Rroxscaffold_2G00083610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000333
Physical Location & Seq
Forward (+)
6281166 .. 6281417
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00083610.1

Sequence Viewer

Length: 252 bp
ATGGCAACTCTGCCACTTCTCCAGCCGCATGCCGCTACACACCAAAAAACTGGTTCGCACGCTCCTGCAGGCTTGTCGGCGCTACGTGACAAGCGATTGCCTCCCACTCCACCAAGCCGGCGCGTCTCCCTCTCCTCTTCTTTTTGGGCCAGCGTTGCAACCTGGGTCAAGGGCTCGATCACCCTCCTACCCGAGCTTGTGACCTGGGCCGCCCACCGTGCTCTTGCCCCGGATCGGTGGAAGCTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.04

Weight (kDa)

11.72

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 123
AciI CCGC 3 cut(s) 26, 33, 210
AclWI GGATC 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 234
AjnI CCWGG 2 cut(s) 161, 203
AluBI AGCT 2 cut(s) 196, 244
AluI AGCT 2 cut(s) 196, 244
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 1 cut(s) 240
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 2 cut(s) 147, 207
ApeKI GCWGC 1 cut(s) 244
AspLEI GCGC 2 cut(s) 82, 123
AspS9I GGNCC 2 cut(s) 147, 207
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 191
BanII GRGCYC 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 231
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BciT130I CCWGG 2 cut(s) 163, 205
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 130
BfmI CTRYAG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 83
BisI GCNGC 4 cut(s) 26, 33, 210, 245
BlsI GCNGC 4 cut(s) 27, 34, 211, 246
Bme1390I CCNGG 3 cut(s) 163, 205, 230
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 147, 207
BmrFI CCNGG 3 cut(s) 163, 205, 230
BpmI CTGGAG 1 cut(s) 5
BpuMI CCSGG 1 cut(s) 230
BsaAI YACGTR 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 162, 204, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse118I RCCGGY 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 55
BseBI CCWGG 2 cut(s) 163, 205
BseDI CCNNGG 3 cut(s) 162, 204, 228
BseLI CCNNNNNNNGG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 2 cut(s) 149, 209
BsiHKAI GWGCWC 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 2 cut(s) 118, 230
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 130
BsmBI CGTCTC 1 cut(s) 130
BsnI GGCC 2 cut(s) 149, 209
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 176, 223
Bsp143I GATC 2 cut(s) 177, 232
BspACI CCGC 3 cut(s) 26, 33, 210
BspANI GGCC 2 cut(s) 149, 209
BspFNI CGCG 1 cut(s) 123
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 1 cut(s) 240
BsrFI RCCGGY 1 cut(s) 117
BsrI ACTGG 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 117
BssECI CCNNGG 3 cut(s) 162, 204, 228
BssMI GATC 2 cut(s) 177, 232
Bst2UI CCWGG 2 cut(s) 163, 205
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 142
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 5 cut(s) 30, 60, 70, 119, 151
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 2 cut(s) 82, 123
BstKTI GATC 2 cut(s) 180, 235
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 2 cut(s) 177, 232
BstMWI GCNNNNNNNGC 2 cut(s) 155, 218
BstNI CCWGG 2 cut(s) 163, 205
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 3 cut(s) 161, 203, 228
BstSFI CTRYAG 1 cut(s) 66
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 50
BsuRI GGCC 2 cut(s) 149, 209
Cac8I GCNNGC 5 cut(s) 30, 60, 70, 119, 151
CfoI GCGC 2 cut(s) 82, 123
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 2 cut(s) 147, 207
CseI GACGC 1 cut(s) 112
CviAII CATG 1 cut(s) 29
CviJI RGCY 8 cut(s) 25, 72, 117, 149, 174, 196, 209, 244
CviKI_1 RGCY 8 cut(s) 25, 72, 117, 149, 174, 196, 209, 244
DpnI GATC 2 cut(s) 179, 234
DpnII GATC 2 cut(s) 177, 232
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 161, 203
EcoT38I GRGCYC 1 cut(s) 176
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 1 cut(s) 32
FaiI YATR 1 cut(s) 30
FatI CATG 1 cut(s) 28
Fnu4HI GCNGC 4 cut(s) 26, 33, 210, 245
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 4 cut(s) 26, 33, 210, 245
GlaI GCGC 2 cut(s) 81, 122
GluI GCNGC 4 cut(s) 26, 33, 210, 245
GsuI CTGGAG 1 cut(s) 5
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 2 cut(s) 149, 209
HapII CCGG 2 cut(s) 118, 230
HgaI GACGC 1 cut(s) 112
HhaI GCGC 2 cut(s) 82, 123
Hin1II CATG 1 cut(s) 32
Hin6I GCGC 2 cut(s) 80, 121
HinP1I GCGC 2 cut(s) 80, 121
HpaII CCGG 2 cut(s) 118, 230
HphI GGTGA 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 3 cut(s) 68, 158, 247
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 218
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 1 cut(s) 32
HspAI GCGC 2 cut(s) 80, 121
KroI GCCGGC 1 cut(s) 117
KroNI GCCGGC 1 cut(s) 119
Kzo9I GATC 2 cut(s) 177, 232
LmnI GCTCC 1 cut(s) 67
Lsp1109I GCAGC 1 cut(s) 231
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 2 cut(s) 86, 199
MalI GATC 2 cut(s) 179, 234
MboI GATC 2 cut(s) 177, 232
MboII GAAGA 1 cut(s) 129
MhlI GDGCHC 2 cut(s) 176, 223
MnlI CCTC 4 cut(s) 111, 140, 145, 194
MroNI GCCGGC 1 cut(s) 117
MspI CCGG 2 cut(s) 118, 230
MspR9I CCNGG 3 cut(s) 163, 205, 230
MvaI CCWGG 2 cut(s) 163, 205
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 155, 218
NaeI GCCGGC 1 cut(s) 119
NciI CCSGG 1 cut(s) 230
NdeII GATC 2 cut(s) 177, 232
NgoMIV GCCGGC 1 cut(s) 117
NlaIII CATG 1 cut(s) 32
NmuCI GTSAC 2 cut(s) 86, 199
NspI RCATGY 1 cut(s) 32
PaeI GCATGC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 91
PdiI GCCGGC 1 cut(s) 119
PkrI GCNGC 4 cut(s) 27, 34, 211, 246
Ppu21I YACGTR 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 161, 203
PspGI CCWGG 2 cut(s) 161, 203
PspPI GGNCC 2 cut(s) 147, 207
PstI CTGCAG 1 cut(s) 70
SatI GCNGC 4 cut(s) 26, 33, 210, 245
Sau3AI GATC 2 cut(s) 177, 232
Sau96I GGNCC 2 cut(s) 147, 207
SbfI CCTGCAGG 1 cut(s) 70
ScrFI CCNGG 3 cut(s) 163, 205, 230
SdaI CCTGCAGG 1 cut(s) 70
SduI GDGCHC 2 cut(s) 176, 223
SetI ASST 5 cut(s) 88, 164, 198, 206, 246
SfcI CTRYAG 1 cut(s) 66
SphI GCATGC 1 cut(s) 32
Sse8387I CCTGCAGG 1 cut(s) 70
SsiI CCGC 3 cut(s) 26, 33, 210
StyD4I CCNGG 3 cut(s) 161, 203, 228
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 176
TauI GCSGC 3 cut(s) 28, 35, 212
TseFI GTSAC 2 cut(s) 86, 199
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 2 cut(s) 86, 199
XceI RCATGY 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.