MD12G1047900.v1.1

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
5450987 .. 5461589
10603 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1047900.v1.1.491

Sequence Viewer

Length: 3300 bp
ATGACTATGATGACTCCTGCACCGTTGGATCAGCAGCAAGAGGACGAAGAGATGCTTGTGCCGAACTCGGATTTGGTCGAAGGTCCTCAGCCAATGGAAGCCCAAGTGGAGCCAGCTAGTACAGTTGATAGTCAACCAGTGGAGGATCCTCCAACGATGAAATTCACTTGGACAATTGAGAACTTTACTAGGTTGAACATCAAGAAGCACTACTCTGACATGTTCGTAGTGGGCGGCTATAAATGGCGGATACTAATATTTCCCAAGGGAAACAATGTGGACTACTTGTCAATGTATTTGGATGTGGCAGATTCCGGGACATTGCCATATGGGTGGAGTAGATATGCACACTTCAGCTTGGCTGTAGTTAATCATATCCATACCAAGTACTCAATAAGAAAGGACACTCAGCACCAATTCAATGCAAGAGAAAGTGACTGGGGATTCACTTCATTCATGCCTCTTGGTGATCTTTATGATCCGAGTAGGGGATATCTGGTGAACGATACAGTTGTGGTTGAAGCTGAGGTTGCTGTCCGTAAGGTTCTAGATTACTGGTCATATGACTCGAAAAAGGAAACTGGTTATGTTGGGCTCAAGAATCAGGGAGCAACTTGTTATATGAATTCTCTTCTCCAGACTTTGTACCATATACCGTACTTCAGAAAGGCCGTGTATCATATGCCAACAACTGAGAATGACATGCCTTCAGGAAGCATCCCTTTGGCGCTACAAAGTTTATTCTATAAGCTTCAATACAATGACAGCAGTGTTGCAACCAAAGAATTGACCAAATCCTTTGGATGGGATACATATGATTCTTTTATGCAACATGATGTGCAGGAACTTAATAGAGTTCTTTGTGAAAAGCTTGAAGATAAAATGAAGGGAACTGTTGTGGAGGGTACAATACAGCAGTTGTTTGAAGGACATCACATGAATTACATTGAATGCATCAATGTGGATTACAAATCTACAAGAAAGGAATCATTTTATGACCTACAGCTTGATGTGAAAGGCTGTCGGGATGTTTATGCTTCTTTTGACAAGTATGTGGAAGTTGAACGTCTTGAGGGTGACAATAAATACCATGCCGAAGAACATGGTTTGCAGGATGCTAAGAAGGGTGTTCTGTTTATTGACTTCCCTCCCGTTCTTCAACTTCAGCTAAAGCGATTTGAATATGATTTTATGCGGGACACTATGGTTAAGATAAATGATCGCTATGAATTTCCTCTTCAACTTGACCTTGATAGGGAGAATGGAAAATATCTATCACCTGAATCAGATAAGAGTGTTCGCAACCTCTACACTCTTCATAGTGTCTTGGTGCATAGTGGTGGGGTGCATGGTGGCCATTACTATGCTTTCATCAGACCAACCCTCTCAGACCAGTGGTACAAATTTGATGATGAACGTGTGACAAAAGAGGATGTGAAGAGGGCTTTAGAAGAGCAGTACGGTGGTGAGGAAGAGTTGCCACAGACCAATCCTGGCTTCAATAATACTCCTTTCAAATTTACAAAATACTCAAATGCATACATGCTTGTGTATATACGGGACAGTGATAAGGACAAAATAATATGTAACGTGGATGAGAAAGACATAGCCGAACATCTAAGGATAAGGTTGAAGAAAGAACAAGAAGAGAAAGAGGACAAAAGGAAATATAAGGCACAAGCACACCTCTACACTATTATTAAGGTTGCTCGAGATGAGGATCTGACAGAACAAATTGGAAGGGATATTTATTTTGACCTAGTGGACCATGACAAAGTTCGTAATTTCCGTGTTCAGAAACAAATGCCCTTTAATCTTTTCAAGGAGGAGGTTGCGAAAGAGTTTGGCATACCAGTGCAGTTTCAGCGTTTCTGGATTTGGGCCAAGAGACAAAACCACACATATCGCCCCAACCGACCATTGACACCTCAGGAAGAAACACAATCAGTTGGACACTTGAGAGAGGTATCAAATAAAACACACAATGCAGAGCTAAAGTTGTTTCTGGAAGTAGAGTTTGGGCCGGATCTACGTCCTATTCCTCCGCCTGACAAAACCAAGGAAGATATCCTTCTTTTCTTTAAGCTTTATGAGCCTGAGAAACGAGAACTACGGAAAAAATTAAATCAACTGGCTGGTTTTACCCCTGATGAAGAAATTGAGCTTTATGAGGAAATAAAGTTTGAGCCATGTATCATGTGCGAACATCTTGACAAGAAGACCTCATTTCGATCGAGTCAGATTGAAGATGGGGATATTATTTGCTTTCAGAAGTCTACTCCTCTTGAAAGTGAAGAAGAATGTAAATATCCTGATGTTCCTTCATTTTTGGAATACGTACACAATCGCCAGGTTGTTCATTTCCGTTCTTTGGAGAAACCTAAGGAGGAGGATTTCAGTTTAGAATTGTCAAAGCTACACACTTACGATGATGTGGTGGAGAAATTGGCTCGCCAAATTGGTTTGGAAGATCCCACCAAAATCAGACTCACTGCACATAACTGCTATTCTCAGCAACCTAAGCCCCAACCAATTAAATTTCGGGGCGTAGAGCATTTAACTGATATGTTAGTTCATTACAATCAAAGCTCTGATATTTTGTATTATGAAGTCTTGGACATCCCCCTGCCAGAATTGCAAGGCCTAAAAAATCTAAAAGTTGCTTTTCATCATGCTACAAAAGATGAGGTGGTGATTCACAATATTAGATTGCCCAAACAGAGCACTGTGGGGGATGTCATTAATGTACTTAAAACGAAGGTAGAGCTGTCTCATCCAAATGCAGAACTCCGACTGCTTGAGGTTTTCTATCACAAGATTTACAAGATCTTCCCACACAGTGAGAAAATTGAGAATATAAATGACCAGTACTGGACTTTGCGTGCAGAGGAGATTCCAGAAGAAGAGAAAAACTTGGGTCCCCATGATCGCTTGATTCATGTTTACCACTTTACAAAAGACACTGCACAGAACCAGATGCAAGTACAAAATTTTGGGGAACCTTTCTTCTTGGTCATCCATGAAGGTGAAACTTTAGCTGAAGTTAAAGAACGGATACAAAAGAAATTGCAGGTCCCCGATGAGGAGTTTGCCAAGTGGAAGTTTGCTTTCTTGTCACTTGGTCGTCCTGAGTACTTGCAGGATTCTGATGTTGTGTCCAGCCGTTTTCAGAGAAGAGATGTTTATGGTGCATGGGAGCAGTACCTTGGGTTGGAGCACTCTGATAATGCTCCTAAGAGAGCGTATGCAGTAAATCAGAACCGTCACACGTACGAGAAGCCAGTTAAAATATACAACTAA

Protein Analysis

1100

Amino Acids

129.3

Weight (kDa)

5.59

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 54 - 177 3.6e-37 MATH domain
MATH PF00917 59 - 179 1.1e-16 MATH domain
UCH PF00443 197 - 518 5.6e-60 Ubiquitin carboxyl-terminal hydrolase
UCH_1 PF13423 197 - 472 7.3e-15 Ubiquitin carboxyl-terminal hydrolase
USP7_ICP0_bdg PF12436 622 - 705 1e-18 ICP0-binding domain of Ubiquitin-specific protease 7
USP7_ICP0_bdg PF12436 703 - 857 9.6e-45 ICP0-binding domain of Ubiquitin-specific protease 7
USP7_C2 PF14533 867 - 1077 1.9e-57 Ubiquitin-specific protease C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 3061
AccI GTMKAC 1 cut(s) 2276
AciI CCGC 4 cut(s) 234, 247, 1195, 2045
AclWI GGATC 7 cut(s) 36, 140, 153, 473, 1728, 2034, 2465
AcoI YGGCCR 1 cut(s) 1354
AcsI RAATTY 7 cut(s) 161, 625, 1229, 1403, 1517, 2537, 2989
AcuI CTGAAG 5 cut(s) 337, 646, 693, 1148, 3060
AdeI CACNNNGTG 1 cut(s) 2840
AfiI CCNNNNNNNGG 6 cut(s) 488, 804, 1255, 2371, 3082, 3211
AflIII ACRYGT 3 cut(s) 219, 1417, 3267
AhdI GACNNNNNGTC 1 cut(s) 286
AjnI CCWGG 2 cut(s) 1492, 2349
AjuI GAANNNNNNNTTGG 6 cut(s) 56, 88, 1481, 1513, 2001, 2033
Alw21I GWGCWC 2 cut(s) 2726, 3219
Alw26I GTCTC 2 cut(s) 1882, 2775
AlwI GGATC 7 cut(s) 36, 140, 153, 473, 1728, 2034, 2465
Ama87I CYCGRG 1 cut(s) 1710
AoxI GGCC 5 cut(s) 669, 1354, 1881, 2021, 2641
ApeKI GCWGC 1 cut(s) 34
ApoI RAATTY 7 cut(s) 161, 625, 1229, 1403, 1517, 2537, 2989
AseI ATTAAT 1 cut(s) 2742
AspLEI GCGC 1 cut(s) 730
AspS9I GGNCC 6 cut(s) 83, 1765, 1881, 2021, 2918, 3073
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 7 cut(s) 479, 511, 1088, 1269, 1478, 2704, 3038
AvaI CYCGRG 1 cut(s) 1710
AvaII GGWCC 4 cut(s) 83, 1765, 2918, 3073
AxyI CCTNAGG 2 cut(s) 1929, 2382
BaeI ACNNNNGTAYC 2 cut(s) 498, 531
BalI TGGCCA 1 cut(s) 1356
BamHI GGATCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 597
BbsI GAAGAC 1 cut(s) 2225
Bbv12I GWGCWC 2 cut(s) 2726, 3219
BbvCI CCTCAGC 2 cut(s) 87, 525
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 798, 2243
BceAI ACGGC 2 cut(s) 656, 3147
BciT130I CCWGG 2 cut(s) 1494, 2351
BciVI GTATCC 3 cut(s) 243, 802, 3048
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 2 cut(s) 1882, 2775
BfaI CTAG 4 cut(s) 117, 189, 548, 1760
BfmI CTRYAG 2 cut(s) 363, 1001
BfoI RGCGCY 1 cut(s) 731
BfuAI ACCTGC 1 cut(s) 3061
BfuI GTATCC 3 cut(s) 243, 802, 3048
BglII AGATCT 1 cut(s) 2826
BisI GCNGC 2 cut(s) 35, 235
BlsI GCNGC 2 cut(s) 36, 236
BmcAI AGTACT 3 cut(s) 389, 2870, 3134
Bme1390I CCNGG 3 cut(s) 316, 1494, 2351
Bme18I GGWCC 4 cut(s) 83, 1765, 2918, 3073
BmeRI GACNNNNNGTC 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 1710
BmgT120I GGNCC 6 cut(s) 83, 1765, 1881, 2021, 2918, 3073
BmiI GGNNCC 6 cut(s) 111, 147, 2919, 2920, 3000, 3075
BmrFI CCNGG 3 cut(s) 316, 1494, 2351
BmrI ACTGGG 1 cut(s) 448
BmsI GCATC 5 cut(s) 42, 726, 963, 1105, 2967
BmuI ACTGGG 1 cut(s) 448
BpiI GAAGAC 1 cut(s) 2225
BpmI CTGGAG 1 cut(s) 620
Bpu10I CCTNAGC 3 cut(s) 87, 525, 2520
BpuEI CTTGAG 4 cut(s) 581, 1091, 1978, 2819
BpuMI CCSGG 1 cut(s) 316
BsaAI YACGTR 2 cut(s) 2338, 3270
BsaBI GATNNNNATC 1 cut(s) 1719
BsaJI CCNNGG 3 cut(s) 264, 2058, 3205
Bsc4I CCNNNNNNNGG 6 cut(s) 488, 804, 1255, 2371, 3082, 3211
Bse21I CCTNAGG 2 cut(s) 1929, 2382
Bse3DI GCAATG 1 cut(s) 320
Bse8I GATNNNNATC 1 cut(s) 1719
BseBI CCWGG 2 cut(s) 1494, 2351
BseDI CCNNGG 3 cut(s) 264, 2058, 3205
BseJI GATNNNNATC 1 cut(s) 1719
BseLI CCNNNNNNNGG 6 cut(s) 488, 804, 1255, 2371, 3082, 3211
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 9 cut(s) 101, 422, 516, 684, 1401, 1943, 2088, 2525, 3120
BseRI GAGGAG 5 cut(s) 1841, 2271, 2402, 2903, 3098
BseXI GCAGC 1 cut(s) 46
BsgI GTGCAG 5 cut(s) 860, 1877, 2478, 2904, 2949
Bsh1285I CGRYCG 1 cut(s) 2234
BshFI GGCC 5 cut(s) 671, 1356, 1883, 2023, 2643
BsiEI CGRYCG 1 cut(s) 2234
BsiHKAI GWGCWC 2 cut(s) 2726, 3219
BsiHKCI CYCGRG 1 cut(s) 1710
BsiSI CCGG 2 cut(s) 315, 2024
BsiWI CGTACG 1 cut(s) 3270
BslFI GGGAC 5 cut(s) 331, 1211, 1574, 2904, 3059
BslI CCNNNNNNNGG 6 cut(s) 488, 804, 1255, 2371, 3082, 3211
BsmAI GTCTC 2 cut(s) 1882, 2775
BsmFI GGGAC 5 cut(s) 331, 1211, 1574, 2904, 3059
BsmI GAATGC 1 cut(s) 956
BsnI GGCC 5 cut(s) 671, 1356, 1883, 2023, 2643
BsoBI CYCGRG 1 cut(s) 1710
Bsp1286I GDGCHC 3 cut(s) 597, 2726, 3219
BspACI CCGC 4 cut(s) 234, 247, 1195, 2045
BspANI GGCC 5 cut(s) 671, 1356, 1883, 2023, 2643
BspCNI CTCAG 9 cut(s) 100, 421, 517, 685, 1400, 1942, 2089, 2524, 3121
BspLI GGNNCC 6 cut(s) 111, 147, 2919, 2920, 3000, 3075
BspMI ACCTGC 1 cut(s) 3061
BspPI GGATC 7 cut(s) 36, 140, 153, 473, 1728, 2034, 2465
BspQI GCTCTTC 1 cut(s) 1446
BsrDI GCAATG 1 cut(s) 320
BssECI CCNNGG 3 cut(s) 264, 2058, 3205
BssT1I CCWWGG 3 cut(s) 264, 2058, 3205
Bst2UI CCWGG 2 cut(s) 1494, 2351
BstBAI YACGTR 2 cut(s) 2338, 3270
BstC8I GCNNGC 3 cut(s) 114, 2452, 2883
BstH2I RGCGCY 1 cut(s) 731
BstHHI GCGC 1 cut(s) 730
BstMAI GTCTC 2 cut(s) 1882, 2775
BstMCI CGRYCG 1 cut(s) 2234
BstMWI GCNNNNNNNGC 5 cut(s) 530, 1864, 2092, 2521, 2635
BstNI CCWGG 2 cut(s) 1494, 2351
BstNSI RCATGY 3 cut(s) 223, 706, 1546
BstSCI CCNGG 3 cut(s) 314, 1492, 2349
BstSFI CTRYAG 2 cut(s) 363, 1001
BstSNI TACGTA 1 cut(s) 2338
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 2225
BstX2I RGATCY 5 cut(s) 145, 1720, 2026, 2470, 2826
BstXI CCANNNNNNTGG 1 cut(s) 333
BstYI RGATCY 5 cut(s) 145, 1720, 2026, 2470, 2826
Bsu36I CCTNAGG 2 cut(s) 1929, 2382
BsuI GTATCC 3 cut(s) 243, 802, 3048
BsuRI GGCC 5 cut(s) 671, 1356, 1883, 2023, 2643
BtsI GCAGTG 3 cut(s) 775, 2490, 2961
BtsIMutI CAGTG 9 cut(s) 144, 775, 1400, 1570, 1860, 2490, 2724, 2845, 2961
BveI ACCTGC 1 cut(s) 3061
Cac8I GCNNGC 3 cut(s) 114, 2452, 2883
CfoI GCGC 1 cut(s) 730
Cfr13I GGNCC 6 cut(s) 83, 1765, 1881, 2021, 2918, 3073
DraIII CACNNNGTG 1 cut(s) 2840
DriI GACNNNNNGTC 1 cut(s) 286
EaeI YGGCCR 1 cut(s) 1354
Eam1105I GACNNNNNGTC 1 cut(s) 286
EciI GGCGGA 2 cut(s) 262, 2034
Eco105I TACGTA 1 cut(s) 2338
Eco130I CCWWGG 3 cut(s) 264, 2058, 3205
Eco147I AGGCCT 1 cut(s) 2643
Eco24I GRGCYC 1 cut(s) 597
Eco32I GATATC 2 cut(s) 494, 2068
Eco47I GGWCC 4 cut(s) 83, 1765, 2918, 3073
Eco57I CTGAAG 5 cut(s) 337, 646, 693, 1148, 3060
Eco81I CCTNAGG 2 cut(s) 1929, 2382
Eco88I CYCGRG 1 cut(s) 1710
EcoO109I RGGNCCY 3 cut(s) 83, 2918, 3073
EcoRI GAATTC 1 cut(s) 625
EcoRII CCWGG 2 cut(s) 1492, 2349
EcoRV GATATC 2 cut(s) 494, 2068
EcoT14I CCWWGG 3 cut(s) 264, 2058, 3205
EcoT22I ATGCAT 2 cut(s) 956, 1540
EcoT38I GRGCYC 1 cut(s) 597
ErhI CCWWGG 3 cut(s) 264, 2058, 3205
FalI AAGNNNNNCTT 6 cut(s) 39, 71, 706, 738, 2055, 2087
FaqI GGGAC 5 cut(s) 331, 1211, 1574, 2904, 3059
FauI CCCGC 1 cut(s) 1188
FauNDI CATATG 4 cut(s) 328, 562, 681, 814
FblI GTMKAC 1 cut(s) 2276
Fnu4HI GCNGC 2 cut(s) 35, 235
FriOI GRGCYC 1 cut(s) 597
Fsp4HI GCNGC 2 cut(s) 35, 235
FspBI CTAG 4 cut(s) 117, 189, 548, 1760
GlaI GCGC 1 cut(s) 729
GluI GCNGC 2 cut(s) 35, 235
GsuI CTGGAG 1 cut(s) 620
HaeII RGCGCY 1 cut(s) 731
HaeIII GGCC 5 cut(s) 671, 1356, 1883, 2023, 2643
HapII CCGG 2 cut(s) 315, 2024
HhaI GCGC 1 cut(s) 730
Hin6I GCGC 1 cut(s) 728
HinP1I GCGC 1 cut(s) 728
HincII GTYRAC 1 cut(s) 134
HindII GTYRAC 1 cut(s) 134
HindIII AAGCTT 3 cut(s) 749, 869, 2084
HpaII CCGG 2 cut(s) 315, 2024
HphI GGTGA 7 cut(s) 479, 511, 1088, 1269, 1478, 2704, 3038
Hpy166II GTNNAC 7 cut(s) 134, 280, 502, 1765, 2277, 2341, 2944
Hpy8I GTNNAC 7 cut(s) 134, 280, 502, 1765, 2277, 2341, 2944
HpyCH4IV ACGT 6 cut(s) 1066, 1417, 1590, 2032, 2337, 3269
HpyF10VI GCNNNNNNNGC 5 cut(s) 530, 1864, 2092, 2521, 2635
HpySE526I ACGT 6 cut(s) 1066, 1417, 1590, 2032, 2337, 3269
HspAI GCGC 1 cut(s) 728
KflI GGGWCCC 1 cut(s) 2918
LguI GCTCTTC 1 cut(s) 1446
LmnI GCTCC 5 cut(s) 109, 608, 3196, 3214, 3235
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 5 cut(s) 42, 726, 963, 1105, 2967
MaeI CTAG 4 cut(s) 117, 189, 548, 1760
MaeII ACGT 6 cut(s) 1066, 1417, 1590, 2032, 2337, 3269
MaeIII GTNAC 6 cut(s) 434, 1076, 1420, 1586, 3114, 3263
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 5 cut(s) 145, 1720, 2026, 2470, 2826
MhlI GDGCHC 3 cut(s) 597, 2726, 3219
MlsI TGGCCA 1 cut(s) 1356
MluNI TGGCCA 1 cut(s) 1356
MlyI GAGTC 4 cut(s) 7, 560, 2245, 2481
MmeI TCCRAC 5 cut(s) 6, 176, 1930, 2815, 3192
Mox20I TGGCCA 1 cut(s) 1356
Mph1103I ATGCAT 2 cut(s) 956, 1540
MscI TGGCCA 1 cut(s) 1356
MslI CAYNNNNRTG 8 cut(s) 331, 959, 1338, 1362, 1547, 1853, 2778, 3024
Msp20I TGGCCA 1 cut(s) 1356
MspI CCGG 2 cut(s) 315, 2024
MspR9I CCNGG 3 cut(s) 316, 1494, 2351
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 956
MvaI CCWGG 2 cut(s) 1494, 2351
MwoI GCNNNNNNNGC 5 cut(s) 530, 1864, 2092, 2521, 2635
NciI CCSGG 1 cut(s) 316
NdeI CATATG 4 cut(s) 328, 562, 681, 814
NlaIV GGNNCC 6 cut(s) 111, 147, 2919, 2920, 3000, 3075
NmuCI GTSAC 5 cut(s) 434, 1076, 1420, 3114, 3263
NsiI ATGCAT 2 cut(s) 956, 1540
NspI RCATGY 3 cut(s) 223, 706, 1546
PaeR7I CTCGAG 1 cut(s) 1710
PceI AGGCCT 1 cut(s) 2643
PciI ACATGT 1 cut(s) 219
PciSI GCTCTTC 1 cut(s) 1446
PcsI WCGNNNNNNNCGW 2 cut(s) 1786, 1912
PctI GAATGC 1 cut(s) 956
Pfl23II CGTACG 1 cut(s) 3270
PfoI TCCNGGA 1 cut(s) 314
PkrI GCNGC 2 cut(s) 36, 236
Ple19I CGATCG 1 cut(s) 2234
PleI GAGTC 4 cut(s) 7, 560, 2244, 2481
PpsI GAGTC 4 cut(s) 7, 560, 2244, 2481
Ppu21I YACGTR 2 cut(s) 2338, 3270
PpuMI RGGWCCY 3 cut(s) 83, 2918, 3073
PscI ACATGT 1 cut(s) 219
PshBI ATTAAT 1 cut(s) 2742
Psp5II RGGWCCY 3 cut(s) 83, 2918, 3073
Psp6I CCWGG 2 cut(s) 1492, 2349
PspGI CCWGG 2 cut(s) 1492, 2349
PspLI CGTACG 1 cut(s) 3270
PspN4I GGNNCC 6 cut(s) 111, 147, 2919, 2920, 3000, 3075
PspPI GGNCC 6 cut(s) 83, 1765, 1881, 2021, 2918, 3073
PspPPI RGGWCCY 3 cut(s) 83, 2918, 3073
PsuI RGATCY 5 cut(s) 145, 1720, 2026, 2470, 2826
PvuI CGATCG 1 cut(s) 2234
RseI CAYNNNNRTG 8 cut(s) 331, 959, 1338, 1362, 1547, 1853, 2778, 3024
SapI GCTCTTC 1 cut(s) 1446
SatI GCNGC 2 cut(s) 35, 235
Sau96I GGNCC 6 cut(s) 83, 1765, 1881, 2021, 2918, 3073
ScaI AGTACT 3 cut(s) 389, 2870, 3134
SchI GAGTC 4 cut(s) 7, 560, 2245, 2481
ScrFI CCNGG 3 cut(s) 316, 1494, 2351
SduI GDGCHC 3 cut(s) 597, 2726, 3219
SfaNI GCATC 5 cut(s) 42, 726, 963, 1105, 2967
SfcI CTRYAG 2 cut(s) 363, 1001
Sfr274I CTCGAG 1 cut(s) 1710
SinI GGWCC 4 cut(s) 83, 1765, 2918, 3073
SlaI CTCGAG 1 cut(s) 1710
SmiMI CAYNNNNRTG 8 cut(s) 331, 959, 1338, 1362, 1547, 1853, 2778, 3024
SmlI CTYRAG 5 cut(s) 596, 1070, 1710, 1957, 2798
SmoI CTYRAG 5 cut(s) 596, 1070, 1710, 1957, 2798
SnaBI TACGTA 1 cut(s) 2338
SseBI AGGCCT 1 cut(s) 2643
SsiI CCGC 4 cut(s) 234, 247, 1195, 2045
SspI AATATT 2 cut(s) 258, 2704
SspMI CTAG 4 cut(s) 117, 189, 548, 1760
StuI AGGCCT 1 cut(s) 2643
StyD4I CCNGG 3 cut(s) 314, 1492, 2349
StyI CCWWGG 3 cut(s) 264, 2058, 3205
TaiI ACGT 6 cut(s) 1069, 1420, 1593, 2035, 2340, 3272
TaqI TCGA 5 cut(s) 78, 569, 1711, 2230, 2234
TatI WGTACW 6 cut(s) 119, 387, 2746, 2868, 2983, 3132
TauI GCSGC 1 cut(s) 237
TscAI CASTG 9 cut(s) 144, 775, 1400, 1570, 1860, 2497, 2731, 2845, 2968
TseFI GTSAC 5 cut(s) 434, 1076, 1420, 3114, 3263
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 5 cut(s) 434, 1076, 1420, 3114, 3263
TspGWI ACGGA 5 cut(s) 527, 1778, 2128, 2354, 3067
TspRI CASTG 9 cut(s) 144, 775, 1400, 1570, 1860, 2497, 2731, 2845, 2968
VpaK11BI GGWCC 4 cut(s) 83, 1765, 2918, 3073
VspI ATTAAT 1 cut(s) 2742
XapI RAATTY 7 cut(s) 161, 625, 1229, 1403, 1517, 2537, 2989
XbaI TCTAGA 1 cut(s) 547
XceI RCATGY 3 cut(s) 223, 706, 1546
XhoI CTCGAG 1 cut(s) 1710
XmiI GTMKAC 1 cut(s) 2276
XspI CTAG 4 cut(s) 117, 189, 548, 1760
ZrmI AGTACT 3 cut(s) 389, 2870, 3134
Zsp2I ATGCAT 2 cut(s) 956, 1540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.