161, 609, 1933, 2051, 2140, 2708, 3353 |
| BsiWI | CGTACG | 1 cut(s) | 1324 |
| BslFI | GGGAC | 4 cut(s) | 68, 1238, 2345, 3131 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 515, 2363, 2707, 3154, 3283 |
| BsmAI | GTCTC | 2 cut(s) | 2853, 3095 |
| BsmFI | GGGAC | 4 cut(s) | 68, 1238, 2345, 3131 |
| BsmI | GAATGC | 1 cut(s) | 983 |
| BsnI | GGCC | 5 cut(s) | 1405, 1936, 2050, 2721, 3230 |
| Bsp119I | TTCGAA | 2 cut(s) | 565, 2262 |
| Bsp1286I | GDGCHC | 8 cut(s) | 960, 1362, 1386, 1474, 2139, 2655, 2778, 2804 |
| Bsp1407I | TGTACA | 1 cut(s) | 3127 |
| Bsp19I | CCATGG | 2 cut(s) | 1230, 3189 |
| BspANI | GGCC | 5 cut(s) | 1405, 1936, 2050, 2721, 3230 |
| BspCNI | CTCAG | 2 cut(s) | 2371, 2880 |
| BspFNI | CGCG | 1 cut(s) | 1738 |
| BspHI | TCATGA | 2 cut(s) | 1795, 3001 |
| BspLI | GGNNCC | 1 cut(s) | 959 |
| BspMI | ACCTGC | 1 cut(s) | 3216 |
| BspPI | GGATC | 6 cut(s) | 167, 315, 1800, 2543, 2965, 3007 |
| BspQI | GCTCTTC | 1 cut(s) | 2127 |
| BspT104I | TTCGAA | 2 cut(s) | 565, 2262 |
| BspT107I | GGYRCC | 1 cut(s) | 957 |
| BspTI | CTTAAG | 1 cut(s) | 2828 |
| BsrDI | GCAATG | 2 cut(s) | 755, 1632 |
| BsrFI | RCCGGY | 3 cut(s) | 608, 1932, 3352 |
| BsrGI | TGTACA | 1 cut(s) | 3127 |
| BsrI | ACTGG | 5 cut(s) | 376, 470, 587, 1880, 2954 |
| BssAI | RCCGGY | 3 cut(s) | 608, 1932, 3352 |
| BssECI | CCNNGG | 8 cut(s) | 291, 631, 1230, 1520, 2181, 2757, 3189, 3277 |
| BssNAI | GTATAC | 1 cut(s) | 1877 |
| BssNI | GRCGYC | 1 cut(s) | 864 |
| BssT1I | CCWWGG | 6 cut(s) | 291, 631, 1230, 2757, 3189, 3277 |
| Bst1107I | GTATAC | 1 cut(s) | 1877 |
| Bst2UI | CCWGG | 3 cut(s) | 1521, 2408, 3053 |
| Bst6I | CTCTTC | 8 cut(s) | 1347, 1460, 1494, 1848, 2085, 2127, 2961, 2976 |
| BstACI | GRCGYC | 1 cut(s) | 864 |
| BstAFI | CTTAAG | 1 cut(s) | 2828 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 155 |
| BstAUI | TGTACA | 1 cut(s) | 3127 |
| BstBAI | YACGTR | 3 cut(s) | 455, 1586, 2960 |
| BstBI | TTCGAA | 2 cut(s) | 565, 2262 |
| BstC8I | GCNNGC | 1 cut(s) | 3232 |
| BstDEI | CTNAG | 4 cut(s) | 1146, 1646, 2358, 2867 |
| BstDSI | CCRYGG | 3 cut(s) | 1230, 2181, 3189 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 513 |
| BstFNI | CGCG | 1 cut(s) | 1738 |
| BstH2I | RGCGCY | 1 cut(s) | 1096 |
| BstHHI | GCGC | 3 cut(s) | 1095, 1711, 1738 |
| BstMAI | GTCTC | 2 cut(s) | 2853, 3095 |
| BstNI | CCWGG | 3 cut(s) | 1521, 2408, 3053 |
| BstNSI | RCATGY | 3 cut(s) | 540, 1573, 2647 |
| BstSCI | CCNGG | 4 cut(s) | 1519, 2406, 2706, 3051 |
| BstSLI | GKGCMC | 5 cut(s) | 960, 1362, 1386, 2655, 2778 |
| BstUI | CGCG | 1 cut(s) | 1738 |
| BstV1I | GCAGC | 6 cut(s) | 46, 49, 52, 55, 868, 2382 |
| BstV2I | GAAGAC | 2 cut(s) | 909, 2087 |
| BstX2I | RGATCY | 1 cut(s) | 2970 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 360 |
| BstYI | RGATCY | 1 cut(s) | 2970 |
| BstZ17I | GTATAC | 1 cut(s) | 1877 |
| BsuI | GTATCC | 1 cut(s) | 270 |
| BsuRI | GGCC | 5 cut(s) | 1405, 1936, 2050, 2721, 3230 |
| BtgI | CCRYGG | 3 cut(s) | 1230, 2181, 3189 |
| BtsI | GCAGTG | 1 cut(s) | 156 |
| BtsIMutI | CAGTG | 7 cut(s) | 151, 156, 1369, 1427, 1946, 2802, 3291 |
| BveI | ACCTGC | 1 cut(s) | 3216 |
| Cac8I | GCNNGC | 1 cut(s) | 3232 |
| CaiI | CAGNNNCTG | 1 cut(s) | 341 |
| CciI | TCATGA | 2 cut(s) | 1795, 3001 |
| CfoI | GCGC | 3 cut(s) | 1095, 1711, 1738 |
| Cfr10I | RCCGGY | 3 cut(s) | 608, 1932, 3352 |
| Cfr13I | GGNCC | 3 cut(s) | 107, 2048, 2996 |
| CseI | GACGC | 1 cut(s) | 1904 |
| CsiI | ACCWGGT | 1 cut(s) | 3051 |
| Csp6I | GTAC | 7 cut(s) | 673, 703, 784, 933, 1325, 3128, 3274 |
| CspAI | ACCGGT | 1 cut(s) | 608 |
| CviQI | GTAC | 7 cut(s) | 673, 703, 784, 933, 1325, 3128, 3274 |
| DdeI | CTNAG | 4 cut(s) | 1146, 1646, 2358, 2867 |
| DraI | TTTAAA | 2 cut(s) | 1429, 1543 |
| EaeI | YGGCCR | 2 cut(s) | 1934, 3228 |
| Eam1104I | CTCTTC | 8 cut(s) | 1347, 1460, 1494, 1848, 2085, 2127, 2961, 2976 |
| EarI | CTCTTC | 8 cut(s) | 1347, 1460, 1494, 1848, 2085, 2127, 2961, 2976 |
| EciI | GGCGGA | 2 cut(s) | 9, 289 |
| Ecl136II | GAGCTC | 1 cut(s) | 2137 |
| Eco130I | CCWWGG | 6 cut(s) | 291, 631, 1230, 2757, 3189, 3277 |
| Eco147I | AGGCCT | 1 cut(s) | 2721 |
| Eco24I | GRGCYC | 2 cut(s) | 1474, 2139 |
| Eco32I | GATATC | 1 cut(s) | 2698 |
| Eco47I | GGWCC | 2 cut(s) | 107, 2996 |
| Eco53kI | GAGCTC | 1 cut(s) | 2137 |
| Eco57I | CTGAAG | 6 cut(s) | 647, 764, 1175, 1679, 1725, 2997 |
| Eco72I | CACGTG | 1 cut(s) | 455 |
| EcoICRI | GAGCTC | 1 cut(s) | 2137 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 513 |
| EcoRII | CCWGG | 3 cut(s) | 1519, 2406, 3051 |
| EcoRV | GATATC | 1 cut(s) | 2698 |
| EcoT14I | CCWWGG | 6 cut(s) | 291, 631, 1230, 2757, 3189, 3277 |
| EcoT22I | ATGCAT | 3 cut(s) | 542, 841, 983 |
| EcoT38I | GRGCYC | 2 cut(s) | 1474, 2139 |
| ErhI | CCWWGG | 6 cut(s) | 291, 631, 1230, 2757, 3189, 3277 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1698, 1730, 2082, 2114 |
| FaqI | GGGAC | 4 cut(s) | 68, 1238, 2345, 3131 |
| FauI | CCCGC | 2 cut(s) | 1215, 2919 |
| FauNDI | CATATG | 3 cut(s) | 355, 708, 841 |
| FbaI | TGATCA | 3 cut(s) | 1417, 2941, 3295 |
| FblI | GTMKAC | 1 cut(s) | 1876 |
| FriOI | GRGCYC | 2 cut(s) | 1474, 2139 |
| FspBI | CTAG | 4 cut(s) | 26, 186, 513, 795 |
| GlaI | GCGC | 3 cut(s) | 1094, 1710, 1737 |
| GsuI | CTGGAG | 2 cut(s) | 1496, 2058 |
| HaeII | RGCGCY | 1 cut(s) | 1096 |
| HaeIII | GGCC | 5 cut(s) | 1405, 1936, 2050, 2721, 3230 |
| HapII | CCGG | 7 cut(s) | 161, 609, 1933, 2051, 2140, 2708, 3353 |
| HgaI | GACGC | 1 cut(s) | 1904 |
| HhaI | GCGC | 3 cut(s) | 1095, 1711, 1738 |
| Hin1I | GRCGYC | 1 cut(s) | 864 |
| Hin6I | GCGC | 3 cut(s) | 1093, 1709, 1736 |
| HinP1I | GCGC | 3 cut(s) | 1093, 1709, 1736 |
| HincII | GTYRAC | 1 cut(s) | 1594 |
| HindII | GTYRAC | 1 cut(s) | 1594 |
| HindIII | AAGCTT | 3 cut(s) | 763, 776, 896 |
| HinfI | GANTC | 8 cut(s) | 13, 338, 593, 845, 1013, 2095, 2221, 3331 |
| HpaII | CCGG | 7 cut(s) | 161, 609, 1933, 2051, 2140, 2708, 3353 |
| HphI | GGTGA | 3 cut(s) | 506, 1115, 3367 |
| HpyAV | CCTTC | 8 cut(s) | 490, 947, 1846, 2158, 2409, 2455, 3028, 3240 |
| HpyCH4IV | ACGT | 9 cut(s) | 246, 454, 668, 864, 1201, 1585, 1617, 1894, 2959 |
| HpyF3I | CTNAG | 4 cut(s) | 1146, 1646, 2358, 2867 |
| HpySE526I | ACGT | 9 cut(s) | 246, 454, 668, 864, 1201, 1585, 1617, 1894, 2959 |
| Hsp92I | GRCGYC | 1 cut(s) | 864 |
| HspAI | GCGC | 3 cut(s) | 1093, 1709, 1736 |
| Ksp22I | TGATCA | 3 cut(s) | 1417, 2941, 3295 |
| LguI | GCTCTTC | 1 cut(s) | 2127 |
| LmnI | GCTCC | 9 cut(s) | 163, 635, 1090, 1320, 1540, 1681, 2142, 3260, 3307 |
| Lsp1109I | GCAGC | 6 cut(s) | 46, 49, 52, 55, 868, 2382 |
| LweI | GCATC | 8 cut(s) | 66, 145, 753, 826, 990, 1132, 1300, 1821 |
| MabI | ACCWGGT | 1 cut(s) | 3051 |
| MaeI | CTAG | 4 cut(s) | 26, 186, 513, 795 |
| MaeII | ACGT | 9 cut(s) | 246, 454, 668, 864, 1201, 1585, 1617, 1894, 2959 |
| MfeI | CAATTG | 2 cut(s) | 201, 1031 |
| MflI | RGATCY | 1 cut(s) | 2970 |
| MhlI | GDGCHC | 8 cut(s) | 960, 1362, 1386, 1474, 2139, 2655, 2778, 2804 |
| MlsI | TGGCCA | 1 cut(s) | 3230 |
| MluNI | TGGCCA | 1 cut(s) | 3230 |
| MlyI | GAGTC | 4 cut(s) | 7, 587, 1022, 2230 |
| MmeI | TCCRAC | 6 cut(s) | 117, 238, 598, 1957, 2576, 2856 |
| Mox20I | TGGCCA | 1 cut(s) | 3230 |
| Mph1103I | ATGCAT | 3 cut(s) | 542, 841, 983 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2094 |
| MscI | TGGCCA | 1 cut(s) | 3230 |
| MseI | TTAA | 9 cut(s) | 212, 222, 447, 1428, 1542, 1848, 2724, 2829, 3117 |
| MslI | CAYNNNNRTG | 9 cut(s) | 358, 829, 986, 1365, 1389, 2289, 2502, 2648, 2856 |
| Msp20I | TGGCCA | 1 cut(s) | 3230 |
| MspCI | CTTAAG | 1 cut(s) | 2828 |
| MspI | CCGG | 7 cut(s) | 161, 609, 1933, 2051, 2140, 2708, 3353 |
| MspR9I | CCNGG | 4 cut(s) | 1521, 2408, 2708, 3053 |
| MunI | CAATTG | 2 cut(s) | 201, 1031 |
| Mva1269I | GAATGC | 1 cut(s) | 983 |
| MvaI | CCWGG | 3 cut(s) | 1521, 2408, 3053 |
| MvnI | CGCG | 1 cut(s) | 1738 |
| NciI | CCSGG | 1 cut(s) | 2708 |
| NcoI | CCATGG | 2 cut(s) | 1230, 3189 |
| NdeI | CATATG | 3 cut(s) | 355, 708, 841 |
| NlaIV | GGNNCC | 1 cut(s) | 959 |
| NmuCI | GTSAC | 4 cut(s) | 461, 585, 3312, 3335 |
| NsiI | ATGCAT | 3 cut(s) | 542, 841, 983 |
| NspI | RCATGY | 3 cut(s) | 540, 1573, 2647 |
| NspV | TTCGAA | 2 cut(s) | 565, 2262 |
| OliI | CACNNNNGTG | 1 cut(s) | 1365 |
| PagI | TCATGA | 2 cut(s) | 1795, 3001 |
| PceI | AGGCCT | 1 cut(s) | 2721 |
| PciSI | GCTCTTC | 1 cut(s) | 2127 |
| PctI | GAATGC | 1 cut(s) | 983 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2094 |
| PfeI | GAWTC | 4 cut(s) | 338, 845, 2095, 3331 |
| Pfl23II | CGTACG | 1 cut(s) | 1324 |
| PflFI | GACNNNGTC | 1 cut(s) | 820 |
| PfoI | TCCNGGA | 2 cut(s) | 2406, 2706 |
| PinAI | ACCGGT | 1 cut(s) | 608 |
| PleI | GAGTC | 4 cut(s) | 7, 587, 1021, 2229 |
| PmaCI | CACGTG | 1 cut(s) | 455 |
| PmlI | CACGTG | 1 cut(s) | 455 |
| PpsI | GAGTC | 4 cut(s) | 7, 587, 1021, 2229 |
| Ppu21I | YACGTR | 3 cut(s) | 455, 1586, 2960 |
| Psp124BI | GAGCTC | 1 cut(s) | 2139 |
| Psp1406I | AACGTT | 2 cut(s) | 1201, 1894 |
| Psp6I | CCWGG | 3 cut(s) | 1519, 2406, 3051 |
| PspCI | CACGTG | 1 cut(s) | 455 |
| PspGI | CCWGG | 3 cut(s) | 1519, 2406, 3051 |
| PspLI | CGTACG | 1 cut(s) | 1324 |
| PspN4I | GGNNCC | 1 cut(s) | 959 |
| PspPI | GGNCC | 3 cut(s) | 107, 2048, 2996 |
| PstNI | CAGNNNCTG | 1 cut(s) | 341 |
| PsuI | RGATCY | 1 cut(s) | 2970 |
| PsyI | GACNNNGTC | 1 cut(s) | 820 |
| RsaI | GTAC | 7 cut(s) | 674, 704, 785, 934, 1326, 3129, 3275 |
| RsaNI | GTAC | 7 cut(s) | 673, 703, 784, 933, 1325, 3128, 3274 |
| RseI | CAYNNNNRTG | 9 cut(s) | 358, 829, 986, 1365, 1389, 2289, 2502, 2648, 2856 |
| SacI | GAGCTC | 1 cut(s) | 2139 |
| SapI | GCTCTTC | 1 cut(s) | 2127 |
| SaqAI | TTAA | 9 cut(s) | 212, 222, 447, 1428, 1542, 1848, 2724, 2829, 3117 |
| Sau96I | GGNCC | 3 cut(s) | 107, 2048, 2996 |
| SchI | GAGTC | 4 cut(s) | 7, 587, 1022, 2230 |
| ScrFI | CCNGG | 4 cut(s) | 1521, 2408, 2708, 3053 |
| SduI | GDGCHC | 8 cut(s) | 960, 1362, 1386, 1474, 2139, 2655, 2778, 2804 |
| SexAI | ACCWGGT | 1 cut(s) | 3051 |
| SfaNI | GCATC | 8 cut(s) | 66, 145, 753, 826, 990, 1132, 1300, 1821 |
| SfuI | TTCGAA | 2 cut(s) | 565, 2262 |
| SinI | GGWCC | 2 cut(s) | 107, 2996 |
| SmiI | ATTTAAAT | 1 cut(s) | 1543 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 358, 829, 986, 1365, 1389, 2289, 2502, 2648, 2856 |
| SmlI | CTYRAG | 4 cut(s) | 1097, 1958, 2480, 2828 |
| SmoI | CTYRAG | 4 cut(s) | 1097, 1958, 2480, 2828 |
| SpeI | ACTAGT | 1 cut(s) | 794 |
| SseBI | AGGCCT | 1 cut(s) | 2721 |
| SspI | AATATT | 1 cut(s) | 1556 |
| SspMI | CTAG | 4 cut(s) | 26, 186, 513, 795 |
| SstI | GAGCTC | 1 cut(s) | 2139 |
| StuI | AGGCCT | 1 cut(s) | 2721 |
| StyD4I | CCNGG | 4 cut(s) | 1519, 2406, 2706, 3051 |
| StyI | CCWWGG | 6 cut(s) | 291, 631, 1230, 2757, 3189, 3277 |
| SwaI | ATTTAAAT | 1 cut(s) | 1543 |
| TaiI | ACGT | 9 cut(s) | 249, 457, 671, 867, 1204, 1588, 1620, 1897, 2962 |
| TaqI | TCGA | 7 cut(s) | 317, 565, 1071, 1206, 1942, 2262, 2620 |
| TatI | WGTACW | 2 cut(s) | 783, 3127 |
| TauI | GCSGC | 6 cut(s) | 25, 49, 52, 55, 58, 61 |
| TfiI | GAWTC | 4 cut(s) | 338, 845, 2095, 3331 |
| Tru1I | TTAA | 9 cut(s) | 212, 222, 447, 1428, 1542, 1848, 2724, 2829, 3117 |
| Tru9I | TTAA | 9 cut(s) | 212, 222, 447, 1428, 1542, 1848, 2724, 2829, 3117 |
| TscAI | CASTG | 7 cut(s) | 151, 156, 1369, 1427, 1953, 2809, 3298 |
| TseFI | GTSAC | 4 cut(s) | 461, 585, 3312, 3335 |
| TseI | GCWGC | 6 cut(s) | 34, 37, 40, 43, 856, 2370 |
| Tsp45I | GTSAC | 4 cut(s) | 461, 585, 3312, 3335 |
| TspGWI | ACGGA | 3 cut(s) | 734, 2372, 2684 |
| TspRI | CASTG | 7 cut(s) | 151, 156, 1369, 1427, 1953, 2809, 3298 |
| Tth111I | GACNNNGTC | 1 cut(s) | 820 |
| Vha464I | CTTAAG | 1 cut(s) | 2828 |
| VneI | GTGCAC | 3 cut(s) | 1358, 2651, 2774 |
| VpaK11BI | GGWCC | 2 cut(s) | 107, 2996 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 513 |
| XapI | RAATTY | 7 cut(s) | 346, 402, 1430, 1544, 2111, 3061, 3172 |
| XceI | RCATGY | 3 cut(s) | 540, 1573, 2647 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 148 |
| XmiI | GTMKAC | 1 cut(s) | 1876 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2094 |
| XspI | CTAG | 4 cut(s) | 26, 186, 513, 795 |
| ZraI | GACGTC | 1 cut(s) | 865 |
| Zsp2I | ATGCAT | 3 cut(s) | 542, 841, 983 |