Rroxscaffold_2G00084480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000333
Physical Location & Seq
Forward (+)
7004563 .. 7014661
10099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084480.1

Sequence Viewer

Length: 648 bp
ATGGAAGTAATGCCGGAAACCACTCCTGTTACCCCTCATCAGCAGGTGCACATGTCATCTCGGATCGTTTCTCGATCCAAATCTTGGCGGGTCTTCCTTGGGGAACCCGATGGCGACGAAGACTTAAGGTGGTTGAGGTTGAGGTCGGCGGTGGTGCGGTGGAGGAAGAAGGCTGCGGGAGACGAGCTCGTCGGCCCAAGCTTCAAGATCTGCCGATTTGTGGACTGTTGGCTTCACATTTTCAAGGCTCCCAATGGCTACAAGCCACGTCACCCACCCACATTCCACAACTTGACCAAATCCCCACTCCCACGCGCTGCAGCCTTGTTTCCGCTAGAGGACAAGCGATTGCCATGCAATTTTGGGTCCTGGCGCGTCTCCCCTCTCCTCTTCTTTTTGGGCCGAGTGGCAACCTGGGTCACGGGCTCGGTCACCCTCTTACCCGAGCTTGTGACCTGGGCTGTCCACCGTGCTCTTGCCCCAGATCCGGTGGAAGCTGCAATAGTGAGTTTTTGGTGTCCCAAGCTACAAAACCGACGTGGTGCCCGGCAAAACGAGCCCGAGAGCGCGCGCGAGAATTTTTTTCAAACCGTACAGCATGAAGAAACCAGCTCCATATGTGGGTTTCTCGATGAGAGAGTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.68

Weight (kDa)

9.61

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 34
AasI GACNNNNNNGTC 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 34
AccB1I GGYRCC 1 cut(s) 542
AccB7I CCANNNNNTGG 1 cut(s) 84
AccII CGCG 5 cut(s) 315, 375, 569, 571, 573
AciI CCGC 5 cut(s) 88, 149, 157, 176, 332
AclWI GGATC 3 cut(s) 69, 71, 479
AcsI RAATTY 1 cut(s) 577
AfaI GTAC 1 cut(s) 594
AfiI CCNNNNNNNGG 4 cut(s) 84, 220, 487, 621
AflII CTTAAG 1 cut(s) 124
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 3 cut(s) 205, 244, 587
AjiI CACGTC 2 cut(s) 269, 539
AjnI CCWGG 3 cut(s) 368, 413, 455
AluBI AGCT 6 cut(s) 187, 201, 448, 497, 526, 612
AluI AGCT 6 cut(s) 187, 201, 448, 497, 526, 612
Alw21I GWGCWC 3 cut(s) 51, 189, 475
Alw26I GTCTC 2 cut(s) 174, 382
Alw44I GTGCAC 1 cut(s) 47
AlwI GGATC 3 cut(s) 69, 71, 479
Ama87I CYCGRG 2 cut(s) 443, 560
AoxI GGCC 2 cut(s) 193, 400
ApaLI GTGCAC 1 cut(s) 47
ApeKI GCWGC 4 cut(s) 173, 317, 320, 497
ApoI RAATTY 1 cut(s) 577
AspLEI GCGC 5 cut(s) 317, 375, 569, 571, 573
AspS9I GGNCC 3 cut(s) 194, 366, 400
AsuC2I CCSGG 1 cut(s) 547
AsuHPI GGTGA 2 cut(s) 263, 424
AvaI CYCGRG 2 cut(s) 443, 560
AvaII GGWCC 1 cut(s) 366
BaeGI GKGCMC 2 cut(s) 51, 547
BanI GGYRCC 1 cut(s) 542
BanII GRGCYC 3 cut(s) 189, 428, 561
BbsI GAAGAC 2 cut(s) 85, 126
Bbv12I GWGCWC 3 cut(s) 51, 189, 475
BbvI GCAGC 4 cut(s) 160, 304, 332, 484
BccI CCATC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 336, 370
BciT130I CCWGG 3 cut(s) 370, 415, 457
BcnI CCSGG 1 cut(s) 547
BcoDI GTCTC 2 cut(s) 174, 382
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 318
BfrI CTTAAG 1 cut(s) 124
BfuAI ACCTGC 1 cut(s) 34
BglII AGATCT 1 cut(s) 207
BisI GCNGC 4 cut(s) 174, 318, 321, 498
BlsI GCNGC 4 cut(s) 175, 319, 322, 499
Bme1390I CCNGG 4 cut(s) 370, 415, 457, 547
Bme18I GGWCC 1 cut(s) 366
BmeT110I CYCGRG 2 cut(s) 443, 560
BmgBI CACGTC 2 cut(s) 269, 539
BmgT120I GGNCC 3 cut(s) 194, 366, 400
BmiI GGNNCC 4 cut(s) 105, 249, 367, 544
BmrFI CCNGG 4 cut(s) 370, 415, 457, 547
BpiI GAAGAC 2 cut(s) 85, 126
BplI GAGNNNNNCTC 2 cut(s) 171, 203
BpuMI CCSGG 1 cut(s) 547
BsaBI GATNNNNATC 1 cut(s) 79
BsaJI CCNNGG 3 cut(s) 97, 414, 456
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 220, 487, 621
Bse8I GATNNNNATC 1 cut(s) 79
BseBI CCWGG 3 cut(s) 370, 415, 457
BseDI CCNNGG 3 cut(s) 97, 414, 456
BseJI GATNNNNATC 1 cut(s) 79
BseLI CCNNNNNNNGG 4 cut(s) 84, 220, 487, 621
BsePI GCGCGC 2 cut(s) 567, 569
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 2 cut(s) 51, 547
BseXI GCAGC 4 cut(s) 160, 304, 332, 484
Bsh1236I CGCG 5 cut(s) 315, 375, 569, 571, 573
BshFI GGCC 2 cut(s) 195, 402
BshNI GGYRCC 1 cut(s) 542
BsiHKAI GWGCWC 3 cut(s) 51, 189, 475
BsiHKCI CYCGRG 2 cut(s) 443, 560
BsiSI CCGG 3 cut(s) 14, 488, 547
BslFI GGGAC 1 cut(s) 504
BslI CCNNNNNNNGG 4 cut(s) 84, 220, 487, 621
BsmAI GTCTC 2 cut(s) 174, 382
BsmBI CGTCTC 2 cut(s) 174, 382
BsmFI GGGAC 1 cut(s) 504
BsnI GGCC 2 cut(s) 195, 402
BsoBI CYCGRG 2 cut(s) 443, 560
Bsp1286I GDGCHC 6 cut(s) 51, 189, 428, 475, 547, 561
Bsp143I GATC 4 cut(s) 63, 74, 207, 484
BspACI CCGC 5 cut(s) 88, 149, 157, 176, 332
BspANI GGCC 2 cut(s) 195, 402
BspFNI CGCG 5 cut(s) 315, 375, 569, 571, 573
BspLI GGNNCC 4 cut(s) 105, 249, 367, 544
BspMAI CTGCAG 1 cut(s) 322
BspMI ACCTGC 1 cut(s) 34
BspPI GGATC 3 cut(s) 69, 71, 479
BspT107I GGYRCC 1 cut(s) 542
BspTI CTTAAG 1 cut(s) 124
BssECI CCNNGG 3 cut(s) 97, 414, 456
BssHII GCGCGC 2 cut(s) 567, 569
BssMI GATC 4 cut(s) 63, 74, 207, 484
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 3 cut(s) 370, 415, 457
Bst4CI ACNGT 3 cut(s) 227, 470, 592
Bst6I CTCTTC 1 cut(s) 395
BstAFI CTTAAG 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 569, 571
BstEII GGTNACC 1 cut(s) 430
BstFNI CGCG 5 cut(s) 315, 375, 569, 571, 573
BstHHI GCGC 5 cut(s) 317, 375, 569, 571, 573
BstKTI GATC 4 cut(s) 66, 77, 210, 487
BstMAI GTCTC 2 cut(s) 174, 382
BstMBI GATC 4 cut(s) 63, 74, 207, 484
BstMWI GCNNNNNNNGC 1 cut(s) 556
BstNI CCWGG 3 cut(s) 370, 415, 457
BstNSI RCATGY 1 cut(s) 55
BstPI GGTNACC 1 cut(s) 430
BstSCI CCNGG 4 cut(s) 368, 413, 455, 545
BstSFI CTRYAG 1 cut(s) 318
BstSLI GKGCMC 2 cut(s) 51, 547
BstUI CGCG 5 cut(s) 315, 375, 569, 571, 573
BstV1I GCAGC 4 cut(s) 160, 304, 332, 484
BstV2I GAAGAC 2 cut(s) 85, 126
BstX2I RGATCY 2 cut(s) 207, 484
BstYI RGATCY 2 cut(s) 207, 484
BsuRI GGCC 2 cut(s) 195, 402
BtrI CACGTC 2 cut(s) 269, 539
BveI ACCTGC 1 cut(s) 34
Cac8I GCNNGC 2 cut(s) 569, 571
CfoI GCGC 5 cut(s) 317, 375, 569, 571, 573
Cfr13I GGNCC 3 cut(s) 194, 366, 400
CseI GACGC 1 cut(s) 364
Csp6I GTAC 1 cut(s) 593
CviAII CATG 3 cut(s) 52, 354, 599
CviQI GTAC 1 cut(s) 593
DpnI GATC 4 cut(s) 65, 76, 209, 486
DpnII GATC 4 cut(s) 63, 74, 207, 484
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 97
Eco24I GRGCYC 3 cut(s) 189, 428, 561
Eco47I GGWCC 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 187
Eco88I CYCGRG 2 cut(s) 443, 560
Eco91I GGTNACC 1 cut(s) 430
EcoICRI GAGCTC 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 366
EcoO65I GGTNACC 1 cut(s) 430
EcoRII CCWGG 3 cut(s) 368, 413, 455
EcoT14I CCWWGG 1 cut(s) 97
EcoT38I GRGCYC 3 cut(s) 189, 428, 561
ErhI CCWWGG 1 cut(s) 97
Esp3I CGTCTC 2 cut(s) 174, 382
FaeI CATG 3 cut(s) 55, 357, 602
FaiI YATR 5 cut(s) 53, 355, 600, 617, 619
FaqI GGGAC 1 cut(s) 504
FatI CATG 3 cut(s) 51, 353, 598
FauI CCCGC 2 cut(s) 81, 169
FauNDI CATATG 1 cut(s) 617
Fnu4HI GCNGC 4 cut(s) 174, 318, 321, 498
FriOI GRGCYC 3 cut(s) 189, 428, 561
Fsp4HI GCNGC 4 cut(s) 174, 318, 321, 498
FspBI CTAG 1 cut(s) 335
GlaI GCGC 5 cut(s) 316, 374, 568, 570, 572
GluI GCNGC 4 cut(s) 174, 318, 321, 498
HaeIII GGCC 2 cut(s) 195, 402
HapII CCGG 3 cut(s) 14, 488, 547
HgaI GACGC 1 cut(s) 364
HhaI GCGC 5 cut(s) 317, 375, 569, 571, 573
Hin1II CATG 3 cut(s) 55, 357, 602
Hin6I GCGC 5 cut(s) 315, 373, 567, 569, 571
HinP1I GCGC 5 cut(s) 315, 373, 567, 569, 571
HindIII AAGCTT 1 cut(s) 199
HpaII CCGG 3 cut(s) 14, 488, 547
HphI GGTGA 2 cut(s) 263, 424
Hpy166II GTNNAC 3 cut(s) 49, 223, 466
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 3 cut(s) 72, 205, 629
Hpy8I GTNNAC 3 cut(s) 49, 223, 466
Hpy99I CGWCG 3 cut(s) 119, 194, 540
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 3 cut(s) 227, 470, 592
HpyCH4IV ACGT 2 cut(s) 268, 538
HpyCH4V TGCA 4 cut(s) 49, 320, 357, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 556
HpySE526I ACGT 2 cut(s) 268, 538
Hsp92II CATG 3 cut(s) 55, 357, 602
HspAI GCGC 5 cut(s) 315, 373, 567, 569, 571
Kzo9I GATC 4 cut(s) 63, 74, 207, 484
LmnI GCTCC 2 cut(s) 253, 617
Lsp1109I GCAGC 4 cut(s) 160, 304, 332, 484
MaeI CTAG 1 cut(s) 335
MaeII ACGT 2 cut(s) 268, 538
MaeIII GTNAC 5 cut(s) 28, 269, 418, 430, 451
MalI GATC 4 cut(s) 65, 76, 209, 486
MauBI CGCGCGCG 1 cut(s) 569
MboI GATC 4 cut(s) 63, 74, 207, 484
MboII GAAGA 5 cut(s) 85, 131, 178, 382, 614
MflI RGATCY 2 cut(s) 207, 484
MhlI GDGCHC 6 cut(s) 51, 189, 428, 475, 547, 561
MluCI AATT 2 cut(s) 358, 577
MnlI CCTC 8 cut(s) 45, 129, 135, 156, 331, 393, 398, 446
MseI TTAA 1 cut(s) 125
MspCI CTTAAG 1 cut(s) 124
MspI CCGG 3 cut(s) 14, 488, 547
MspR9I CCNGG 4 cut(s) 370, 415, 457, 547
MvaI CCWGG 3 cut(s) 370, 415, 457
MvnI CGCG 5 cut(s) 315, 375, 569, 571, 573
MwoI GCNNNNNNNGC 1 cut(s) 556
NciI CCSGG 1 cut(s) 547
NdeI CATATG 1 cut(s) 617
NdeII GATC 4 cut(s) 63, 74, 207, 484
NlaIII CATG 3 cut(s) 55, 357, 602
NlaIV GGNNCC 4 cut(s) 105, 249, 367, 544
NmeAIII GCCGAG 1 cut(s) 428
NmuCI GTSAC 4 cut(s) 269, 418, 430, 451
NspI RCATGY 1 cut(s) 55
PaqCI CACCTGC 1 cut(s) 34
PauI GCGCGC 2 cut(s) 567, 569
PciI ACATGT 1 cut(s) 51
PflMI CCANNNNNTGG 1 cut(s) 84
PkrI GCNGC 4 cut(s) 175, 319, 322, 499
PpuMI RGGWCCY 1 cut(s) 366
PscI ACATGT 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 366
Psp6I CCWGG 3 cut(s) 368, 413, 455
PspEI GGTNACC 1 cut(s) 430
PspGI CCWGG 3 cut(s) 368, 413, 455
PspN4I GGNNCC 4 cut(s) 105, 249, 367, 544
PspPI GGNCC 3 cut(s) 194, 366, 400
PspPPI RGGWCCY 1 cut(s) 366
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 2 cut(s) 207, 484
PteI GCGCGC 2 cut(s) 567, 569
RsaI GTAC 1 cut(s) 594
RsaNI GTAC 1 cut(s) 593
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 4 cut(s) 174, 318, 321, 498
Sau3AI GATC 4 cut(s) 63, 74, 207, 484
Sau96I GGNCC 3 cut(s) 194, 366, 400
ScrFI CCNGG 4 cut(s) 370, 415, 457, 547
SduI GDGCHC 6 cut(s) 51, 189, 428, 475, 547, 561
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 2 cut(s) 358, 577
SsiI CCGC 5 cut(s) 88, 149, 157, 176, 332
SspMI CTAG 1 cut(s) 335
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 4 cut(s) 368, 413, 455, 545
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 3 cut(s) 227, 470, 592
TaiI ACGT 2 cut(s) 271, 541
TaqI TCGA 2 cut(s) 73, 630
TaqII GACCGA 1 cut(s) 418
TasI AATT 2 cut(s) 358, 577
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseFI GTSAC 4 cut(s) 269, 418, 430, 451
TseI GCWGC 4 cut(s) 173, 317, 320, 497
Tsp45I GTSAC 4 cut(s) 269, 418, 430, 451
TspDTI ATGAA 1 cut(s) 615
Van91I CCANNNNNTGG 1 cut(s) 84
Vha464I CTTAAG 1 cut(s) 124
VneI GTGCAC 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 366
XapI RAATTY 1 cut(s) 577
XceI RCATGY 1 cut(s) 55
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.