Rroxscaffold_1G00031950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000333
Physical Location & Seq
Reverse (-)
45369818 .. 45373149
3332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00031950.1

Sequence Viewer

Length: 426 bp
ATGAAGAGTACCATTACTTATGTGGCAAAAAAGATTGATGAACTTGGAGGTCTTGTTAGAGGGATGAAAGAAGAATTGTTCAACGCCGTGAGAGGAGGTTGTAATCGGGATATTAGTATAAAAAGCGACGATGCTAATCATGAAAACAAGGATGCGGAAATGTCGCAAATGACATTTGCGGTTCTTGATGTATTGGATCTATCATTGGCCGAAGACTGTCTTCCTCAATATTTGCCAAGATTCTTCCGATATTTTGTTCGGTTAAAACTTCCTAGAAGACATCAAAGTGAAAAAAGAACTGTGGAAGGAGCTAGGAGGCCGAGAAGCTACACGGCTCGAGCTGCTCTTTATTCACCGGCCGATATCTCTCTCATACGACCTCTAATCGAGTTGATTCCAAAAGGGATTTTTCTGGGCTTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.03

Weight (kDa)

9.36

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 155, 179
AclWI GGATC 1 cut(s) 204
AcoI YGGCCR 2 cut(s) 207, 357
AfaI GTAC 1 cut(s) 10
AgsI TTSAA 1 cut(s) 82
AluBI AGCT 4 cut(s) 311, 327, 341, 423
AluI AGCT 4 cut(s) 311, 327, 341, 423
AlwI GGATC 1 cut(s) 204
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 3 cut(s) 207, 317, 357
ApeKI GCWGC 1 cut(s) 341
AsuHPI GGTGA 1 cut(s) 345
AvaI CYCGRG 1 cut(s) 336
BbsI GAAGAC 3 cut(s) 212, 219, 283
BbvI GCAGC 1 cut(s) 328
BceAI ACGGC 2 cut(s) 71, 348
BfaI CTAG 3 cut(s) 273, 312, 424
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 336
BmsI GCATC 2 cut(s) 121, 142
BpiI GAAGAC 3 cut(s) 212, 219, 283
BsaBI GATNNNNATC 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bse118I RCCGGY 1 cut(s) 355
Bse8I GATNNNNATC 1 cut(s) 135
BseGI GGATG 2 cut(s) 69, 157
BseJI GATNNNNATC 1 cut(s) 135
BseRI GAGGAG 1 cut(s) 108
BseX3I CGGCCG 1 cut(s) 357
BseXI GCAGC 1 cut(s) 328
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 3 cut(s) 209, 319, 359
BsiEI CGRYCG 1 cut(s) 360
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 1 cut(s) 356
BsnI GGCC 3 cut(s) 209, 319, 359
BsoBI CYCGRG 1 cut(s) 336
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 2 cut(s) 155, 179
BspANI GGCC 3 cut(s) 209, 319, 359
BspHI TCATGA 1 cut(s) 139
BspPI GGATC 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 355
BssMI GATC 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 218, 301
BstF5I GGATG 2 cut(s) 69, 157
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMCI CGRYCG 1 cut(s) 360
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 328
BstV2I GAAGAC 3 cut(s) 212, 219, 283
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BstZI CGGCCG 1 cut(s) 357
BsuRI GGCC 3 cut(s) 209, 319, 359
BtsCI GGATG 2 cut(s) 69, 157
CciI TCATGA 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 355
Csp6I GTAC 1 cut(s) 9
CviAII CATG 1 cut(s) 140
CviJI RGCY 9 cut(s) 209, 311, 319, 327, 335, 341, 359, 417, 423
CviKI_1 RGCY 9 cut(s) 209, 311, 319, 327, 335, 341, 359, 417, 423
CviQI GTAC 1 cut(s) 9
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
EaeI YGGCCR 2 cut(s) 207, 357
EagI CGGCCG 1 cut(s) 357
EclXI CGGCCG 1 cut(s) 357
Eco32I GATATC 1 cut(s) 364
Eco52I CGGCCG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 336
EcoRV GATATC 1 cut(s) 364
FaeI CATG 1 cut(s) 143
FaiI YATR 4 cut(s) 21, 119, 141, 374
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 2 cut(s) 76, 164
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 3 cut(s) 273, 312, 424
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 3 cut(s) 209, 319, 359
HapII CCGG 1 cut(s) 356
Hin1II CATG 1 cut(s) 143
HinfI GANTC 2 cut(s) 240, 394
HpaII CCGG 1 cut(s) 356
HphI GGTGA 1 cut(s) 345
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 3 cut(s) 107, 140, 185
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 2 cut(s) 218, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 2 cut(s) 369, 398
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 2 cut(s) 121, 142
MaeI CTAG 3 cut(s) 273, 312, 424
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 6 cut(s) 16, 83, 212, 224, 235, 288
MflI RGATCY 1 cut(s) 196
MluCI AATT 1 cut(s) 74
MnlI CCTC 7 cut(s) 41, 53, 86, 89, 234, 309, 390
MseI TTAA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 1 cut(s) 356
MwoI GCNNNNNNNGC 1 cut(s) 341
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 143
NmeAIII GCCGAG 1 cut(s) 345
PaeR7I CTCGAG 1 cut(s) 336
PagI TCATGA 1 cut(s) 139
PfeI GAWTC 2 cut(s) 240, 394
PkrI GCNGC 1 cut(s) 343
PspXI VCTCGAGB 1 cut(s) 336
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 1 cut(s) 196
SetI ASST 7 cut(s) 52, 100, 313, 329, 343, 382, 425
SfaNI GCATC 2 cut(s) 121, 142
Sfr274I CTCGAG 1 cut(s) 336
SlaI CTCGAG 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 336, 418
SmoI CTYRAG 2 cut(s) 336, 418
Sse9I AATT 1 cut(s) 74
SsiI CCGC 2 cut(s) 155, 179
SspI AATATT 1 cut(s) 230
SspMI CTAG 3 cut(s) 273, 312, 424
TaaI ACNGT 2 cut(s) 218, 301
TaqI TCGA 2 cut(s) 337, 387
TasI AATT 1 cut(s) 74
TfiI GAWTC 2 cut(s) 240, 394
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 4 cut(s) 17, 54, 80, 156
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XhoI CTCGAG 1 cut(s) 336
XspI CTAG 3 cut(s) 273, 312, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.